carnitine dehydratase, snap_masked-scaffold1_size3401120-processed-gene-1.35 (gene) Tigriopus kingsejongensis

Overview
Namecarnitine dehydratase
Unique Namesnap_masked-scaffold1_size3401120-processed-gene-1.35
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of carnitine dehydratase vs. L. salmonis genes
Match: EMLSAG00000001226 (supercontig:LSalAtl2s:LSalAtl2s11:421277:423175:1 gene:EMLSAG00000001226 transcript:EMLSAT00000001226 description:"maker-LSalAtl2s11-augustus-gene-4.11")

HSP 1 Score: 189.119 bits (479), Expect = 3.023e-57
Identity = 98/215 (45.58%), Postives = 142/215 (66.05%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDY-DVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQD-GPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYE--AKSSGKGQVVDAAISDCTAHLSTMLH-GLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDNLHL 210
             GA V+R++         + Y DV  RGK+S++++LKS +G     +L++ +DV +E FRPGVME+L+L P+   + NP+L+YAR++G+GQ+  PL   AGHDINYI+LSGALS  G  + KPV P+N++GDFGGG L  AFGI+AA+YE    SSGKGQ++D  I+   ++LST L+      + W + RG N+LD GAH Y  Y   +   ++
Sbjct:   27 FGASVIRVDNHPD----AVVYPDVSCRGKKSISLNLKSSKGRSIVKKLVNNSDVFLESFRPGVMEKLQLCPDVLTKENPSLIYARLSGYGQEHNPLTYRAGHDINYISLSGALSKIGRVNEKPVPPINIVGDFGGGGLTCAFGIIAALYERSVNSSGKGQIIDCGITQGASYLSTWLYQSKNIPHLWGNPRGENVLDTGAHFYEVYETKEPGKYI 237          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|226700866|sp|B6JE29.1|FCTA_OLICO (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase)

HSP 1 Score: 95.1301 bits (235), Expect = 1.425e-20
Identity = 61/180 (33.89%), Postives = 95/180 (52.78%), Query Frame = 0
Query:    1 MGADVVRLERR-QGD----------NLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHL 169
             GADV+++ER   GD          N   + + +LN  KRS+ +D K+ +G E    L+   DV++E F PGV++R+    E+  + NP L+ A + G+G  GP      ++       G+ S  G +DG P++    +GD G G L+LA GI+ A++    SGKGQ V  A+ D   +L
Sbjct:   29 FGADVIKVERPGTGDITRGQLQDVPNADSLYFTMLNHNKRSITLDAKNPKGKEVLTALIKSCDVMVENFAPGVLDRMGFSWENIQKINPKLIVASIKGFGP-GPFEDCKVYENVAQCTGGSASTTGFRDGLPLVTGAQIGDSGTG-LHLALGIVTALFHRTHSGKGQRVTVAMQDSVLNL 206          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|71152392|sp|Q68FU4.1|SUCHY_RAT (RecName: Full=Succinate--hydroxymethylglutarate CoA-transferase; AltName: Full=SuccinylCoA:glutarate-CoA transferase; Flags: Precursor)

HSP 1 Score: 94.7449 bits (234), Expect = 1.735e-20
Identity = 67/224 (29.91%), Postives = 108/224 (48.21%), Query Frame = 0
Query:    1 MGADVVRLERR-QGD----------NLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVD-----AAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDNL 208
            +GA+V+++ER   GD          N     +  +NR K+S+AV++K  +G     EL +  DV +E + PG +  + LG  D  +  P +VY  +TG+GQ GP++  AG+D    A+SG +   G +DG PV P   + D   G L+    IMA + +   +GKG  +D     + ++  T   +  L G     RW    GS +       Y +++  D  L
Sbjct:   63 LGAEVIKVERPGAGDDTRSWGPPFVNTESTYFLSVNRNKKSIAVNIKDPRGVRIVKELAAICDVFVENYVPGKLSEMGLGYADIDKIAPHIVYCSITGYGQTGPMSHRAGYDAIASAMSGLMHITGPEDGDPVRPGVAMTDLATG-LFAYGAIMAGLIQRYRTGKGLFIDCNLLSSQVACLTQVAANYLIGQKEAKRWGTAHGSIV------PYQAFKTKDGYL 279          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|57012792|sp|Q6N8F8.2|FCTA_RHOPA (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase)

HSP 1 Score: 94.3597 bits (233), Expect = 2.629e-20
Identity = 61/180 (33.89%), Postives = 97/180 (53.89%), Query Frame = 0
Query:    1 MGADVVRLERR--------QGDNLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHL 169
             GADV+++ER         Q  ++  +D   + +LN  KRS+ +D K+ +G E    L+   DVL+E F PGV++R+    E   E NP ++ A + G+G  GP      ++       GA S  G ++G P++    +GD G G L+LA GI+ A+Y+   +G+GQ V AA+ D   +L
Sbjct:   29 FGADVIKVERPGSGDITRGQLQDIPKVDSLYFTMLNHNKRSITLDTKNPKGKEVLTALIRTCDVLVENFGPGVLDRMGFTWEKIQEINPRMIVASIKGFGP-GPYEDCKVYENVAQCTGGAASTTGFREGLPLVTGAQIGDSGTG-LHLALGIVTALYQRHHTGRGQRVTAAMQDGVLNL 206          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|226700867|sp|B3QBS6.1|FCTA_RHOPT (RecName: Full=Formyl-CoA:oxalate CoA-transferase; Short=FCOCT; AltName: Full=Formyl-coenzyme A transferase; Short=Formyl-CoA transferase)

HSP 1 Score: 94.3597 bits (233), Expect = 2.732e-20
Identity = 61/180 (33.89%), Postives = 97/180 (53.89%), Query Frame = 0
Query:    1 MGADVVRLERR--------QGDNLLGID---YDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHL 169
             GADV+++ER         Q  ++  +D   + +LN  KRS+ +D K+ +G E    L+   DVL+E F PGV++R+    E   E NP ++ A + G+G  GP      ++       GA S  G ++G P++    +GD G G L+LA GI+ A+Y+   +G+GQ V AA+ D   +L
Sbjct:   29 FGADVIKVERPGSGDITRGQLQDIPKVDSLYFTMLNHNKRSITLDTKNPKGKEVLTALIRTCDVLVENFGPGVLDRMGFTWEKIQEINPRMIVASIKGFGP-GPYEDCKVYENVAQCTGGAASTTGFREGLPLVTGAQIGDSGTG-LHLALGIVTALYQRHHTGRGQRVTAAMQDGVLNL 206          
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|667467188|sp|A9WC39.1|SMTB_CHLAA (RecName: Full=Succinyl-CoA--L-malate CoA-transferase beta subunit >gi|667467189|sp|Q1KLK0.1|SMTB_CHLAU RecName: Full=Succinyl-CoA--L-malate CoA-transferase beta subunit)

HSP 1 Score: 90.8929 bits (224), Expect = 3.103e-19
Identity = 65/216 (30.09%), Postives = 104/216 (48.15%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLL-----------GIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMP-VNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLS-TMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRC 203
             GADV+++E   G + L            + +   +R KRSV ++L+  +G     EL++ +DVL E FRPG +E+  LG +   + NP L+  R+TG+GQ GP     G      A+ G     G   G PV P    L D+  G LY   G++ A+   + +G+GQ +DAA+ +     S  ++       + +++ GS        HYN + C
Sbjct:   34 FGADVLKVEHPIGGDALRRFGTPTARGDTLTWLSESRNKRSVTLNLQHPEGARVFKELIAHSDVLCENFRPGTLEKWGLGWDVLSKINPRLIMLRVTGYGQTGPYRDRPGFARIAHAVGGIAYLAGMPKGTPVTPGSTTLADYMTG-LYGCIGVLLALRHREQTGRGQYIDAALYESVFRCSDELVPAYGMYRKVRERHGS--------HYNEFAC 240          
BLAST of carnitine dehydratase vs. nr
Match: gi|1222215597|ref|WP_090270218.1| (CoA transferase [Litorimicrobium taeanense] >gi|1103310055|emb|SEQ59434.1| alpha-methylacyl-CoA racemase [Litorimicrobium taeanense])

HSP 1 Score: 275.404 bits (703), Expect = 4.866e-87
Identity = 130/207 (62.80%), Postives = 168/207 (81.16%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCADDN 207
            +GADVVRLER Q        YDVL+RG+RSV+VDLKS++G +TAL+L+S+AD LIEGFRPGVMERL LGPE C E NPALV+ RMTGWGQ GPLA++AGHDINYI+L+GAL+A G  +  PV P+NL+GDFGGG++YLA GI++A+ EAKSSG+GQVVDAA++D  AHL ++++ +    RW D+R SNLLDG A  Y +++CAD++
Sbjct:   28 LGADVVRLERPQNGASKESAYDVLSRGRRSVSVDLKSKEGVDTALQLISKADALIEGFRPGVMERLGLGPEVCLELNPALVFGRMTGWGQFGPLANAAGHDINYISLTGALAAIGTAESGPVAPLNLVGDFGGGSMYLAIGILSAILEAKSSGQGQVVDAAMTDGAAHLMSLMYSMKNAGRWSDERASNLLDGSAPFYGTFKCADES 234          
BLAST of carnitine dehydratase vs. nr
Match: gi|1200334498|gb|OUU54944.1| (carnitine dehydratase [Proteobacteria bacterium TMED61])

HSP 1 Score: 273.863 bits (699), Expect = 2.042e-86
Identity = 134/206 (65.05%), Postives = 162/206 (78.64%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFG-DKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            MGADVVR++R  G N LG+  DVLNRG+RSVA++LKS +G  T LEL++RAD +IEGFRPGVMERL LGP++C   NP LVY RMTGWGQDGPLA +AGHDINYIA++G L A G DK   P  P+NL+GDFGGGALYLAFG++ A+ E + SGKGQVVDAA+ D  AHL TM++GL+   +W DQR  NLLDGGAH Y ++ CAD
Sbjct:   30 MGADVVRIDREGGTNPLGLKVDVLNRGRRSVALNLKSSEGVTTCLELIARADAVIEGFRPGVMERLGLGPDECLAKNPRLVYGRMTGWGQDGPLAQAAGHDINYIAIAGVLDAIGTDKAVTP--PLNLVGDFGGGALYLAFGVVXALLEVRGSGKGQVVDAAMVDGAAHLMTMMYGLLQQGQWTDQRQDNLLDGGAHFYGTFECAD 233          
BLAST of carnitine dehydratase vs. nr
Match: gi|737775053|ref|WP_035743063.1| (CoA transferase [Haematobacter missouriensis] >gi|672903451|gb|KFI33057.1| hypothetical protein CG51_16005 [Haematobacter missouriensis] >gi|1207784202|gb|OWJ79830.1| CoA transferase [Haematobacter missouriensis] >gi|1207791367|gb|OWJ86583.1| CoA transferase [Haematobacter missouriensis])

HSP 1 Score: 265.774 bits (678), Expect = 2.611e-83
Identity = 132/205 (64.39%), Postives = 162/205 (79.02%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            MGA+V+R+ER   ++LLG+DYD+LNRG+  + +DLK+ +   TA  L+SRAD LIEG RPGVMERL LGP D  E NP LVY RMTGWGQ GPLA +AGHDINYI+LSGAL A G ++  P +P+NL+GDFGGGALYLAFG+ AA+ EA  SG+GQVVDAAI+D TAHL +M++G+    RWQD+RG+NLLDGGA  Y  YRCAD
Sbjct:   32 MGAEVIRIERPGSESLLGLDYDILNRGRGFIRLDLKNAEDRTTARGLVSRADALIEGMRPGVMERLGLGPSDFPE-NPKLVYGRMTGWGQTGPLAPAAGHDINYISLSGALHAIGPEE-MPAVPLNLIGDFGGGALYLAFGMAAALLEAARSGRGQVVDAAITDGTAHLMSMIYGMRAGGRWQDRRGANLLDGGAPEYGCYRCAD 234          
BLAST of carnitine dehydratase vs. nr
Match: gi|1208952285|ref|WP_088215052.1| (CoA transferase [Haematobacter genomosp. 1] >gi|1207783421|gb|OWJ79076.1| CoA transferase [Haematobacter genomosp. 1])

HSP 1 Score: 265.003 bits (676), Expect = 5.255e-83
Identity = 131/205 (63.90%), Postives = 162/205 (79.02%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            MGA+V+R+ER   ++LLG+DYD+LNRG+  + +DLK+ +   TA  L+SRAD LIEG RPGVMERL LGP+D  E NP LVY RMTGWGQ GPLA +AGHDINYI+LSGAL A G ++  P +P+NL+GDFGGGALYLAFG+ AA+ EA  SG+GQVVDAAI+D T HL +M++G+    RWQD+RG+NLLDGGA  Y  YRCAD
Sbjct:   29 MGAEVIRIERPGSESLLGLDYDILNRGRGFIRLDLKNAEDRATARALVSRADALIEGMRPGVMERLGLGPDDFPE-NPRLVYGRMTGWGQTGPLAPAAGHDINYISLSGALHAIGPQE-MPAVPLNLIGDFGGGALYLAFGMAAALLEAARSGRGQVVDAAITDGTVHLMSMIYGMRAGGRWQDRRGANLLDGGAPEYGCYRCAD 231          
BLAST of carnitine dehydratase vs. nr
Match: gi|1200313573|gb|OUU34746.1| (carnitine dehydratase [Proteobacteria bacterium TMED51] >gi|1200337527|gb|OUU57862.1| carnitine dehydratase [Candidatus Endolissoclinum sp. TMED55])

HSP 1 Score: 265.003 bits (676), Expect = 5.465e-83
Identity = 129/205 (62.93%), Postives = 158/205 (77.07%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            MGADVVR++R  G N L +  DVLNRG+RSVA++LK+ +G  TAL L++RAD +IEG+RPGVMERL LGPE+C   NP LVY RMTGWGQ GPLA +AGHDINYIAL+G L A G  D     P+NL+GDFGGGALYLAFG++ A+ EA+ SG+GQVVDAA+ D  AHL TM++GL    +W D+R  NLLDGGAH Y ++ CAD
Sbjct:   28 MGADVVRIDREGGSNPLDLKIDVLNRGRRSVALNLKTPEGIATALALIARADAVIEGYRPGVMERLGLGPEECLAKNPCLVYGRMTGWGQAGPLAHAAGHDINYIALTGVLDAIG-TDESVTPPLNLVGDFGGGALYLAFGVVCALLEARGSGEGQVVDAAMVDGAAHLMTMMYGLTQQGKWTDKRQDNLLDGGAHFYGAFECAD 231          
BLAST of carnitine dehydratase vs. nr
Match: gi|1226714884|ref|WP_093967043.1| (CoA transferase [Confluentimicrobium lipolyticum] >gi|1219650352|emb|SMX41709.1| E-cinnamoyl-CoA:R-phenyllactate CoA transferase [Confluentimicrobium lipolyticum])

HSP 1 Score: 264.233 bits (674), Expect = 9.894e-83
Identity = 129/203 (63.55%), Postives = 159/203 (78.33%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRC 203
            MGA+++R+ER    +LLG++YD+LNRG+  V +DLKSE G  TA  L+++AD LIEG RPGVMERL LGP+D    NP LVY RMTGWGQDGPLA +AGHDINYIALSGAL A G  +  PV P+NLLGDFGGG +YLA G++ A++EAK+SGKGQVVDAAI+D TAHL +M++ L     WQD+RG+NLLDG A  Y +YRC
Sbjct:   30 MGAEIIRIERPGNKHLLGLEYDILNRGRGFVELDLKSEDGKATARRLIAQADGLIEGMRPGVMERLGLGPDDLQSFNPRLVYGRMTGWGQDGPLAHAAGHDINYIALSGALHAIGPAE-APVPPLNLLGDFGGGGMYLALGLVCAMFEAKTSGKGQVVDAAITDGTAHLMSMIYALRQGGHWQDKRGANLLDGAAPFYGTYRC 231          
BLAST of carnitine dehydratase vs. nr
Match: gi|1224610351|ref|WP_092629905.1| (CoA transferase [Actinopolyspora mzabensis] >gi|1086777869|emb|SDK63335.1| alpha-methylacyl-CoA racemase [Actinopolyspora mzabensis])

HSP 1 Score: 263.077 bits (671), Expect = 7.192e-82
Identity = 131/205 (63.90%), Postives = 156/205 (76.10%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            +GADVVR+ER  G +      D+LNRGKRSV VDLK E+G ET L L  RAD+L+EGFRPGV ERL +GPE C+E NP LVY RMTGWGQDGPLA +AGHDI+YIALSG L   GD DG P +PVNLLGDFGGGA+YLA G++AA   A++ G GQVVDA+I D +AHL+TMLHG++    W  +RGSNLLDGGA  Y+ Y  +D
Sbjct:   38 LGADVVRVERPSGGS---GKEDLLNRGKRSVRVDLKHERGPETVLALAERADILLEGFRPGVAERLGVGPEPCFERNPDLVYGRMTGWGQDGPLAETAGHDIDYIALSGVLHTIGDADGPPRVPVNLLGDFGGGAMYLAVGVLAAQLRARAGGGGQVVDASIVDGSAHLATMLHGMLATGGWNTRRGSNLLDGGAPFYDVYATSD 239          
BLAST of carnitine dehydratase vs. nr
Match: gi|653156164|ref|WP_027405177.1| (CoA transferase [Aquaspirillum serpens])

HSP 1 Score: 261.922 bits (668), Expect = 9.301e-82
Identity = 126/207 (60.87%), Postives = 159/207 (76.81%), Query Frame = 0
Query:    1 MGADVVRLER--RQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            +GADVVR+ER  +    L     D+LNR +R + +DLKS+ G  TALE +++AD LIEGFRPGVMERL LGP  C E NP LVY RMTGWGQ G L+ +AGHDINY++LSGAL A G+  GKPV+P+NL+ D GGGA++LAFG++AA+ +AK +G+GQVVDAA++D  A L TM+H LM   +WQ  RGSNLLDGGAH Y++YRCAD
Sbjct:   29 LGADVVRIERANQHIGALFDPKLDILNRNRRVITLDLKSQDGLNTALEFITQADALIEGFRPGVMERLGLGPAVCLEKNPKLVYGRMTGWGQHGALSHAAGHDINYLSLSGALHAIGEHGGKPVVPLNLVADCGGGAMFLAFGVLAALLDAKRTGQGQVVDAAMTDGCATLMTMMHTLMAMQQWQPMRGSNLLDGGAHFYDTYRCAD 235          
BLAST of carnitine dehydratase vs. nr
Match: gi|1270411657|gb|PHS04863.1| (carnitine dehydratase [Acidithiobacillus sp.])

HSP 1 Score: 260.766 bits (665), Expect = 2.046e-81
Identity = 122/205 (59.51%), Postives = 154/205 (75.12%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            MGADVVR++R+        DY +LNRG+RS+A+DLK     ET L L+ +AD L EGFRPGVMERL LGP+ C+  NPA+VY RMTGWGQ GPL+ +AGHDINYIAL+GAL A G+ D  PV P+NL+GDFGGGA+YLAFG+M  ++E +SSG+GQ+VD A++D  AHL  M++ L  +  W D RGSN LDGGAH Y ++ CAD
Sbjct:   17 MGADVVRVDRKSPTAGFDKDYQILNRGRRSIALDLKDPDDLETVLRLIEKADALXEGFRPGVMERLGLGPDVCFMRNPAIVYGRMTGWGQAGPLSHAAGHDINYIALTGALHAIGNVDQGPVPPLNLVGDFGGGAMYLAFGLMCGLHEVQSSGQGQIVDVAMTDGAAHLMAMMYSLKHSQMWSDVRGSNFLDGGAHFYGTFECAD 221          
BLAST of carnitine dehydratase vs. nr
Match: gi|737738090|ref|WP_035706797.1| (CoA transferase [Haematobacter massiliensis] >gi|672902115|gb|KFI31734.1| CoA-transferase [Haematobacter massiliensis] >gi|1207776208|gb|OWJ72214.1| CoA transferase [Haematobacter massiliensis] >gi|1207792847|gb|OWJ87974.1| CoA transferase [Haematobacter massiliensis])

HSP 1 Score: 260.766 bits (665), Expect = 2.180e-81
Identity = 131/205 (63.90%), Postives = 160/205 (78.05%), Query Frame = 0
Query:    1 MGADVVRLERRQGDNLLGIDYDVLNRGKRSVAVDLKSEQGFETALELLSRADVLIEGFRPGVMERLELGPEDCWEANPALVYARMTGWGQDGPLASSAGHDINYIALSGALSAFGDKDGKPVMPVNLLGDFGGGALYLAFGIMAAVYEAKSSGKGQVVDAAISDCTAHLSTMLHGLMFNNRWQDQRGSNLLDGGAHHYNSYRCAD 205
            MGA+V+R+ER   ++LLG++YD+LNRG+  + +DLK+ +   TA  L+SRAD LIEG RPGVMERL LGP D  E NP LVY RMTGWGQ GPLAS+AGHDINYI+LSGAL A G ++  P +P+NL+GDFGGGALYLAFG+ AA+ EA  SGKGQVVDAAI+D T HL +M++G+     WQD+RG NLLDGGA  Y  YRCAD
Sbjct:   29 MGAEVIRIERPGSESLLGLEYDILNRGRGFIRLDLKTAEDRATARALVSRADALIEGMRPGVMERLGLGPGDFPE-NPRLVYGRMTGWGQTGPLASAAGHDINYISLSGALHAIGPEE-APAVPLNLIGDFGGGALYLAFGMAAALLEAARSGKGQVVDAAITDGTVHLMSMIYGMRAGGCWQDRRGVNLLDGGAPEYGCYRCAD 231          
The following BLAST results are available for this feature:
BLAST of carnitine dehydratase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000012263.023e-5745.58supercontig:LSalAtl2s:LSalAtl2s11:421277:423175:1 ... [more]
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BLAST of carnitine dehydratase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|226700866|sp|B6JE29.1|FCTA_OLICO1.425e-2033.89RecName: Full=Formyl-CoA:oxalate CoA-transferase; ... [more]
gi|71152392|sp|Q68FU4.1|SUCHY_RAT1.735e-2029.91RecName: Full=Succinate--hydroxymethylglutarate Co... [more]
gi|57012792|sp|Q6N8F8.2|FCTA_RHOPA2.629e-2033.89RecName: Full=Formyl-CoA:oxalate CoA-transferase; ... [more]
gi|226700867|sp|B3QBS6.1|FCTA_RHOPT2.732e-2033.89RecName: Full=Formyl-CoA:oxalate CoA-transferase; ... [more]
gi|667467188|sp|A9WC39.1|SMTB_CHLAA3.103e-1930.09RecName: Full=Succinyl-CoA--L-malate CoA-transfera... [more]

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BLAST of carnitine dehydratase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1222215597|ref|WP_090270218.1|4.866e-8762.80CoA transferase [Litorimicrobium taeanense] >gi|11... [more]
gi|1200334498|gb|OUU54944.1|2.042e-8665.05carnitine dehydratase [Proteobacteria bacterium TM... [more]
gi|737775053|ref|WP_035743063.1|2.611e-8364.39CoA transferase [Haematobacter missouriensis] >gi|... [more]
gi|1208952285|ref|WP_088215052.1|5.255e-8363.90CoA transferase [Haematobacter genomosp. 1] >gi|12... [more]
gi|1200313573|gb|OUU34746.1|5.465e-8362.93carnitine dehydratase [Proteobacteria bacterium TM... [more]
gi|1226714884|ref|WP_093967043.1|9.894e-8363.55CoA transferase [Confluentimicrobium lipolyticum] ... [more]
gi|1224610351|ref|WP_092629905.1|7.192e-8263.90CoA transferase [Actinopolyspora mzabensis] >gi|10... [more]
gi|653156164|ref|WP_027405177.1|9.301e-8260.87CoA transferase [Aquaspirillum serpens][more]
gi|1270411657|gb|PHS04863.1|2.046e-8159.51carnitine dehydratase [Acidithiobacillus sp.][more]
gi|737738090|ref|WP_035706797.1|2.180e-8163.90CoA transferase [Haematobacter massiliensis] >gi|6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1_size3401120supercontigscaffold1_size3401120:176202..177504 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold1_size3401120-processed-gene-1.35-mRNA-1snap_masked-scaffold1_size3401120-processed-gene-1.35-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1_size3401120:176202..177504-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold1_size3401120-processed-gene-1.35 ID=snap_masked-scaffold1_size3401120-processed-gene-1.35|Name=carnitine dehydratase|organism=Tigriopus kingsejongensis|type=gene|length=1303bp|location=Sequence derived from alignment at scaffold1_size3401120:176202..177504- (Tigriopus kingsejongensis)
ATGGGTGCTGACGTGGTGCGCTTGGAACGCCGTCAAGGCGATAACCTGTT GGGTATCGATTACGACGTGCTCAATCGCGGCAAGCGTTCAGTGGCAGTGG ATCTGAAGTCAGAGCAGGGCTTTGAAACAGCATTAGAGTTGTTGTCTCGC GCAGACGTTTTGATTGAAGGCTTTCGACCTGGCGTGATGGAGCGCTTGGA GCTCGGCCCCGAAGATTGTTGGGAGGCAAATCCCGCACTGGTTTACGCGC GCATGACAGGCTGGGGTCAAGACGGTCCTCTGGCGAGCAGTGCCGGTCAC GATATTAATTACATCGCACTCAGTGGCGCACTCAGTGCCTTTGGTGACAA AGACGGCAAACCGGTGATGCCGGTGAATCTACTCGGTGATTTCGGTGGCG GCGCTTTGTACCTTGCCTTCGGTATCATGGCAGCAGTGTATGAAGCGAAG AGCAGTGGCAAGGGTCAAGTGGTGGACGCTGCAATCAGCGACTGCACAGC ACACTTGAGCACGATGCTGCACGGTTTGATGTTTAACAACCGTTGGCAAG ATCAGCGCGGTAGCAATCTGCTCGACGGCGGCGCGCATCATTACAATTCA TACCGTTGTGCTGACGATAAGTGGATTTCGGTTGGGCCATTAGAGCCGAA ATTCTATGCGGAGTTTTTGCAAAAGGTTGGTTTGGCTGACGACGTGAGAT TTGCGGGTGTAATGGATTCTGCCAGATGGCCAGAGCTGAAACTGTTGCTA GAGGAGTTGTTCCAGAGCCAGAACAGTAACCACTGGTGTGAGTTGTTGGA GGGGACGGACTGTTGTTTCGCACCGGTGTTGGGCCTTAGCGAAGCACCGC ACCATCCGCACAATGTAGCGCGTGGTGTGTTCGAGACACACGATGATTGT GTACAGCCTGCACCTGCCCCGCGATTTAGCCGCACACCAGGTGGTATCCA CCGATCACCCCCGAAACCAGGGCAGCACAGCCATGAAGTGTTGCGCGAAT GGAGAAGTGTCGATGACTGACAAGAGACCCCAGGCAGTACCCACTGTACA GCTGGACAACGACAAGGTGCTGGTGACTGAGTGGCGCTTTCCACCCGGTG GCGAGACAGGCTGGCACCGGCACGGTATGGATTACGTTGTGGTGCCACAG ACGACAGGGCAGTTGTTGATCGAGCTTTCAGATGGAGAGATGCGCGCTGA CTTAACGACCGGTGTTGCCTACGCGCGAGTGGAAGGCACTGAGCATAATG TGGTCAACGACAACGACTTTGAATTTGTCTTCGTAGAAGTGGAGTTGAAG TAG
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Synonyms
The feature 'carnitine dehydratase' has the following synonyms
Synonym
Tk04850
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