histone h3, snap_masked-scaffold1959_size23944-processed-gene-0.1 (gene) Tigriopus kingsejongensis

Overview


Name	histone h3
Unique Name	snap_masked-scaffold1959_size23944-processed-gene-0.1
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of histone h3 vs. L. salmonis genes
Match: EMLSAG00000005052 (supercontig:LSalAtl2s:LSalAtl2s263:50184:50594:1 gene:EMLSAG00000005052 transcript:EMLSAT00000005052 description:"augustus_masked-LSalAtl2s263-processed-gene-0.2")

HSP 1 Score: 149.443 bits (376), Expect = 2.431e-46
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS+A+MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

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BLAST of histone h3 vs. L. salmonis genes
Match: EMLSAG00000005193 (supercontig:LSalAtl2s:LSalAtl2s2742:9871:10281:-1 gene:EMLSAG00000005193 transcript:EMLSAT00000005193 description:"augustus-LSalAtl2s2742-processed-gene-0.1")

HSP 1 Score: 149.443 bits (376), Expect = 2.431e-46
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS+A+MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

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BLAST of histone h3 vs. L. salmonis genes
Match: EMLSAG00000007016 (supercontig:LSalAtl2s:LSalAtl2s399:369072:370235:1 gene:EMLSAG00000007016 transcript:EMLSAT00000007016 description:"augustus_masked-LSalAtl2s399-processed-gene-3.0")

HSP 1 Score: 146.747 bits (369), Expect = 2.626e-45
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQSAA+ ALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

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BLAST of histone h3 vs. L. salmonis genes
Match: EMLSAG00000000659 (supercontig:LSalAtl2s:LSalAtl2s1105:15895:22907:-1 gene:EMLSAG00000000659 transcript:EMLSAT00000000659 description:"maker-LSalAtl2s1105-augustus-gene-0.32")

HSP 1 Score: 137.117 bits (344), Expect = 2.372e-37
Identity = 84/165 (50.91%), Postives = 106/165 (64.24%), Query Frame = 0

Query:   49 RDLDDLDDGASSSSSGFLTHTSSLIEAQRRSQKKPVAPKSLPPAQKSPRGSRARPLPPPPQVGGGYPATPKRRRYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNL 213
            + + + +D AS++SS FL   SS    QR      ++   + P   + + S + P       G   P TPK+RR+RPGT ALREIR +QK  +LLIP LPFSRLVKEI+  + AS S   +RFQS+AL ALQEAAE Y+V L ED VL AIHAKRVTIMPKD+ L
Sbjct:   34 KXVQNQNDTASNNSSEFLVARSS----QRSDNSSELS--FMYPTDLNKKKSISTPQGKNISKGIATP-TPKKRRFRPGTKALREIRHFQKKTDLLIPHLPFSRLVKEIS--IKAS-SKTDIRFQSSALQALQEAAETYLVHLFEDVVLLAIHAKRVTIMPKDIIL 188

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BLAST of histone h3 vs. L. salmonis genes
Match: EMLSAG00000009977 (supercontig:LSalAtl2s:LSalAtl2s652:276147:278120:1 gene:EMLSAG00000009977 transcript:EMLSAT00000009977 description:"maker-LSalAtl2s652-snap-gene-2.38")

HSP 1 Score: 122.865 bits (307), Expect = 1.423e-36
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 0

Query:  133 IRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            IR+YQKS  LLI +LPF RLV+EIAQ          LRFQSAA+ ALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:    8 IRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 90

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BLAST of histone h3 vs. L. salmonis genes
Match: EMLSAG00000000378 (supercontig:LSalAtl2s:LSalAtl2s1058:129792:130401:-1 gene:EMLSAG00000000378 transcript:EMLSAT00000000378 description:"snap_masked-LSalAtl2s1058-processed-gene-0.5")

HSP 1 Score: 100.908 bits (250), Expect = 5.515e-28
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0

Query:  151 RLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RLV+EIAQ          LRFQS+A+MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   25 RLVREIAQDFKTD-----LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 89

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BLAST of histone h3 vs. L. salmonis genes
Match: EMLSAG00000001872 (supercontig:LSalAtl2s:LSalAtl2s1322:13257:13733:-1 gene:EMLSAG00000001872 transcript:EMLSAT00000001872 description:"augustus_masked-LSalAtl2s1322-processed-gene-0.3")

HSP 1 Score: 92.4337 bits (228), Expect = 6.596e-24
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0

Query:  130 LREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRI 217
            LR+I +Y++S  LLI ++PF RLVKEI   +A +      + Q  A+ ALQE  E Y+  L E + LC IHA+RVT+MPKD+ LARRI
Sbjct:   72 LRDIHRYRRSTELLIRKMPFYRLVKEIINQIACT----DFKVQVLAISALQEGCENYITDLFEKSNLCCIHARRVTLMPKDIRLARRI 155

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BLAST of histone h3 vs. L. salmonis genes
Match: EMLSAG00000011182 (supercontig:LSalAtl2s:LSalAtl2s760:411575:414587:1 gene:EMLSAG00000011182 transcript:EMLSAT00000011182 description:"snap_masked-LSalAtl2s760-processed-gene-3.20")

HSP 1 Score: 82.8037 bits (203), Expect = 1.017e-20
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0

Query:  177 MALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:    1 MALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 44

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BLAST of histone h3 vs. L. salmonis genes
Match: EMLSAG00000011192 (supercontig:LSalAtl2s:LSalAtl2s760:431843:433024:1 gene:EMLSAG00000011192 transcript:EMLSAT00000011192 description:"snap-LSalAtl2s760-processed-gene-3.76")

HSP 1 Score: 80.8777 bits (198), Expect = 1.901e-20
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0

Query:  177 MALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:    1 MALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 44

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BLAST of histone h3 vs. L. salmonis genes
Match: EMLSAG00000005990 (supercontig:LSalAtl2s:LSalAtl2s323:266828:267898:1 gene:EMLSAG00000005990 transcript:EMLSAT00000005990 description:"snap-LSalAtl2s323-processed-gene-2.28")

HSP 1 Score: 59.6918 bits (143), Expect = 3.208e-12
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0

Query:  169 LRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRI 217
            L F    +MALQE++ AY+V   +D  LCAI+ KRVTIM KD+ L+RRI
Sbjct:   37 LEFPVLLVMALQESSAAYLVRFFQDNNLCAINYKRVTIMSKDIQLSRRI 85

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BLAST of histone h3 vs. SwissProt
Match: gi|119370646|sp|Q402E2.3|H33A_LILLO (RecName: Full=Histone H3.3a; AltName: Full=Histone soH3-2; AltName: Full=Somatic-like histone H3-2)

HSP 1 Score: 149.828 bits (377), Expect = 4.504e-45
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS +LLI +LPF RLV+EIAQ   A      LRFQS A++ALQEAAEAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDYKAD-----LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

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BLAST of histone h3 vs. SwissProt
Match: gi|59799542|sp|P69071.2|H3_DERIM (RecName: Full=Histone H3, embryonic >gi|59799543|sp|P69072.2|H3_LYTPI RecName: Full=Histone H3, embryonic >gi|59799544|sp|P69073.2|H3_PARLI RecName: Full=Histone H3, embryonic >gi|59799545|sp|P69074.2|H3_PISBR RecName: Full=Histone H3, embryonic >gi|59799546|sp|P69075.2|H3_PISOC RecName: Full=Histone H3, embryonic >gi|59799547|sp|P69076.2|H3_PSAMI RecName: Full=Histone H3, embryonic >gi|59799548|sp|P69077.2|H3_PYCHE RecName: Full=Histone H3, embryonic >gi|59799549|sp|P69078.2|H3_SOLST RecName: Full=Histone H3, embryonic >gi|59799550|sp|P69079.2|H3_STRDR RecName: Full=Histone H3, embryonic)

HSP 1 Score: 149.443 bits (376), Expect = 5.975e-45
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS+A+MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTE-----LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

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BLAST of histone h3 vs. SwissProt
Match: gi|46397771|sp|P02299.4|H3_DROME (RecName: Full=Histone H3 >gi|55977046|sp|P84230.2|H32_CAIMO RecName: Full=Histone H3.2 >gi|55977049|sp|P84234.2|H32_ONCMY RecName: Full=Histone H3.2 >gi|55977050|sp|P84235.2|H3_PLADU RecName: Full=Histone H3 >gi|55977051|sp|P84236.2|H3_DROHY RecName: Full=Histone H3 >gi|55977052|sp|P84237.2|H3_TIGCA RecName: Full=Histone H3 >gi|55977053|sp|P84238.2|H3_CHITH RecName: Full=Histone H3; Short=H3 >gi|55977054|sp|P84239.2|H3_URECA RecName: Full=Histone H3 >gi|55977059|sp|P84228.2|H32_MOUSE RecName: Full=Histone H3.2 >gi|55977060|sp|P84229.2|H32_CHICK RecName: Full=Histone H3.2; AltName: Full=Histone H3 class I >gi|55977061|sp|P84233.2|H32_XENLA RecName: Full=Histone H3.2 >gi|74758899|sp|Q71DI3.3|H32_HUMAN RecName: Full=Histone H3.2; AltName: Full=Histone H3/m; AltName: Full=Histone H3/o >gi|81911078|sp|Q6LBE8.3|H32_MUSPA RecName: Full=Histone H3.2 >gi|82249441|sp|Q4QRF4.3|H32_DANRE RecName: Full=Histone H3.2 >gi|116248095|sp|Q28D37.3|H32_XENTR RecName: Full=Histone H3.2 >gi|116256314|sp|P84227.2|H32_BOVIN RecName: Full=Histone H3.2 >gi|116256315|sp|P84231.2|H32_ICTBU RecName: Full=Histone H3.2 >gi|116256316|sp|P84232.2|H32_PORAF RecName: Full=Histone H3.2)

HSP 1 Score: 149.443 bits (376), Expect = 7.345e-45
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS+A+MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

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BLAST of histone h3 vs. SwissProt
Match: gi|55977055|sp|P68431.2|H31_HUMAN (RecName: Full=Histone H3.1; AltName: Full=Histone H3/a; AltName: Full=Histone H3/b; AltName: Full=Histone H3/c; AltName: Full=Histone H3/d; AltName: Full=Histone H3/f; AltName: Full=Histone H3/h; AltName: Full=Histone H3/i; AltName: Full=Histone H3/j; AltName: Full=Histone H3/k; AltName: Full=Histone H3/l >gi|55977056|sp|P68432.2|H31_BOVIN RecName: Full=Histone H3.1 >gi|55977057|sp|P68433.2|H31_MOUSE RecName: Full=Histone H3.1 >gi|81863898|sp|Q6LED0.3|H31_RAT RecName: Full=Histone H3.1 >gi|81911079|sp|Q6LBF0.3|H31_MUSPA RecName: Full=Histone H3.1)

HSP 1 Score: 149.058 bits (375), Expect = 9.431e-45
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS+A+MALQEA EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

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BLAST of histone h3 vs. SwissProt
Match: gi|122090|sp|P08437.2|H3_VOLCA (RecName: Full=Histone H3 >gi|75275872|sp|Q6LCW8.1|H32_CHLRE RecName: Full=Histone H3 type 2)

HSP 1 Score: 148.673 bits (374), Expect = 1.309e-44
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS A++ALQEAAEAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   40 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 133

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BLAST of histone h3 vs. SwissProt
Match: gi|75025386|sp|Q9U281.3|H332_CAEEL (RecName: Full=Histone H3.3 type 2)

HSP 1 Score: 148.673 bits (374), Expect = 1.321e-44
Identity = 74/99 (74.75%), Postives = 81/99 (81.82%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQSAA+ ALQEA+EAY+VGL EDT LCAIHAKRVTIMPKDM LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGE 134

[Close]

BLAST of histone h3 vs. SwissProt
Match: gi|20138105|sp|P90543.3|H3_EUPCR (RecName: Full=Histone H3)

HSP 1 Score: 148.288 bits (373), Expect = 1.733e-44
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS+A++ALQEAAEAY+V L EDT LCAIHAKRVTIMPKDM LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQEFKGD-----LRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQLARRIRGE 134

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BLAST of histone h3 vs. SwissProt
Match: gi|27734400|sp|P59169.2|H33_ARATH (RecName: Full=Histone H3.3; AltName: Full=Histone H3.2 >gi|54035960|sp|Q71V89.3|H33_GOSHI RecName: Full=Histone H3.3 >gi|59799551|sp|P69245.2|H33_LOLTE RecName: Full=Histone H3.3 >gi|59799580|sp|P69244.2|H33_MEDSA RecName: Full=Histone H3.3; AltName: Full=Histone H3.2; AltName: Full=Minor histone H3 >gi|73919839|sp|Q71H73.3|H33_VITVI RecName: Full=Histone H3.3 >gi|73919913|sp|Q6RUR1.3|H33_CAPAN RecName: Full=Histone H3.3 >gi|73919918|sp|Q71U98.3|H33_ORYCO RecName: Full=Histone H3.3 >gi|73919919|sp|Q711T2.3|H33_PINPS RecName: Full=Histone H3.3 >gi|75138729|sp|Q76N23.1|H33_TOBAC RecName: Full=Histone H3.3 >gi|119370648|sp|Q3C2E5.3|H33_LOLMU RecName: Full=Histone H3.3; AltName: Full=Replacement histone H3 >gi|158512877|sp|A2XHJ3.1|H33_ORYSI RecName: Full=Histone H3.3; AltName: Full=H3.2 >gi|158564092|sp|Q0JCT1.2|H33_ORYSJ RecName: Full=Histone H3.3; AltName: Full=H3.2)

HSP 1 Score: 148.288 bits (373), Expect = 2.062e-44
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS A++ALQEAAEAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

[Close]

BLAST of histone h3 vs. SwissProt
Match: gi|48427895|sp|Q8WSF1.3|H33_TRIPS (RecName: Full=Histone H3.3)

HSP 1 Score: 147.902 bits (372), Expect = 2.324e-44
Identity = 74/99 (74.75%), Postives = 81/99 (81.82%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQSAA+ ALQEAAEAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

[Close]

BLAST of histone h3 vs. SwissProt
Match: gi|81863473|sp|Q64400.3|H32_CRILO (RecName: Full=Histone H3.2)

HSP 1 Score: 147.902 bits (372), Expect = 2.508e-44
Identity = 72/99 (72.73%), Postives = 81/99 (81.82%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTV LREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS+A+MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVTLREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

[Close]

BLAST of histone h3 vs. nr
Match: gi|1314814002|dbj|GBE61264.1| (histone [Babesia ovata])

HSP 1 Score: 151.754 bits (382), Expect = 2.589e-43
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGDH 221
            RYRPGTVALREIR++QKS  LLI +LPF RLV+EIAQ   A      LRFQS A++ALQEAAEAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+H
Sbjct:   41 RYRPGTVALREIRKFQKSTELLIRKLPFQRLVREIAQDFKAD-----LRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGEH 135

[Close]

BLAST of histone h3 vs. nr
Match: gi|1366036964|ref|XP_024169908.1| (histone H3.3a-like [Rosa chinensis] >gi|1358145657|gb|PRQ20137.1| putative transcription factor Hap3/NF-YB family [Rosa chinensis])

HSP 1 Score: 151.754 bits (382), Expect = 2.671e-43
Identity = 82/129 (63.57%), Postives = 92/129 (71.32%), Query Frame = 0

Query:   94 KSPRGSRARPL--PPPPQVGGGYPATPKRRRYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            K+PR S A  +     P   GG     K  RYRPGTVALREIR+YQKS +LLI +LPF RLV+E AQ   +      LRF S A+MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKDM LARRIRGD
Sbjct:   15 KAPRKSLATKIAYKSAPSTAGG---VKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVRETAQNYKSD-----LRFNSHAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGD 135

[Close]

BLAST of histone h3 vs. nr
Match: gi|294878494|ref|XP_002768392.1| (histone H3, putative [Perkinsus marinus ATCC 50983] >gi|239870765|gb|EER01110.1| histone H3, putative, partial [Perkinsus marinus ATCC 50983])

HSP 1 Score: 151.369 bits (381), Expect = 2.682e-43
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS +LLI +LPF RLV+E+AQ          LRFQS+A+MALQEAAEAY+VGL EDT LCAIHAKRVTIMPKDM LARRIRG+
Sbjct:   26 RYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREVAQDFKTD-----LRFQSSAVMALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGE 119

[Close]

BLAST of histone h3 vs. nr
Match: gi|294869100|ref|XP_002765759.1| (histone H3, putative [Perkinsus marinus ATCC 50983] >gi|239865928|gb|EEQ98476.1| histone H3, putative, partial [Perkinsus marinus ATCC 50983])

HSP 1 Score: 150.984 bits (380), Expect = 2.783e-43
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS +LLI +LPF RLV+E+AQ          LRFQS+A+MALQEAAEAY+VGL EDT LCAIHAKRVTIMPKDM LARRIRG+
Sbjct:   17 RYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREVAQDFKTD-----LRFQSSAVMALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGE 110

[Close]

BLAST of histone h3 vs. nr
Match: gi|351708581|gb|EHB11500.1| (Histone H3 [Heterocephalus glaber])

HSP 1 Score: 151.754 bits (382), Expect = 2.822e-43
Identity = 80/116 (68.97%), Postives = 89/116 (76.72%), Query Frame = 0

Query:  108 PQVGGGYPAT---PKRRRYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            P  GG  PAT    K  RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS+A+MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   31 PATGGVPPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 141

[Close]

BLAST of histone h3 vs. nr
Match: gi|780039174|ref|XP_011667828.1| (PREDICTED: histone H3, embryonic-like [Strongylocentrotus purpuratus])

HSP 1 Score: 151.369 bits (381), Expect = 3.361e-43
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ V        LRFQS+A+MALQEA+EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDVKTE-----LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

[Close]

BLAST of histone h3 vs. nr
Match: gi|1048421144|ref|XP_017529326.1| (PREDICTED: histone H3.1-like [Manis javanica])

HSP 1 Score: 151.369 bits (381), Expect = 3.418e-43
Identity = 76/109 (69.72%), Postives = 84/109 (77.06%), Query Frame = 0

Query:  112 GGYPATPKRRRYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            GG     K  RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS+A+MALQEA EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   34 GGVKNVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 137

[Close]

BLAST of histone h3 vs. nr
Match: gi|294897307|ref|XP_002775920.1| (histone H3, putative [Perkinsus marinus ATCC 50983] >gi|294944145|ref|XP_002784109.1| histone H3, putative [Perkinsus marinus ATCC 50983] >gi|294944155|ref|XP_002784114.1| histone H3, putative [Perkinsus marinus ATCC 50983] >gi|239882287|gb|EER07736.1| histone H3, putative [Perkinsus marinus ATCC 50983] >gi|239897143|gb|EER15905.1| histone H3, putative [Perkinsus marinus ATCC 50983] >gi|239897148|gb|EER15910.1| histone H3, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 151.369 bits (381), Expect = 3.549e-43
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS +LLI +LPF RLV+E+AQ          LRFQ++A+MALQEAAEAY+VGL EDT LCAIHAKRVTIMPKDM LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREVAQDFKTD-----LRFQTSAVMALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGE 134

[Close]

BLAST of histone h3 vs. nr
Match: gi|1297724563|ref|XP_023055563.1| (histone H3-like [Piliocolobus tephrosceles] >gi|1297724569|ref|XP_023055564.1| histone H3-like [Piliocolobus tephrosceles] >gi|1297762771|ref|XP_023056945.1| histone H3-like [Piliocolobus tephrosceles])

HSP 1 Score: 151.369 bits (381), Expect = 3.914e-43
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 0

Query:  122 RYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            RYRPGTVALREIR+YQKS +LLI +LPF RLV+EIAQ          LRFQS+A+MALQEAAEAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   41 RYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDYKTD-----LRFQSSAVMALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

[Close]

BLAST of histone h3 vs. nr
Match: gi|594661823|ref|XP_007179125.1| (PREDICTED: histone H3.1-like [Balaenoptera acutorostrata scammoni])

HSP 1 Score: 151.369 bits (381), Expect = 4.334e-43
Identity = 80/131 (61.07%), Postives = 92/131 (70.23%), Query Frame = 0

Query:   90 PPAQKSPRGSRARPLPPPPQVGGGYPATPKRRRYRPGTVALREIRQYQKSANLLIPRLPFSRLVKEIAQGVAASMSVRGLRFQSAALMALQEAAEAYVVGLMEDTVLCAIHAKRVTIMPKDMNLARRIRGD 220
            P  Q + + +R   +   P  GG      K  RYRPGTVALREIR+YQKS  LLI +LPF RLV+EIAQ          LRFQS+A+MALQEA EAY+VGL EDT LCAIHAKRVTIMPKD+ LARRIRG+
Sbjct:   17 PRKQLATKAARKTEIFCAPATGG----VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-----LRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 138

The following BLAST results are available for this feature:

BLAST of histone h3 vs. L. salmonis genes
BLAST of histone h3 vs. SwissProt
BLAST of histone h3 vs. nr

BLAST of histone h3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 11


Match Name	E-value	Identity	Description
EMLSAG00000005052	2.431e-46	73.74	supercontig:LSalAtl2s:LSalAtl2s263:50184:50594:1 g...	[more]
EMLSAG00000005193	2.431e-46	73.74	supercontig:LSalAtl2s:LSalAtl2s2742:9871:10281:-1 ...	[more]
EMLSAG00000007016	2.626e-45	73.74	supercontig:LSalAtl2s:LSalAtl2s399:369072:370235:1...	[more]
EMLSAG00000000659	2.372e-37	50.91	supercontig:LSalAtl2s:LSalAtl2s1105:15895:22907:-1...	[more]
EMLSAG00000009977	1.423e-36	70.45	supercontig:LSalAtl2s:LSalAtl2s652:276147:278120:1...	[more]
EMLSAG00000000378	5.515e-28	71.43	supercontig:LSalAtl2s:LSalAtl2s1058:129792:130401:...	[more]
EMLSAG00000001872	6.596e-24	50.00	supercontig:LSalAtl2s:LSalAtl2s1322:13257:13733:-1...	[more]
EMLSAG00000011182	1.017e-20	84.09	supercontig:LSalAtl2s:LSalAtl2s760:411575:414587:1...	[more]
EMLSAG00000011192	1.901e-20	84.09	supercontig:LSalAtl2s:LSalAtl2s760:431843:433024:1...	[more]
EMLSAG00000005990	3.208e-12	55.10	supercontig:LSalAtl2s:LSalAtl2s323:266828:267898:1...	[more]

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BLAST of histone h3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|119370646\|sp\|Q402E2.3\|H33A_LILLO	4.504e-45	74.75	RecName: Full=Histone H3.3a; AltName: Full=Histone...	[more]
gi\|59799542\|sp\|P69071.2\|H3_DERIM	5.975e-45	73.74	RecName: Full=Histone H3, embryonic >gi\|59799543\|s...	[more]
gi\|46397771\|sp\|P02299.4\|H3_DROME	7.345e-45	73.74	RecName: Full=Histone H3 >gi\|55977046\|sp\|P84230.2\|...	[more]
gi\|55977055\|sp\|P68431.2\|H31_HUMAN	9.431e-45	73.74	RecName: Full=Histone H3.1; AltName: Full=Histone ...	[more]
gi\|122090\|sp\|P08437.2\|H3_VOLCA	1.309e-44	73.74	RecName: Full=Histone H3 >gi\|75275872\|sp\|Q6LCW8.1\|...	[more]
gi\|75025386\|sp\|Q9U281.3\|H332_CAEEL	1.321e-44	74.75	RecName: Full=Histone H3.3 type 2	[more]
gi\|20138105\|sp\|P90543.3\|H3_EUPCR	1.733e-44	73.74	RecName: Full=Histone H3	[more]
gi\|27734400\|sp\|P59169.2\|H33_ARATH	2.062e-44	73.74	RecName: Full=Histone H3.3; AltName: Full=Histone ...	[more]
gi\|48427895\|sp\|Q8WSF1.3\|H33_TRIPS	2.324e-44	74.75	RecName: Full=Histone H3.3	[more]
gi\|81863473\|sp\|Q64400.3\|H32_CRILO	2.508e-44	72.73	RecName: Full=Histone H3.2	[more]

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BLAST of histone h3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1314814002\|dbj\|GBE61264.1\|	2.589e-43	74.00	histone [Babesia ovata]	[more]
gi\|1366036964\|ref\|XP_024169908.1\|	2.671e-43	63.57	histone H3.3a-like [Rosa chinensis] >gi\|1358145657...	[more]
gi\|294878494\|ref\|XP_002768392.1\|	2.682e-43	74.75	histone H3, putative [Perkinsus marinus ATCC 50983...	[more]
gi\|294869100\|ref\|XP_002765759.1\|	2.783e-43	74.75	histone H3, putative [Perkinsus marinus ATCC 50983...	[more]
gi\|351708581\|gb\|EHB11500.1\|	2.822e-43	68.97	Histone H3 [Heterocephalus glaber]	[more]
gi\|780039174\|ref\|XP_011667828.1\|	3.361e-43	74.75	PREDICTED: histone H3, embryonic-like [Strongyloce...	[more]
gi\|1048421144\|ref\|XP_017529326.1\|	3.418e-43	69.72	PREDICTED: histone H3.1-like [Manis javanica]	[more]
gi\|294897307\|ref\|XP_002775920.1\|	3.549e-43	73.74	histone H3, putative [Perkinsus marinus ATCC 50983...	[more]
gi\|1297724563\|ref\|XP_023055563.1\|	3.914e-43	74.75	histone H3-like [Piliocolobus tephrosceles] >gi\|12...	[more]
gi\|594661823\|ref\|XP_007179125.1\|	4.334e-43	61.07	PREDICTED: histone H3.1-like [Balaenoptera acutoro...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1959_size23944	supercontig	scaffold1959_size23944:10350..11728 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold1959_size23944-processed-gene-0.1-mRNA-1	snap_masked-scaffold1959_size23944-processed-gene-0.1-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold1959_size23944:10350..11728+

gene from alignment at scaffold1959_size23944:10350..11728+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold1959_size23944-processed-gene-0.1 ID=snap_masked-scaffold1959_size23944-processed-gene-0.1|Name=histone h3|organism=Tigriopus kingsejongensis|type=gene|length=1379bp|location=Sequence derived from alignment at scaffold1959_size23944:10350..11728+ (Tigriopus kingsejongensis)
ATGGTGCGCACACATCAGAATTCGCCCAAGAAGGGCGGAGCGGGCGCCGC
TCGGCCGGCTTGGGCCGGGGGCCGCAGCAAGGCGGGCGGCGGCGAAGCGG
GCAGCTCGTCCACGGGCCAGGACACGGGCATCGGCCTCATGACGCGGGAC
CTGGACGATCTGGACGACGGGGCCTCGTCCTCCTCCTCGGGCTTCCTCAC
ACACACCTCCAGCCTCATCGAGGCCCAGCGGCGGAGCCAGAAGAAGCCCG
TGGCGCCCGTGGCGCCCGCAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCAGCCGCCACGGGCA
GCCGTCCGGCCTTGACCCGCCCCACCCTGCCCGACCACCCGGCCTTCCAC
GCCAAGAAGAGTCTGCCGCCGGCCCAGAAGTCGCCCCGGGGCAGCCGGGC
CCGCCCCCTCCCGCCCCCGCCCCAGGTGGGCGGCGGCTACCCGGCCACGC
CCAAGCGGCGACGCTACCGCCCGGGCACGGTGGCTCTGCGGGAGATTCGG
CAGTACCAGAAGAGCGCCAACCTGCTCATTCCCCGCCTGCCGTTCTCGCG
CCTGGTCAAGGAGATCGCCCAGGGCGTGGCGGCCTCCATGAGTGTGCGCG
GCCTCCGCTTCCAGTCGGCCGCGCTGATGGCGCTGCAGGAGGCGGCCGAG
GCCTACGTGGTGGGCCTCATGGAGGACACGGTCCTCTGCGCCATCCACGC
CAAGCGGGTGACCATCATGCCCAAGGACATGAACCTGGCCCGCCGCATTC
GGGGCGACCACCGCCACGACTTCCACTGA

Synonyms

The feature 'histone h3' has the following synonyms


Synonym
Tk11219

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