carnitine dehydratase, snap_masked-scaffold1_size3401120-processed-gene-1.35 (gene) Tigriopus kingsejongensis

Overview
Namecarnitine dehydratase
Unique Namesnap_masked-scaffold1_size3401120-processed-gene-1.35
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of carnitine dehydratase vs. L. salmonis genes
Match: EMLSAG00000001226 (supercontig:LSalAtl2s:LSalAtl2s11:421277:423175:1 gene:EMLSAG00000001226 transcript:EMLSAT00000001226 description:"maker-LSalAtl2s11-augustus-gene-4.11")

HSP 1 Score: 189.119 bits (479), Expect = 3.023e-57
Identity = 98/215 (45.58%), Postives = 142/215 (66.05%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDY-DVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQD-GPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYE--AKSSGKGQVVDAAISDCTAHLSTMLH-GLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDNLHL 210
             GA V+R++         + Y DV  RGK+S++++LKS +G     +L++ +DV +E FRPGVME+L+L P+   + NP+L+YAR++G+GQ+  PL   AGHDINYI+LSGALS  G  + KPV P+N++GDFGGG L  AFGI+AA+YE    SSGKGQ++D  I+   ++LST L+      + W + RG N+LD GAH Y  Y   +   ++
Sbjct:   27 FGASVIRVDNHPD----AVVYPDVSCRGKKSISLNLKSSKGRSIVKKLVNNSDVFLESFRPGVMEKLQLCPDVLTKENPSLIYARLSGYGQEHNPLTYRAGHDINYISLSGALSKIGRVNEKPVPPINIVGDFGGGGLTCAFGIIAALYERSVNSSGKGQIIDCGITQGASYLSTWLYQSKNIPHLWGNPRGENVLDTGAHFYEVYETKEPGKYI 237          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|341940628|sp|O09174.4|AMACR_MOUSE (RecName: Full=Alpha-methylacyl-CoA racemase; AltName: Full=2-methylacyl-CoA racemase)

HSP 1 Score: 195.667 bits (496), Expect = 2.814e-58
Identity = 100/207 (48.31%), Postives = 133/207 (64.25%), Query Frame = 0
Query:    1 MGADVVRLER--RQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
             GA+VVR+ R    G+N L        RGKRS+A+DLK  QG      + +RADVL+E FR GVME+L+LGPE   + NP L+YAR++G+GQ G  +  AGHDINY+ALSG LS  G     P  P+NLL DFGGG L    GI+ A++E   SG+GQV+D+++ + TA+LS+ L        W+  RG N+LDGGA  Y +Y+ AD
Sbjct:   27 FGAEVVRVNRLGSTGENFLA-------RGKRSLALDLKRSQGVTVLRRMCARADVLLEPFRCGVMEKLQLGPETLLQDNPKLIYARLSGFGQSGIFSKVAGHDINYLALSGVLSKIGRSGENPYPPLNLLADFGGGGLMCTLGIVLALFERTRSGRGQVIDSSMVEGTAYLSSFLWKTQPMGLWKQPRGQNILDGGAPFYTTYKTAD 226          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|313104070|sp|Q9UHK6.2|AMACR_HUMAN (RecName: Full=Alpha-methylacyl-CoA racemase; AltName: Full=2-methylacyl-CoA racemase)

HSP 1 Score: 190.274 bits (482), Expect = 3.466e-56
Identity = 101/207 (48.79%), Postives = 130/207 (62.80%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDV--LNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
             GA VVR++R       G  YDV  L RGKRS+ +DLK  +G      L  R+DVL+E FR GVME+L+LGPE     NP L+YAR++G+GQ G     AGHDINY+ALSG LS  G     P  P+NLL DF GG L  A GI+ A+++   +GKGQV+DA + + TA+LS+ L      + W+  RG N+LDGGA  Y +YR AD
Sbjct:   27 FGARVVRVDRP------GSRYDVSRLGRGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLAGHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFDRTRTGKGQVIDANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTAD 227          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|13637497|sp|P70473.3|AMACR_RAT (RecName: Full=Alpha-methylacyl-CoA racemase; AltName: Full=2-arylpropionyl-CoA epimerase; AltName: Full=2-methylacyl-CoA racemase)

HSP 1 Score: 186.808 bits (473), Expect = 5.888e-55
Identity = 100/205 (48.78%), Postives = 127/205 (61.95%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
             GA+VV ++R    N        L RGKRS+A+DLK   G      + +RADVL+E FR GVME+L+LGPE   + NP L+YAR++G+GQ G  +  AGHDINY+ALSG LS  G     P  P+NLL DFGGG L    GI+ A++E   SG GQV+DA + + TA+LST L        W   RG NLLDGGA  Y +Y+ AD
Sbjct:   27 FGAEVVLVDRLGSVN----HPSHLARGKRSLALDLKRSPGAAVLRRMCARADVLLEPFRCGVMEKLQLGPETLRQDNPKLIYARLSGFGQSGIFSKVAGHDINYVALSGVLSKIGRSGENPYPPLNLLADFGGGGLMCTLGILLALFERTRSGLGQVIDANMVEGTAYLSTFLWKTQAMGLWAQPRGQNLLDGGAPFYTTYKTAD 227          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|74620364|sp|Q8J0F0.1|CEFD2_ACRCH (RecName: Full=Isopenicillin N epimerase component 2; Short=IPN epimerase component 2; AltName: Full=Isopenicillin N epimerase acyl-CoA racemase component)

HSP 1 Score: 156.377 bits (394), Expect = 2.894e-43
Identity = 91/205 (44.39%), Postives = 118/205 (57.56%), Query Frame = 0
Query:    2 GADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGP-EDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            GA V+R+     D       DVL R K S+ +DLK     +  L +LSRADVLI+ FRPGV+ERL L P E   +AN  LV AR+TG+ +DG     AGHDINY+A+SG L+  G     P  P N+LGDF GG      GI+ A+    ++G GQVV+A + D +A+L+TM         W   RG N+LDGG   Y +YR  D
Sbjct:   34 GASVLRI-----DGPRSPKGDVLARNKSSICIDLKHPPSRKVLLSILSRADVLIDPFRPGVLERLGLSPTEVLLKANARLVVARLTGFRRDGKYQDMAGHDINYLAVSGVLAMLGRAGENPFPPANILGDFAGGGAMCVVGILLALVSRDATGLGQVVEANMVDGSAYLATMPRLATKTPFWGSPRGENVLDGGCPWYATYRTKD 233          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|29840845|sp|Q09618.3|YS74_CAEEL (RecName: Full=CaiB/baiF CoA-transferase family protein ZK892.4)

HSP 1 Score: 130.954 bits (328), Expect = 4.291e-34
Identity = 74/211 (35.07%), Postives = 119/211 (56.40%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAF-GDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVY-EAKSSGKGQVVDAAISDCTAHLSTML-HGLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDNL 208
             GADV  ++++       I+   LNRGK    +DLK+ +  +   +L   +DVL++ +RPG +E++ L P   W  N  L+  +++G+GQ G ++   GHDINY+ALSG L  F G    +P  P N+L DF GG L  AFGI++A+Y  + + GKG ++D ++++  A+LS+ + H     N + D+    L  G    Y +Y+  DD  
Sbjct:   29 FGADVTVIDKKNP----AIE-QRLNRGKTMKQLDLKNPEDIKKVRDLCQTSDVLLDPYRPGTLEKMGLDPSTLWNNNKGLIICKISGYGQTGRMSQETGHDINYVALSGMLPTFSGVNATRPWPPANMLADFAGGGLSAAFGILSAIYARSHNGGKGCLLDCSMTEGVAYLSSFVQHYYDQPNLFTDKYA--LFSGECPIYRTYKTKDDKF 232          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|81542073|sp|Q9I701.1|BAUB_PSEAE (RecName: Full=Beta-alanine degradation protein BauB)

HSP 1 Score: 120.553 bits (301), Expect = 6.073e-33
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 0
Query:  247 RPQAVPTVQLDNDKVLVTEWRFPPGGETGWHRHGMDYVVVPQTTGQLLIELSDGEMRADLTTGVAYARVEGTEHNVVNDNDFEFVFVEVELK 338
            RPQAVPTVQ+DN +V+VTEWRF PG ETG HRHG DYVVVP T G LL+E  +G+  A L  G AY R  G EHNV+N +  E VFVE E+K
Sbjct:    4 RPQAVPTVQVDNAEVIVTEWRFAPGAETGRHRHGHDYVVVPLTDGTLLLETPEGDRHAPLVAGQAYFRKAGVEHNVINASAHEVVFVETEIK 95          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|19861453|sp|P76518.2|ACOCT_ECOLI (RecName: Full=Acetyl-CoA:oxalate CoA-transferase; Short=ACOCT; AltName: Full=Acetyl-coenzyme A transferase; AltName: Full=CoA:oxalate CoA-transferase)

HSP 1 Score: 111.694 bits (278), Expect = 1.097e-26
Identity = 73/187 (39.04%), Postives = 101/187 (54.01%), Query Frame = 0
Query:    1 MGADVVRLE--------RRQGDNLLG--IDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLM 177
            MGA V+++E        R  G  + G  + Y  +N GK SV +DLK++      + +L +ADVL E FRPG ME+L    E   E NP L+YA  +G+G  GPL  +  +D    A+SG +   G  D  PV     L D  GG +YL  GI++A+Y  + S +G  VD A+ D T  LS + HGLM
Sbjct:   34 MGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGG-VYLFSGIVSALYGREKSQRGAHVDIAMFDAT--LSFLEHGLM 217          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|694016538|sp|A9X6P9.1|ACOCT_ACEAC (RecName: Full=Acetyl-CoA:oxalate CoA-transferase; Short=ACOCT; AltName: Full=Acetyl-coenzyme A transferase; AltName: Full=CoA:oxalate CoA-transferase; AltName: Full=CoAT3)

HSP 1 Score: 107.071 bits (266), Expect = 6.430e-25
Identity = 63/158 (39.87%), Postives = 93/158 (58.86%), Query Frame = 0
Query:   21 YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPV-MPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLM 177
            +  +NRGK S+ ++LK E      LE++ +ADVL E FRPGVM+RL    E+  + NP L+YA  +G+GQ GPLA    +D    A+SG + A G  DG P  +    L D  GG +++  GI +A+Y  + +GKG  +D ++ D T  L+ + H LM
Sbjct:   67 FSFVNRGKESIVLNLKDEGDRAIFLEMVRKADVLAENFRPGVMDRLGFNYEELAKINPRLIYASSSGFGQTGPLAHYPAYDTIVQAMSGIMMATGFPDGPPTRVGGTSLSDLCGG-VFMFCGIASALYARERTGKGAHIDVSMFDGT--LAFLQHALM 221          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|39931310|sp|O87838.1|FCTA_STRCO (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase)

HSP 1 Score: 106.301 bits (264), Expect = 1.495e-24
Identity = 63/179 (35.20%), Postives = 107/179 (59.78%), Query Frame = 0
Query:    1 MGADVVRLERRQGD-------NLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHL 169
            +GADVV+LE   GD       +L  +D   + +LN  KRS+ ++ KSE+G E   EL+ R+DV++E F PG ++R+    +   E NP +VYA + G+G+ GP  +   +++   A+ G++S  G +DG P+     +GD G G +++  GI+AA+Y+ + +G+GQ V+ A+     +L
Sbjct:   30 LGADVVKLEAPHGDITRGQLRDLPDVDSLYFTMLNCNKRSITLNTKSERGKEILTELIRRSDVMVENFGPGAVDRMGFTWDRVKEINPRIVYASIKGFGE-GPYTAFKAYEVVAQAMGGSMSTTGFEDGPPLATGAQIGDSGTG-VHVVAGILAALYQREHTGRGQRVNVAMQHAVLNL 206          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|39931489|sp|Q82M40.1|FCTA_STRAW (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase)

HSP 1 Score: 103.99 bits (258), Expect = 8.804e-24
Identity = 62/179 (34.64%), Postives = 106/179 (59.22%), Query Frame = 0
Query:    1 MGADVVRLERRQGD-------NLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHL 169
            +GADVV+LE   GD       +L  +D   + +LN  KRS+ ++ K+E+G E   EL+ R+DV++E F PG ++R+    +   + NP +VYA + G+G DGP      +++   A+ G++S  G +DG P+     +GD G G ++   GI+AA+Y+ +++G+GQ V+ A+     +L
Sbjct:   29 LGADVVKLEAPTGDITRGQLRDLPDVDSLYFTMLNCNKRSITLNTKTERGKEILTELIRRSDVMVENFGPGAVDRMGFTWDRIRDINPRIVYASIKGFG-DGPYTDFKAYEVVAQAMGGSMSTTGFEDGPPLATGAQIGDSGTG-IHAVAGILAALYQRENTGRGQRVNVAMQHAVLNL 205          
BLAST of carnitine dehydratase vs. nr
Match: gi|740113365|ref|WP_037962258.1| (CoA transferase [Streptomyces sp. PRh5] >gi|594127811|gb|EXU63123.1| carnitine dehydratase [Streptomyces sp. PRh5])

HSP 1 Score: 257.299 bits (656), Expect = 8.542e-80
Identity = 125/207 (60.39%), Postives = 156/207 (75.36%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGID--YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            +GADVVR++R  G   L ID  YD+ NR KRSV +DLKS+ G    L+L+ RAD+L+EG+RPGV E+L LGP+DC   NP LVY RMTGWGQ+GPLA +AGHDI YIA++GALS  G  DG PV PVNLLGD+ GG+LYL  G++AA++ A++ G GQVVDAAI D TAHL+ ++HG+M    W+DQRGSNLLDGG   Y +Y  AD
Sbjct:   37 LGADVVRVDRPGGTGGLRIDPDYDLANRNKRSVLIDLKSDGGTAVVLDLVERADILVEGYRPGVAEKLGLGPDDCLARNPKLVYGRMTGWGQEGPLARTAGHDIGYIAVTGALSMIGAADGPPVAPVNLLGDYAGGSLYLVIGLLAALHHARAGGPGQVVDAAIVDGTAHLTAVIHGMMAAGGWRDQRGSNLLDGGCPFYGTYETAD 243          
BLAST of carnitine dehydratase vs. nr
Match: gi|827463579|ref|WP_047223344.1| (MULTISPECIES: CoA transferase [Frankia] >gi|827094156|gb|KLL11170.1| carnitine dehydratase [Frankia coriariae] >gi|1139647419|gb|ONH35827.1| carnitine dehydratase [Frankia sp. BMG5.30])

HSP 1 Score: 258.07 bits (658), Expect = 9.704e-80
Identity = 123/208 (59.13%), Postives = 157/208 (75.48%), Query Frame = 0
Query:    1 MGADVVRLERR-QGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDN 207
            +GADV+R++R  + ++++    DVL RG+RSVA+DL+S  G    L+L  RADVLIEG+RPGV ERL +GP DCW  NP LVY RMTGWGQDGPLA +AGHDI YIA++GAL A G +  +P +PVN LGDFGGG+LYL  G++AAV+EA  SG+GQVVDAAI D  A L+ M++GL+   +W+D+RG NLLD G   Y+ YR ADDN
Sbjct:   46 LGADVIRVDRPGEANDIVPPAVDVLRRGRRSVAIDLRSPDGVRAVLDLAERADVLIEGYRPGVAERLGVGPRDCWARNPRLVYGRMTGWGQDGPLAPTAGHDIGYIAITGALHALGRQGEEPAVPVNFLGDFGGGSLYLVVGVLAAVFEAARSGRGQVVDAAIVDGAASLTAMVYGLLAAGQWRDERGVNLLDTGRPWYDVYRTADDN 253          
BLAST of carnitine dehydratase vs. nr
Match: gi|1197972071|ref|WP_086882983.1| (CoA transferase [Streptomyces rhizosphaericus])

HSP 1 Score: 257.299 bits (656), Expect = 9.725e-80
Identity = 125/207 (60.39%), Postives = 156/207 (75.36%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGID--YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            +GADVVR++R  G   L ID  YD+ NR KRSV +DLKS+ G    L+L+ RAD+L+EG+RPGV E+L LGP+DC   NP LVY RMTGWGQ+GPLA +AGHDI YIA++GALS  G  DG PV PVNLLGD+ GG+LYL  G++AA++ A++ G GQVVDAAI D TAHL+ ++HG+M    W+DQRGSNLLDGG   Y +Y  AD
Sbjct:   37 LGADVVRVDRPGGAGGLRIDPDYDLANRNKRSVLIDLKSDGGTAVVLDLVERADILVEGYRPGVAEKLGLGPDDCLARNPKLVYGRMTGWGQEGPLARTAGHDIGYIAVTGALSMIGAADGPPVAPVNLLGDYAGGSLYLVIGLLAALHHARAGGPGQVVDAAIVDGTAHLTAVIHGMMAAGGWRDQRGSNLLDGGCPFYGTYETAD 243          
BLAST of carnitine dehydratase vs. nr
Match: gi|1321733304|gb|PLX43883.1| (carnitine dehydratase [Deltaproteobacteria bacterium])

HSP 1 Score: 256.914 bits (655), Expect = 1.037e-79
Identity = 127/208 (61.06%), Postives = 151/208 (72.60%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYD---VLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            MGADVVR+E       L         L RG+ S+ ++LK     E  LEL+++AD LIEGFRPGVMERL LGP+ C E NP L Y RMTGWGQ+GPLA+ AGHDINYIALSGALS  G KDGKP +P+NL+GDFGGG + LAFGI+ AV+EA  SGKGQVVDAA+ D  A L+TM+   M    WQ++RG+NLLDGGAH YN+Y CAD
Sbjct:   29 MGADVVRIENPTKRVPLPGPTGPRAFLKRGRESIKLNLKEPNEVERVLELIAKADALIEGFRPGVMERLGLGPDRCLERNPRLAYGRMTGWGQNGPLANHAGHDINYIALSGALSTIGPKDGKPTIPLNLIGDFGGGGMLLAFGILCAVFEASKSGKGQVVDAAMLDGAALLTTMVRSFMEEGLWQEKRGTNLLDGGAHFYNTYECAD 236          
BLAST of carnitine dehydratase vs. nr
Match: gi|1086792321|emb|SDP69826.1| (alpha-methylacyl-CoA racemase [Actinopolyspora xinjiangensis])

HSP 1 Score: 257.299 bits (656), Expect = 1.042e-79
Identity = 129/205 (62.93%), Postives = 156/205 (76.10%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            +GADVVR++R       G   D+LNRGKRSV +DLK E+G E  L L  RADVL+EGFRPGV ERL +GP+ C+E NP LVY RMTGWGQDGPLA SAGHDI+YIALSG L+A GD DG P  PVNLLGDFGGGA+YLA G++AA+  A++ G GQVVDA+I D +AHL+TMLHG++    W  +RG+NLLDGGA  Y+ Y  +D
Sbjct:   38 LGADVVRVDRPGA----GGGEDLLNRGKRSVQLDLKHERGPEALLALAGRADVLLEGFRPGVAERLGIGPDPCFEHNPDLVYGRMTGWGQDGPLARSAGHDIDYIALSGVLNAIGDADGPPRPPVNLLGDFGGGAMYLAVGVLAALLRARAGGGGQVVDASIVDGSAHLATMLHGMLATGGWSTERGTNLLDGGAPFYDVYATSD 238          
The following BLAST results are available for this feature:
BLAST of carnitine dehydratase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000012263.023e-5745.58supercontig:LSalAtl2s:LSalAtl2s11:421277:423175:1 ... [more]
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BLAST of carnitine dehydratase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|341940628|sp|O09174.4|AMACR_MOUSE2.814e-5848.31RecName: Full=Alpha-methylacyl-CoA racemase; AltNa... [more]
gi|313104070|sp|Q9UHK6.2|AMACR_HUMAN3.466e-5648.79RecName: Full=Alpha-methylacyl-CoA racemase; AltNa... [more]
gi|13637497|sp|P70473.3|AMACR_RAT5.888e-5548.78RecName: Full=Alpha-methylacyl-CoA racemase; AltNa... [more]
gi|74620364|sp|Q8J0F0.1|CEFD2_ACRCH2.894e-4344.39RecName: Full=Isopenicillin N epimerase component ... [more]
gi|29840845|sp|Q09618.3|YS74_CAEEL4.291e-3435.07RecName: Full=CaiB/baiF CoA-transferase family pro... [more]
gi|81542073|sp|Q9I701.1|BAUB_PSEAE6.073e-3363.04RecName: Full=Beta-alanine degradation protein Bau... [more]
gi|19861453|sp|P76518.2|ACOCT_ECOLI1.097e-2639.04RecName: Full=Acetyl-CoA:oxalate CoA-transferase; ... [more]
gi|694016538|sp|A9X6P9.1|ACOCT_ACEAC6.430e-2539.87RecName: Full=Acetyl-CoA:oxalate CoA-transferase; ... [more]
gi|39931310|sp|O87838.1|FCTA_STRCO1.495e-2435.20RecName: Full=Formyl-CoA:oxalate CoA-transferase; ... [more]
gi|39931489|sp|Q82M40.1|FCTA_STRAW8.804e-2434.64RecName: Full=Formyl-CoA:oxalate CoA-transferase; ... [more]

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BLAST of carnitine dehydratase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|740113365|ref|WP_037962258.1|8.542e-8060.39CoA transferase [Streptomyces sp. PRh5] >gi|594127... [more]
gi|827463579|ref|WP_047223344.1|9.704e-8059.13MULTISPECIES: CoA transferase [Frankia] >gi|827094... [more]
gi|1197972071|ref|WP_086882983.1|9.725e-8060.39CoA transferase [Streptomyces rhizosphaericus][more]
gi|1321733304|gb|PLX43883.1|1.037e-7961.06carnitine dehydratase [Deltaproteobacteria bacteri... [more]
gi|1086792321|emb|SDP69826.1|1.042e-7962.93alpha-methylacyl-CoA racemase [Actinopolyspora xin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1_size3401120supercontigscaffold1_size3401120:176202..177504 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold1_size3401120-processed-gene-1.35-mRNA-1snap_masked-scaffold1_size3401120-processed-gene-1.35-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1_size3401120:176202..177504-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold1_size3401120-processed-gene-1.35 ID=snap_masked-scaffold1_size3401120-processed-gene-1.35|Name=carnitine dehydratase|organism=Tigriopus kingsejongensis|type=gene|length=1303bp|location=Sequence derived from alignment at scaffold1_size3401120:176202..177504- (Tigriopus kingsejongensis)
ATGGGTGCTGACGTGGTGCGCTTGGAACGCCGTCAAGGCGATAACCTGTT GGGTATCGATTACGACGTGCTCAATCGCGGCAAGCGTTCAGTGGCAGTGG ATCTGAAGTCAGAGCAGGGCTTTGAAACAGCATTAGAGTTGTTGTCTCGC GCAGACGTTTTGATTGAAGGCTTTCGACCTGGCGTGATGGAGCGCTTGGA GCTCGGCCCCGAAGATTGTTGGGAGGCAAATCCCGCACTGGTTTACGCGC GCATGACAGGCTGGGGTCAAGACGGTCCTCTGGCGAGCAGTGCCGGTCAC GATATTAATTACATCGCACTCAGTGGCGCACTCAGTGCCTTTGGTGACAA AGACGGCAAACCGGTGATGCCGGTGAATCTACTCGGTGATTTCGGTGGCG GCGCTTTGTACCTTGCCTTCGGTATCATGGCAGCAGTGTATGAAGCGAAG AGCAGTGGCAAGGGTCAAGTGGTGGACGCTGCAATCAGCGACTGCACAGC ACACTTGAGCACGATGCTGCACGGTTTGATGTTTAACAACCGTTGGCAAG ATCAGCGCGGTAGCAATCTGCTCGACGGCGGCGCGCATCATTACAATTCA TACCGTTGTGCTGACGATAAGTGGATTTCGGTTGGGCCATTAGAGCCGAA ATTCTATGCGGAGTTTTTGCAAAAGGTTGGTTTGGCTGACGACGTGAGAT TTGCGGGTGTAATGGATTCTGCCAGATGGCCAGAGCTGAAACTGTTGCTA GAGGAGTTGTTCCAGAGCCAGAACAGTAACCACTGGTGTGAGTTGTTGGA GGGGACGGACTGTTGTTTCGCACCGGTGTTGGGCCTTAGCGAAGCACCGC ACCATCCGCACAATGTAGCGCGTGGTGTGTTCGAGACACACGATGATTGT GTACAGCCTGCACCTGCCCCGCGATTTAGCCGCACACCAGGTGGTATCCA CCGATCACCCCCGAAACCAGGGCAGCACAGCCATGAAGTGTTGCGCGAAT GGAGAAGTGTCGATGACTGACAAGAGACCCCAGGCAGTACCCACTGTACA GCTGGACAACGACAAGGTGCTGGTGACTGAGTGGCGCTTTCCACCCGGTG GCGAGACAGGCTGGCACCGGCACGGTATGGATTACGTTGTGGTGCCACAG ACGACAGGGCAGTTGTTGATCGAGCTTTCAGATGGAGAGATGCGCGCTGA CTTAACGACCGGTGTTGCCTACGCGCGAGTGGAAGGCACTGAGCATAATG TGGTCAACGACAACGACTTTGAATTTGTCTTCGTAGAAGTGGAGTTGAAG TAG
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Synonyms
The feature 'carnitine dehydratase' has the following synonyms
Synonym
Tk04850
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