carnitine dehydratase, snap_masked-scaffold1_size3401120-processed-gene-1.35 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of carnitine dehydratase vs. L. salmonis genes
Match: EMLSAG00000001226 (supercontig:LSalAtl2s:LSalAtl2s11:421277:423175:1 gene:EMLSAG00000001226 transcript:EMLSAT00000001226 description:"maker-LSalAtl2s11-augustus-gene-4.11") HSP 1 Score: 189.119 bits (479), Expect = 3.023e-57 Identity = 98/215 (45.58%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDY-DVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQD-GPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYE--AKSSGKGQVVDAAISDCTAHLSTMLH-GLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDNLHL 210 GA V+R++ + Y DV RGK+S++++LKS +G +L++ +DV +E FRPGVME+L+L P+ + NP+L+YAR++G+GQ+ PL AGHDINYI+LSGALS G + KPV P+N++GDFGGG L AFGI+AA+YE SSGKGQ++D I+ ++LST L+ + W + RG N+LD GAH Y Y + ++ Sbjct: 27 FGASVIRVDNHPD----AVVYPDVSCRGKKSISLNLKSSKGRSIVKKLVNNSDVFLESFRPGVMEKLQLCPDVLTKENPSLIYARLSGYGQEHNPLTYRAGHDINYISLSGALSKIGRVNEKPVPPINIVGDFGGGGLTCAFGIIAALYERSVNSSGKGQIIDCGITQGASYLSTWLYQSKNIPHLWGNPRGENVLDTGAHFYEVYETKEPGKYI 237
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|71152390|sp|Q9HAC7.2|SUCHY_HUMAN (RecName: Full=Succinate--hydroxymethylglutarate CoA-transferase; AltName: Full=Dermal papilla-derived protein 13; AltName: Full=SuccinylCoA:glutarate-CoA transferase; Flags: Precursor) HSP 1 Score: 104.375 bits (259), Expect = 1.055e-23 Identity = 66/204 (32.35%), Postives = 105/204 (51.47%), Query Frame = 0 Query: 1 MGADVVRLER--------RQGDNLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISD----CTAHLST-MLHGLMFNNRWQDQRGS 188 +GA+V+++ER G +G + Y +NR K+S+AV++K +G + EL + DV +E + PG + + LG ED E P ++Y +TG+GQ GP++ AG+D A+SG + G ++G PV P + D G LY IMA + + +GKG +D + C +H++ L G RW GS Sbjct: 72 LGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVNRNKKSIAVNIKDPKGVKIIKELAAVCDVFVENYVPGKLSAMGLGYEDIDEIAPHIIYCSITGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATG-LYAYGAIMAGLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTAHGS 274
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|39931122|sp|Q89QH2.1|FCTA_BRADU (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase) HSP 1 Score: 101.679 bits (252), Expect = 6.516e-23 Identity = 64/181 (35.36%), Postives = 100/181 (55.25%), Query Frame = 0 Query: 1 MGADVVRLERR--------QGDNLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLS 170 GADV+++ER Q ++ +D + +LN KRS+ +D K+ +G E EL+ + DVL+E F PGV++R+ E + NP ++ A + G+G GP ++ GA S G +DG P++ +GD G G L+LA GI+ A+Y+ SGKGQ V AA+ D +L+ Sbjct: 29 FGADVIKVERPGVGDITRGQLQDIPNVDSLYFTMLNHNKRSITLDTKNPKGKEVLTELIKKCDVLVENFGPGVLDRMGFPWEKIQQINPKMIVASIKGFG-PGPYEDCKVYENVAQCTGGAASTTGFRDGLPLVTGAQIGDSGTG-LHLALGIVTALYQRTHSGKGQRVTAAMQDGVLNLA 207
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|122296649|sp|Q07Q82.1|FCTA_RHOP5 (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase) HSP 1 Score: 100.523 bits (249), Expect = 1.565e-22 Identity = 63/181 (34.81%), Postives = 99/181 (54.70%), Query Frame = 0 Query: 1 MGADVVRLERR--------QGDNLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLS 170 GADV+++ER Q +L +D + +LN KRS+ +D K+ +G E EL+ DVL+E F PGV++R+ E NP ++ A + G+G GP ++ GA S G +DG P++ +GD G G L+LA GI+ A+Y+ ++G+GQ V AA+ D +L+ Sbjct: 29 FGADVIKVERPGVGDITRGQLQDLPNVDSLYFTMLNHNKRSITLDTKNPKGKEVLTELIKTCDVLVENFGPGVLDRMGFPWEKIQSINPKMIVASIKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRDGPPLVTGAQIGDSGTG-LHLALGIVTALYQRTTTGRGQRVTAAMQDGVLNLT 207
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|158513275|sp|A5EGD7.1|FCTA_BRASB (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase) HSP 1 Score: 98.9821 bits (245), Expect = 6.098e-22 Identity = 63/180 (35.00%), Postives = 98/180 (54.44%), Query Frame = 0 Query: 1 MGADVVRLERR--------QGDNLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHL 169 GADV+++ER Q ++ +D + +LN KRS+ +D K+ +G E EL+ + DVL+E F PGV++R+ E NP ++ A + G+G GP ++ GA S G +DG P++ +GD G G L+LA GI+ A+Y+ +GKGQ V AA+ D +L Sbjct: 29 FGADVIKVERPGVGDITRGQLQDIPNVDSLYFTMLNHNKRSITLDTKNPKGKEVLTELIKKCDVLVENFGPGVLDRMGFPWEKIQAINPKMIVASIKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRDGLPLVTGAQIGDSGTG-LHLALGIVTALYQRTHTGKGQRVTAAMQDGVLNL 206
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|158514229|sp|A4YXN2.1|FCTA_BRASO (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase) HSP 1 Score: 98.2117 bits (243), Expect = 1.213e-21 Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 0 Query: 1 MGADVVRLERR--------QGDNLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHL 169 GADV+++ER Q ++ +D + +LN KRS+ +D K+ +G E EL+ + DVL+E F PGV++R+ E NP ++ A + G+G GP ++ GA S G +DG P++ +GD G G L+LA GI+ A+Y+ +G+GQ V AA+ D +L Sbjct: 29 FGADVIKVERPGVGDITRGQLQDIPNVDSLYFTMLNHNKRSITLDTKNPKGKEVLTELIKKCDVLVENFGPGVLDRMGFPWEKIQAINPKMIVASIKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRDGLPLVTGAQIGDSGTG-LHLALGIVTALYQRTHTGRGQRVTAAMQDGVLNL 206
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|123749132|sp|Q139H7.1|FCTA_RHOPS (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase) HSP 1 Score: 97.8265 bits (242), Expect = 1.638e-21 Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = 0 Query: 1 MGADVVRLERR--------QGDNLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLS 170 GADV+++ER Q ++ +D + +LN KRS+ +D K+ +G E L+ DVL+E F PGV++R+ + E NP ++ A + G+G GP ++ GA S G +DG P++ +GD G G L+LA GI+ A+Y+ + +G+GQ V AA+ D +LS Sbjct: 29 FGADVIKVERPGTGDITRGQLQDIPKVDSLYFTMLNHNKRSITLDTKNPKGKEVLTALIRSCDVLVENFGPGVLDRMGFTWDKIQEINPRMIVASIKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRDGPPLVTGAQIGDSGTG-LHLALGIVTALYQRQHTGRGQRVTAAMQDGVLNLS 207
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|123292329|sp|Q2IUI7.1|FCTA_RHOP2 (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase) HSP 1 Score: 96.6709 bits (239), Expect = 3.446e-21 Identity = 62/181 (34.25%), Postives = 98/181 (54.14%), Query Frame = 0 Query: 1 MGADVVRLERR--------QGDNLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLS 170 GADV+++ER Q ++ +D + +LN KRS+ +D K+ +G E L+ DVL+E F PGV++R+ + E NP ++ A + G+G GP ++ GA S G +DG P++ +GD G G L+LA GI+ A+Y+ +G+GQ V AA+ D +LS Sbjct: 29 FGADVIKVERPGTGDITRGQLQDIPKVDSLYFTMLNHNKRSITLDTKNPKGKEVLTALIRSCDVLVENFGPGVLDRMGFTWDKIQEINPRMIVASIKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRDGPPLVTGAQIGDSGTG-LHLALGIVTALYQRHHTGRGQRVTAAMQDGVLNLS 207
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|122476608|sp|Q217M3.1|FCTA_RHOPB (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase) HSP 1 Score: 96.6709 bits (239), Expect = 3.506e-21 Identity = 62/181 (34.25%), Postives = 97/181 (53.59%), Query Frame = 0 Query: 1 MGADVVRLERR--------QGDNLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLS 170 GADV+++ER Q ++ +D + +LN KRS+ +D K+ +G E L+ DVL+E F PGV++R+ E NP ++ A + G+G GP ++ GA S G +DG P++ +GD G G L+LA GI+ A+Y+ +G+GQ V AA+ D +LS Sbjct: 29 FGADVIKVERPGVGDITRGQLQDIPNVDSLYFTMLNHNKRSITLDTKNPKGKEVLTALIKSCDVLVENFGPGVLDRMGFSWEKIQSLNPKMIVASIKGFGP-GPYEDCKVYENVAQCTGGAASTTGFRDGLPLVTGAQIGDSGTG-LHLALGIVTALYQRTVTGRGQKVTAAMQDGVLNLS 207
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|408360016|sp|Q7TNE1.2|SUCHY_MOUSE (RecName: Full=Succinate--hydroxymethylglutarate CoA-transferase; AltName: Full=SuccinylCoA:glutarate-CoA transferase; Flags: Precursor) HSP 1 Score: 97.0561 bits (240), Expect = 3.555e-21 Identity = 64/204 (31.37%), Postives = 102/204 (50.00%), Query Frame = 0 Query: 1 MGADVVRLERR-QGD----------NLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVD-----AAISDCTAHLSTMLHGLMFNNRWQDQRGS 188 +GA+V+++ER GD N + +NR K+S+AV++K +G EL + DV +E + PG + + LG ED + P ++Y +TG+GQ GP++ AG+D A+SG + G +DG PV P + D G L+ IMA + + +GKG +D + ++ T + L G RW GS Sbjct: 63 LGAEVIKVERPGAGDDTRSWGPPFVNTESTYFLSVNRNKKSIAVNIKDPRGVRIVKELAAICDVFVENYVPGKLSEMGLGYEDIDKIAPHIIYCSITGYGQTGPMSHRAGYDAIASAMSGLMHITGPEDGDPVRPGVAMTDLATG-LFAYGAIMAGLLQRYRTGKGLFIDCNLLSSQVACLTQVAANYLIGQKEAKRWGTAHGS 265
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|657341763|sp|Q5V468.2|MCT_HALMA (RecName: Full=Succinyl-CoA:mesaconate CoA-transferase) HSP 1 Score: 94.7449 bits (234), Expect = 1.243e-20 Identity = 64/187 (34.22%), Postives = 95/187 (50.80%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNL--------------LGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQ----DGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHL 169 MGADVV++ER GD + G + +NRGKRS+ ++L +++ E L L+ RADV++E F+ G ME+ + G E E NP L+Y+ + G+G + D+ AL G + G DG P +GD L A GI+AAV+ + +G+GQ VD A+ D L Sbjct: 28 MGADVVKVERPGGDLIRSNPPFVSDGDEEAYGGYFQSVNRGKRSLELNLGTDEDREAFLSLVERADVVVENFKAGTMEKFDCGYETLREHNPDLIYSSIRGFGDPRTGETHRQGQPSFDLIAQALGGVMEITGQSDGPPTKVGPGVGDLFTAVLN-AVGILAAVHHRERTGEGQYVDTAMYDSMVSL 213
BLAST of carnitine dehydratase vs. nr
Match: gi|1222215597|ref|WP_090270218.1| (CoA transferase [Litorimicrobium taeanense] >gi|1103310055|emb|SEQ59434.1| alpha-methylacyl-CoA racemase [Litorimicrobium taeanense]) HSP 1 Score: 275.404 bits (703), Expect = 4.866e-87 Identity = 130/207 (62.80%), Postives = 168/207 (81.16%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDN 207 +GADVVRLER Q YDVL+RG+RSV+VDLKS++G +TAL+L+S+AD LIEGFRPGVMERL LGPE C E NPALV+ RMTGWGQ GPLA++AGHDINYI+L+GAL+A G + PV P+NL+GDFGGG++YLA GI++A+ EAKSSG+GQVVDAA++D AHL ++++ + RW D+R SNLLDG A Y +++CAD++ Sbjct: 28 LGADVVRLERPQNGASKESAYDVLSRGRRSVSVDLKSKEGVDTALQLISKADALIEGFRPGVMERLGLGPEVCLELNPALVFGRMTGWGQFGPLANAAGHDINYISLTGALAAIGTAESGPVAPLNLVGDFGGGSMYLAIGILSAILEAKSSGQGQVVDAAMTDGAAHLMSLMYSMKNAGRWSDERASNLLDGSAPFYGTFKCADES 234
BLAST of carnitine dehydratase vs. nr
Match: gi|1200334498|gb|OUU54944.1| (carnitine dehydratase [Proteobacteria bacterium TMED61]) HSP 1 Score: 273.863 bits (699), Expect = 2.042e-86 Identity = 134/206 (65.05%), Postives = 162/206 (78.64%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFG-DKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGADVVR++R G N LG+ DVLNRG+RSVA++LKS +G T LEL++RAD +IEGFRPGVMERL LGP++C NP LVY RMTGWGQDGPLA +AGHDINYIA++G L A G DK P P+NL+GDFGGGALYLAFG++ A+ E + SGKGQVVDAA+ D AHL TM++GL+ +W DQR NLLDGGAH Y ++ CAD Sbjct: 30 MGADVVRIDREGGTNPLGLKVDVLNRGRRSVALNLKSSEGVTTCLELIARADAVIEGFRPGVMERLGLGPDECLAKNPRLVYGRMTGWGQDGPLAQAAGHDINYIAIAGVLDAIGTDKAVTP--PLNLVGDFGGGALYLAFGVVXALLEVRGSGKGQVVDAAMVDGAAHLMTMMYGLLQQGQWTDQRQDNLLDGGAHFYGTFECAD 233
BLAST of carnitine dehydratase vs. nr
Match: gi|737775053|ref|WP_035743063.1| (CoA transferase [Haematobacter missouriensis] >gi|672903451|gb|KFI33057.1| hypothetical protein CG51_16005 [Haematobacter missouriensis] >gi|1207784202|gb|OWJ79830.1| CoA transferase [Haematobacter missouriensis] >gi|1207791367|gb|OWJ86583.1| CoA transferase [Haematobacter missouriensis]) HSP 1 Score: 265.774 bits (678), Expect = 2.611e-83 Identity = 132/205 (64.39%), Postives = 162/205 (79.02%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGA+V+R+ER ++LLG+DYD+LNRG+ + +DLK+ + TA L+SRAD LIEG RPGVMERL LGP D E NP LVY RMTGWGQ GPLA +AGHDINYI+LSGAL A G ++ P +P+NL+GDFGGGALYLAFG+ AA+ EA SG+GQVVDAAI+D TAHL +M++G+ RWQD+RG+NLLDGGA Y YRCAD Sbjct: 32 MGAEVIRIERPGSESLLGLDYDILNRGRGFIRLDLKNAEDRTTARGLVSRADALIEGMRPGVMERLGLGPSDFPE-NPKLVYGRMTGWGQTGPLAPAAGHDINYISLSGALHAIGPEE-MPAVPLNLIGDFGGGALYLAFGMAAALLEAARSGRGQVVDAAITDGTAHLMSMIYGMRAGGRWQDRRGANLLDGGAPEYGCYRCAD 234
BLAST of carnitine dehydratase vs. nr
Match: gi|1208952285|ref|WP_088215052.1| (CoA transferase [Haematobacter genomosp. 1] >gi|1207783421|gb|OWJ79076.1| CoA transferase [Haematobacter genomosp. 1]) HSP 1 Score: 265.003 bits (676), Expect = 5.255e-83 Identity = 131/205 (63.90%), Postives = 162/205 (79.02%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGA+V+R+ER ++LLG+DYD+LNRG+ + +DLK+ + TA L+SRAD LIEG RPGVMERL LGP+D E NP LVY RMTGWGQ GPLA +AGHDINYI+LSGAL A G ++ P +P+NL+GDFGGGALYLAFG+ AA+ EA SG+GQVVDAAI+D T HL +M++G+ RWQD+RG+NLLDGGA Y YRCAD Sbjct: 29 MGAEVIRIERPGSESLLGLDYDILNRGRGFIRLDLKNAEDRATARALVSRADALIEGMRPGVMERLGLGPDDFPE-NPRLVYGRMTGWGQTGPLAPAAGHDINYISLSGALHAIGPQE-MPAVPLNLIGDFGGGALYLAFGMAAALLEAARSGRGQVVDAAITDGTVHLMSMIYGMRAGGRWQDRRGANLLDGGAPEYGCYRCAD 231
BLAST of carnitine dehydratase vs. nr
Match: gi|1200313573|gb|OUU34746.1| (carnitine dehydratase [Proteobacteria bacterium TMED51] >gi|1200337527|gb|OUU57862.1| carnitine dehydratase [Candidatus Endolissoclinum sp. TMED55]) HSP 1 Score: 265.003 bits (676), Expect = 5.465e-83 Identity = 129/205 (62.93%), Postives = 158/205 (77.07%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGADVVR++R G N L + DVLNRG+RSVA++LK+ +G TAL L++RAD +IEG+RPGVMERL LGPE+C NP LVY RMTGWGQ GPLA +AGHDINYIAL+G L A G D P+NL+GDFGGGALYLAFG++ A+ EA+ SG+GQVVDAA+ D AHL TM++GL +W D+R NLLDGGAH Y ++ CAD Sbjct: 28 MGADVVRIDREGGSNPLDLKIDVLNRGRRSVALNLKTPEGIATALALIARADAVIEGYRPGVMERLGLGPEECLAKNPCLVYGRMTGWGQAGPLAHAAGHDINYIALTGVLDAIG-TDESVTPPLNLVGDFGGGALYLAFGVVCALLEARGSGEGQVVDAAMVDGAAHLMTMMYGLTQQGKWTDKRQDNLLDGGAHFYGAFECAD 231
BLAST of carnitine dehydratase vs. nr
Match: gi|1226714884|ref|WP_093967043.1| (CoA transferase [Confluentimicrobium lipolyticum] >gi|1219650352|emb|SMX41709.1| E-cinnamoyl-CoA:R-phenyllactate CoA transferase [Confluentimicrobium lipolyticum]) HSP 1 Score: 264.233 bits (674), Expect = 9.894e-83 Identity = 129/203 (63.55%), Postives = 159/203 (78.33%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRC 203 MGA+++R+ER +LLG++YD+LNRG+ V +DLKSE G TA L+++AD LIEG RPGVMERL LGP+D NP LVY RMTGWGQDGPLA +AGHDINYIALSGAL A G + PV P+NLLGDFGGG +YLA G++ A++EAK+SGKGQVVDAAI+D TAHL +M++ L WQD+RG+NLLDG A Y +YRC Sbjct: 30 MGAEIIRIERPGNKHLLGLEYDILNRGRGFVELDLKSEDGKATARRLIAQADGLIEGMRPGVMERLGLGPDDLQSFNPRLVYGRMTGWGQDGPLAHAAGHDINYIALSGALHAIGPAE-APVPPLNLLGDFGGGGMYLALGLVCAMFEAKTSGKGQVVDAAITDGTAHLMSMIYALRQGGHWQDKRGANLLDGAAPFYGTYRC 231
BLAST of carnitine dehydratase vs. nr
Match: gi|1224610351|ref|WP_092629905.1| (CoA transferase [Actinopolyspora mzabensis] >gi|1086777869|emb|SDK63335.1| alpha-methylacyl-CoA racemase [Actinopolyspora mzabensis]) HSP 1 Score: 263.077 bits (671), Expect = 7.192e-82 Identity = 131/205 (63.90%), Postives = 156/205 (76.10%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 +GADVVR+ER G + D+LNRGKRSV VDLK E+G ET L L RAD+L+EGFRPGV ERL +GPE C+E NP LVY RMTGWGQDGPLA +AGHDI+YIALSG L GD DG P +PVNLLGDFGGGA+YLA G++AA A++ G GQVVDA+I D +AHL+TMLHG++ W +RGSNLLDGGA Y+ Y +D Sbjct: 38 LGADVVRVERPSGGS---GKEDLLNRGKRSVRVDLKHERGPETVLALAERADILLEGFRPGVAERLGVGPEPCFERNPDLVYGRMTGWGQDGPLAETAGHDIDYIALSGVLHTIGDADGPPRVPVNLLGDFGGGAMYLAVGVLAAQLRARAGGGGQVVDASIVDGSAHLATMLHGMLATGGWNTRRGSNLLDGGAPFYDVYATSD 239
BLAST of carnitine dehydratase vs. nr
Match: gi|653156164|ref|WP_027405177.1| (CoA transferase [Aquaspirillum serpens]) HSP 1 Score: 261.922 bits (668), Expect = 9.301e-82 Identity = 126/207 (60.87%), Postives = 159/207 (76.81%), Query Frame = 0 Query: 1 MGADVVRLER--RQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 +GADVVR+ER + L D+LNR +R + +DLKS+ G TALE +++AD LIEGFRPGVMERL LGP C E NP LVY RMTGWGQ G L+ +AGHDINY++LSGAL A G+ GKPV+P+NL+ D GGGA++LAFG++AA+ +AK +G+GQVVDAA++D A L TM+H LM +WQ RGSNLLDGGAH Y++YRCAD Sbjct: 29 LGADVVRIERANQHIGALFDPKLDILNRNRRVITLDLKSQDGLNTALEFITQADALIEGFRPGVMERLGLGPAVCLEKNPKLVYGRMTGWGQHGALSHAAGHDINYLSLSGALHAIGEHGGKPVVPLNLVADCGGGAMFLAFGVLAALLDAKRTGQGQVVDAAMTDGCATLMTMMHTLMAMQQWQPMRGSNLLDGGAHFYDTYRCAD 235
BLAST of carnitine dehydratase vs. nr
Match: gi|1270411657|gb|PHS04863.1| (carnitine dehydratase [Acidithiobacillus sp.]) HSP 1 Score: 260.766 bits (665), Expect = 2.046e-81 Identity = 122/205 (59.51%), Postives = 154/205 (75.12%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGADVVR++R+ DY +LNRG+RS+A+DLK ET L L+ +AD L EGFRPGVMERL LGP+ C+ NPA+VY RMTGWGQ GPL+ +AGHDINYIAL+GAL A G+ D PV P+NL+GDFGGGA+YLAFG+M ++E +SSG+GQ+VD A++D AHL M++ L + W D RGSN LDGGAH Y ++ CAD Sbjct: 17 MGADVVRVDRKSPTAGFDKDYQILNRGRRSIALDLKDPDDLETVLRLIEKADALXEGFRPGVMERLGLGPDVCFMRNPAIVYGRMTGWGQAGPLSHAAGHDINYIALTGALHAIGNVDQGPVPPLNLVGDFGGGAMYLAFGLMCGLHEVQSSGQGQIVDVAMTDGAAHLMAMMYSLKHSQMWSDVRGSNFLDGGAHFYGTFECAD 221
BLAST of carnitine dehydratase vs. nr
Match: gi|737738090|ref|WP_035706797.1| (CoA transferase [Haematobacter massiliensis] >gi|672902115|gb|KFI31734.1| CoA-transferase [Haematobacter massiliensis] >gi|1207776208|gb|OWJ72214.1| CoA transferase [Haematobacter massiliensis] >gi|1207792847|gb|OWJ87974.1| CoA transferase [Haematobacter massiliensis]) HSP 1 Score: 260.766 bits (665), Expect = 2.180e-81 Identity = 131/205 (63.90%), Postives = 160/205 (78.05%), Query Frame = 0 Query: 1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205 MGA+V+R+ER ++LLG++YD+LNRG+ + +DLK+ + TA L+SRAD LIEG RPGVMERL LGP D E NP LVY RMTGWGQ GPLAS+AGHDINYI+LSGAL A G ++ P +P+NL+GDFGGGALYLAFG+ AA+ EA SGKGQVVDAAI+D T HL +M++G+ WQD+RG NLLDGGA Y YRCAD Sbjct: 29 MGAEVIRIERPGSESLLGLEYDILNRGRGFIRLDLKTAEDRATARALVSRADALIEGMRPGVMERLGLGPGDFPE-NPRLVYGRMTGWGQTGPLASAAGHDINYISLSGALHAIGPEE-APAVPLNLIGDFGGGALYLAFGMAAALLEAARSGKGQVVDAAITDGTVHLMSMIYGMRAGGCWQDRRGVNLLDGGAPEYGCYRCAD 231 The following BLAST results are available for this feature:
BLAST of carnitine dehydratase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of carnitine dehydratase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of carnitine dehydratase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold1_size3401120:176202..177504- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold1_size3401120-processed-gene-1.35 ID=snap_masked-scaffold1_size3401120-processed-gene-1.35|Name=carnitine dehydratase|organism=Tigriopus kingsejongensis|type=gene|length=1303bp|location=Sequence derived from alignment at scaffold1_size3401120:176202..177504- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'carnitine dehydratase' has the following synonyms
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