u6 snrna-associated sm-like protein lsm7, snap_masked-scaffold2587_size14210-processed-gene-0.0 (gene) Tigriopus kingsejongensis

Overview


Name	u6 snrna-associated sm-like protein lsm7
Unique Name	snap_masked-scaffold2587_size14210-processed-gene-0.0
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. L. salmonis genes
Match: EMLSAG00000007532 (supercontig:LSalAtl2s:LSalAtl2s433:295864:298706:1 gene:EMLSAG00000007532 transcript:EMLSAT00000007532 description:"maker-LSalAtl2s433-snap-gene-2.14")

HSP 1 Score: 162.54 bits (410), Expect = 7.180e-53
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 0

Query:   49 MAHPPPKTTEGPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            M+      T     +KRKKE IL++++YLEK +RVKF GGRECSG LKGYDPLLN+V+DN TEYLRDPDDPYKLT+DTR LGLVVCRGT + LICP +GME+I NPF+ +
Sbjct:    1 MSSGTASNTGASSADKRKKEXILELARYLEKDIRVKFIGGRECSGTLKGYDPLLNLVLDNVTEYLRDPDDPYKLTEDTRPLGLVVCRGTGIVLICPQEGMESISNPFIAQ 110

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. L. salmonis genes
Match: EMLSAG00000011451 (supercontig:LSalAtl2s:LSalAtl2s790:153888:154192:-1 gene:EMLSAG00000011451 transcript:EMLSAT00000011451 description:"maker-LSalAtl2s790-snap-gene-1.50")

HSP 1 Score: 45.8246 bits (107), Expect = 1.250e-7
Identity = 23/79 (29.11%), Postives = 42/79 (53.16%), Query Frame = 0

Query:   72 DMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIV----IDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMD 146
            ++ K+++K V++K    R   GIL+GYDP +N+V    I+ T +  R+P            +G +V RG ++ ++   D
Sbjct:   10 ELKKFMDKRVQLKLNASRNMEGILRGYDPFMNLVLEEGIETTKQGHRNP------------VGTIVIRGNSIVMLEAKD 76

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Match: gi|52783146|sp|Q9CQQ8.1|LSM7_MOUSE (RecName: Full=U6 snRNA-associated Sm-like protein LSm7)

HSP 1 Score: 168.703 bits (426), Expect = 6.149e-54
Identity = 76/96 (79.17%), Postives = 88/96 (91.67%), Query Frame = 0

Query:   63 EKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            EK+KKESILD+SKY++KT+RVKF GGRE SGILKG+DPLLN+V+D T EY+RDPDD YKLT+DTR LGLVVCRGT+V LICP DGMEAIPNPFVQ+
Sbjct:    5 EKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQQ 100

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Match: gi|10720075|sp|Q9UK45.1|LSM7_HUMAN (RecName: Full=U6 snRNA-associated Sm-like protein LSm7)

HSP 1 Score: 168.318 bits (425), Expect = 8.355e-54
Identity = 75/96 (78.12%), Postives = 88/96 (91.67%), Query Frame = 0

Query:   63 EKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            EK+KKESILD+SKY++KT+RVKF GGRE SGILKG+DPLLN+V+D T EY+RDPDD YKLT+DTR LGLVVCRGT+V LICP DGMEAIPNPF+Q+
Sbjct:    5 EKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQ 100

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Match: gi|75265880|sp|Q9SI54.1|LSM7_ARATH (RecName: Full=Sm-like protein LSM7; Short=AtLSM7; AltName: Full=Protein EMBRYO DEFECTIVE 2816; AltName: Full=U6 snRNA-associated Sm-like protein LSM7)

HSP 1 Score: 124.02 bits (310), Expect = 1.828e-36
Identity = 54/91 (59.34%), Postives = 71/91 (78.02%), Query Frame = 0

Query:   66 KKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFV 156
            +KE++LD++K+++K V+VK  GGR+ +G LKGYD LLN+V+D   E++RD DDP K TD TR LGL+VCRGTAV L+ P DG E I NPFV
Sbjct:    4 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Match: gi|74852197|sp|Q54HF6.1|LSM7_DICDI (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm7)

HSP 1 Score: 117.087 bits (292), Expect = 1.151e-33
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 0

Query:   66 KKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPF 155
            KKESILD+ K+L K + VKF GGRE  GILKGYD L+NI +D T E++RD +DP   TD+ R LGLVVCRG++V ++CP +G E I NP+
Sbjct:    8 KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Match: gi|74626865|sp|O74499.1|LSM7_SCHPO (RecName: Full=U6 snRNA-associated Sm-like protein LSm7)

HSP 1 Score: 117.087 bits (292), Expect = 1.861e-33
Identity = 57/110 (51.82%), Postives = 77/110 (70.00%), Query Frame = 0

Query:   48 IMAHPPPKTTEGPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQ 157
            +   P P  +  P  E+ +KESILD+S+Y ++ ++  F GGR+ +GILKG+D L+N+V+D+  E LR+P+D  KLT   R LGLVV RGT + LI PMDG E IPNPFVQ
Sbjct:    4 LQKRPGPGNSSQPT-ERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPED-GKLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQ 111

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Match: gi|150421590|sp|P53905.2|LSM7_YEAST (RecName: Full=U6 snRNA-associated Sm-like protein LSm7)

HSP 1 Score: 85.8853 bits (211), Expect = 2.870e-21
Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 0

Query:   49 MAHPPPKTTEGPQPEKRK-----KESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYK---LTDDTRHLGLVVCRGTAVTLICPMDGMEAI 151
            M     K+   PQ +++K     +E+ILD++KY +  +RVK  GG+   G+LKGYD L+N+V+D+T EY+ +PDD      ++ + R LGL V RGT +  +   +G + +
Sbjct:    1 MHQQHSKSENKPQQQRKKFEGPKREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRGTILVSLSSAEGSDVL 111

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Match: gi|29428065|sp|Q9VXE0.1|RUXG_DROME (RecName: Full=Probable small nuclear ribonucleoprotein G; Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G; Short=SmG)

HSP 1 Score: 58.9214 bits (141), Expect = 3.265e-11
Identity = 25/75 (33.33%), Postives = 48/75 (64.00%), Query Frame = 0

Query:   72 DMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMD 146
            ++ KY++K + +K  GGR  +GIL+G+DP +N+V+D+T E  +D        +   ++G+VV RG ++ ++  +D
Sbjct:    8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKD--------NTKNNIGMVVIRGNSIVMVEALD 74

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Match: gi|29428018|sp|Q9N4G9.1|RUXG_CAEEL (RecName: Full=Probable small nuclear ribonucleoprotein G; Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G; Short=SmG)

HSP 1 Score: 58.9214 bits (141), Expect = 3.346e-11
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 0

Query:   72 DMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICP 144
            ++ KY++K + +K  G R  SGIL+G+DP +N+VID   EY +D          + +LG+ V RG +V ++ P
Sbjct:    8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD--------GGSVNLGMTVIRGNSVVIMEP 72

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Match: gi|74854860|sp|Q54RX0.1|RUXG_DICDI (RecName: Full=Probable small nuclear ribonucleoprotein G; Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G; Short=SmG)

HSP 1 Score: 56.6102 bits (135), Expect = 3.383e-10
Identity = 26/81 (32.10%), Postives = 48/81 (59.26%), Query Frame = 0

Query:   72 DMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIP 152
            D++K L+K + +K  G R   GIL+G+D  +NI + +T E +  P + Y+       +G+V+ RG ++ L+ P++ M  +P
Sbjct:   10 DLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVV-SPTEKYE-------IGMVIIRGNSILLMEPLESMAYVP 82

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Match: gi|59800216|sp|P62308.1|RUXG_HUMAN (RecName: Full=Small nuclear ribonucleoprotein G; Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G; Short=SmG >gi|59800217|sp|P62309.1|RUXG_MOUSE RecName: Full=Small nuclear ribonucleoprotein G; Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G; Short=SmG >gi|109894862|sp|Q3ZBL0.1|RUXG_BOVIN RecName: Full=Small nuclear ribonucleoprotein G; Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G; Short=SmG)

HSP 1 Score: 52.7582 bits (125), Expect = 7.712e-9
Identity = 22/71 (30.99%), Postives = 41/71 (57.75%), Query Frame = 0

Query:   72 DMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLI 142
            ++ K+++K + +K  GGR   GIL+G+DP +N+VID   E           +    ++G+VV RG ++ ++
Sbjct:    8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGMVVIRGNSIIML 70

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Match: gi|1344767387|ref|XP_023943204.1| (U6 snRNA-associated Sm-like protein LSm7 [Bicyclus anynana])

HSP 1 Score: 181.8 bits (460), Expect = 1.611e-56
Identity = 82/104 (78.85%), Postives = 96/104 (92.31%), Query Frame = 0

Query:   55 KTTEGPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            K+++G   EKR+KESILD+SKYLEK++RVKFAGGRE +GILKGYDPLLN+V+DNTTEYLRDPDDPYKL +DTR LGLVVCRGT+V LICPMDGMEAIPNPF+ +
Sbjct:   10 KSSQGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEYLRDPDDPYKLLEDTRALGLVVCRGTSVVLICPMDGMEAIPNPFITQ 113

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Match: gi|1080042269|ref|XP_018562180.1| (U6 snRNA-associated Sm-like protein LSm7 isoform X2 [Anoplophora glabripennis])

HSP 1 Score: 181.415 bits (459), Expect = 2.638e-56
Identity = 82/100 (82.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query:   59 GPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            G Q EK++KESILD+SKYLEKT+RVKFAGGRE SGILKGYDPLLN+V+DNT+EYLRDPDDPYKLTDDTR LGLVVCRGT+V LICPMDGME+I NPF+ +
Sbjct:   15 GEQKEKKRKESILDLSKYLEKTIRVKFAGGREASGILKGYDPLLNLVLDNTSEYLRDPDDPYKLTDDTRELGLVVCRGTSVVLICPMDGMESIQNPFITQ 114

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Match: gi|1080042267|ref|XP_018562179.1| (U6 snRNA-associated Sm-like protein LSm7 isoform X1 [Anoplophora glabripennis])

HSP 1 Score: 181.415 bits (459), Expect = 3.069e-56
Identity = 82/100 (82.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query:   59 GPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            G Q EK++KESILD+SKYLEKT+RVKFAGGRE SGILKGYDPLLN+V+DNT+EYLRDPDDPYKLTDDTR LGLVVCRGT+V LICPMDGME+I NPF+ +
Sbjct:   17 GEQKEKKRKESILDLSKYLEKTIRVKFAGGREASGILKGYDPLLNLVLDNTSEYLRDPDDPYKLTDDTRELGLVVCRGTSVVLICPMDGMESIQNPFITQ 116

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Match: gi|91089491|ref|XP_969723.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Tribolium castaneum] >gi|1004396713|gb|EFA09312.2| putative small nuclear ribonucleoprotein G-like Protein [Tribolium castaneum])

HSP 1 Score: 179.874 bits (455), Expect = 8.629e-56
Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = 0

Query:   55 KTTEGPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            K   G Q EK++KESILD+SKYLEKT+RVKFAGGRE SGILKGYDPLLN+V+DNT EYLRDPDDPYKLT+DTR LGLVVCRGT+V LICPMDGME+I NPF+ +
Sbjct:    9 KNQSGDQKEKKRKESILDLSKYLEKTIRVKFAGGREASGILKGYDPLLNLVLDNTIEYLRDPDDPYKLTEDTRALGLVVCRGTSVVLICPMDGMESIQNPFISQ 112

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Match: gi|936717133|ref|XP_014236498.1| (U6 snRNA-associated Sm-like protein LSm7 [Trichogramma pretiosum])

HSP 1 Score: 178.718 bits (452), Expect = 2.129e-55
Identity = 82/105 (78.10%), Postives = 93/105 (88.57%), Query Frame = 0

Query:   54 PKTTEGPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            P + +  Q EK++KESILD+SKYLEK +RVKFAGGRE SGILKGYDPLLN+V+DNTTEYLRD DDPYKL  DTR LGLVVCRGT+V LICP+DGMEAIPNPFVQ+
Sbjct:    4 PTSAQNDQKEKKRKESILDLSKYLEKNIRVKFAGGREASGILKGYDPLLNLVLDNTTEYLRDSDDPYKLNQDTRGLGLVVCRGTSVVLICPVDGMEAIPNPFVQQ 108

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Match: gi|943939654|ref|XP_014371414.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Papilio machaon] >gi|930678797|gb|KPJ18719.1| U6 snRNA-associated Sm-like protein LSm7 [Papilio machaon])

HSP 1 Score: 179.104 bits (453), Expect = 2.153e-55
Identity = 82/103 (79.61%), Postives = 93/103 (90.29%), Query Frame = 0

Query:   56 TTEGPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            T  G   EKR+KESILD+SKYLEK++RVKFAGGRE +GILKGYDPLLN+V+DNTTE+LRDPDDPYKL DDTR LGLVVCRGT+V LICPMDGMEAIPNPF+ +
Sbjct:   14 TGTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFITQ 116

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Match: gi|114050803|ref|NP_001040136.1| (U6 snRNA-associated Sm-like protein [Bombyx mori] >gi|827558962|ref|XP_012550551.1| U6 snRNA-associated Sm-like protein isoform X1 [Bombyx mori] >gi|87248171|gb|ABD36138.1| U6 snRNA-associated Sm-like protein [Bombyx mori])

HSP 1 Score: 179.104 bits (453), Expect = 2.510e-55
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:   59 GPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            G   EKR+KESILD+SKYLEK++RVKFAGGRE +GILKGYDPLLN+V+DNTTE+LRDPDDPYKL DDTR LGLVVCRGT+V LICPMDGMEAIPNPF+ +
Sbjct:   17 GDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFINQ 116

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Match: gi|1229722510|ref|XP_022123824.1| (U6 snRNA-associated Sm-like protein LSm7 [Pieris rapae])

HSP 1 Score: 178.718 bits (452), Expect = 2.773e-55
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:   59 GPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            G   EKR+KESILD+SKYLEK++RVKFAGGRE +GILKGYDPLLN+V+DNTTEYLRDPDDPYKL DDTR LGLVVCRGT+V LICPM+GMEAIPNPF+ +
Sbjct:   17 GDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEYLRDPDDPYKLLDDTRALGLVVCRGTSVVLICPMEGMEAIPNPFIAQ 116

[Close]

BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Match: gi|930654611|gb|KPI96944.1| (U6 snRNA-associated Sm-like protein LSm7 [Papilio xuthus])

HSP 1 Score: 178.718 bits (452), Expect = 3.194e-55
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:   59 GPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            G   EKR+KESILD+SKYLEK++RVKFAGGRE +GILKGYDPLLN+V+DNTTE+LRDPDDPYKL DDTR LGLVVCRGT+V LICPMDGMEAIPNPF+ +
Sbjct:   17 GDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFITQ 116

[Close]

BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Match: gi|910352163|ref|XP_013180028.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Papilio xuthus])

HSP 1 Score: 178.718 bits (452), Expect = 3.229e-55
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:   59 GPQPEKRKKESILDMSKYLEKTVRVKFAGGRECSGILKGYDPLLNIVIDNTTEYLRDPDDPYKLTDDTRHLGLVVCRGTAVTLICPMDGMEAIPNPFVQE 158
            G   EKR+KESILD+SKYLEK++RVKFAGGRE +GILKGYDPLLN+V+DNTTE+LRDPDDPYKL DDTR LGLVVCRGT+V LICPMDGMEAIPNPF+ +
Sbjct:   17 GDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFITQ 116

The following BLAST results are available for this feature:

BLAST of u6 snrna-associated sm-like protein lsm7 vs. L. salmonis genes
BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr

BLAST of u6 snrna-associated sm-like protein lsm7 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2


Match Name	E-value	Identity	Description
EMLSAG00000007532	7.180e-53	66.36	supercontig:LSalAtl2s:LSalAtl2s433:295864:298706:1...	[more]
EMLSAG00000011451	1.250e-7	29.11	supercontig:LSalAtl2s:LSalAtl2s790:153888:154192:-...	[more]

BLAST of u6 snrna-associated sm-like protein lsm7 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 13


Match Name	E-value	Identity	Description
gi\|52783146\|sp\|Q9CQQ8.1\|LSM7_MOUSE	6.149e-54	79.17	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|10720075\|sp\|Q9UK45.1\|LSM7_HUMAN	8.355e-54	78.13	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|75265880\|sp\|Q9SI54.1\|LSM7_ARATH	1.828e-36	59.34	RecName: Full=Sm-like protein LSM7; Short=AtLSM7; ...	[more]
gi\|74852197\|sp\|Q54HF6.1\|LSM7_DICDI	1.151e-33	58.89	RecName: Full=Probable U6 snRNA-associated Sm-like...	[more]
gi\|74626865\|sp\|O74499.1\|LSM7_SCHPO	1.861e-33	51.82	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|150421590\|sp\|P53905.2\|LSM7_YEAST	2.870e-21	36.94	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|29428065\|sp\|Q9VXE0.1\|RUXG_DROME	3.265e-11	33.33	RecName: Full=Probable small nuclear ribonucleopro...	[more]
gi\|29428018\|sp\|Q9N4G9.1\|RUXG_CAEEL	3.346e-11	36.99	RecName: Full=Probable small nuclear ribonucleopro...	[more]
gi\|74854860\|sp\|Q54RX0.1\|RUXG_DICDI	3.383e-10	32.10	RecName: Full=Probable small nuclear ribonucleopro...	[more]
gi\|59800216\|sp\|P62308.1\|RUXG_HUMAN	7.712e-9	30.99	RecName: Full=Small nuclear ribonucleoprotein G; S...	[more]

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BLAST of u6 snrna-associated sm-like protein lsm7 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1344767387\|ref\|XP_023943204.1\|	1.611e-56	78.85	U6 snRNA-associated Sm-like protein LSm7 [Bicyclus...	[more]
gi\|1080042269\|ref\|XP_018562180.1\|	2.638e-56	82.00	U6 snRNA-associated Sm-like protein LSm7 isoform X...	[more]
gi\|1080042267\|ref\|XP_018562179.1\|	3.069e-56	82.00	U6 snRNA-associated Sm-like protein LSm7 isoform X...	[more]
gi\|91089491\|ref\|XP_969723.1\|	8.629e-56	78.85	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]
gi\|936717133\|ref\|XP_014236498.1\|	2.129e-55	78.10	U6 snRNA-associated Sm-like protein LSm7 [Trichogr...	[more]
gi\|943939654\|ref\|XP_014371414.1\|	2.153e-55	79.61	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]
gi\|114050803\|ref\|NP_001040136.1\|	2.510e-55	81.00	U6 snRNA-associated Sm-like protein [Bombyx mori] ...	[more]
gi\|1229722510\|ref\|XP_022123824.1\|	2.773e-55	81.00	U6 snRNA-associated Sm-like protein LSm7 [Pieris r...	[more]
gi\|930654611\|gb\|KPI96944.1\|	3.194e-55	81.00	U6 snRNA-associated Sm-like protein LSm7 [Papilio ...	[more]
gi\|910352163\|ref\|XP_013180028.1\|	3.229e-55	81.00	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold2587_size14210	supercontig	scaffold2587_size14210:581..4507 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold2587_size14210-processed-gene-0.0-mRNA-1	snap_masked-scaffold2587_size14210-processed-gene-0.0-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold2587_size14210:581..4507+

gene from alignment at scaffold2587_size14210:581..4507+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold2587_size14210-processed-gene-0.0 ID=snap_masked-scaffold2587_size14210-processed-gene-0.0|Name=u6 snrna-associated sm-like protein lsm7|organism=Tigriopus kingsejongensis|type=gene|length=3927bp|location=Sequence derived from alignment at scaffold2587_size14210:581..4507+ (Tigriopus kingsejongensis)
ATGGGCGAGGGTGTGCGCTGGGACCATGAGAACGAGGATGAAGAGAACCT
CATCCTCGGACGGAATACCAAGCATTGTTGGCCAAAGGAGGGACCCACCT
TTTTTTCATTTAGTGATCAAGAATTCCGGGTCTCATGGGGCGAACTTAGG
ACAAAAAAACCAACGCTTTTTTGGCTGGGCGGGGATAGCGATCCTTTCCA
CCACCCTGCTTGGGTTACTGTTTCTTCGCAATTCCGGACGAAACGGAAAG
ACCAAATGGCTAAAGGCCGTTTAAATTGACAACACATGTCACCCAAACAA
AGCTAGGTTGCAGAATATGTACGCTATTGCACAAGGTATTATCATATTTT
AGAGCCAAGGACCTCATACATACCGAGGTCAATTGAGCTTAGATCGAGCA
CAAATTATGTTGTTGTTTGCTCTAAGTACAGTACTTAGTTTAATTGCTCT
ACAATCTACATAGTGCGAGTTATTTATAAGCTCAAACTCATTTTTTAGAC
AAGCTGAATGAACATCATCATTAGAAGACTCGTACATTTACCGTAGGTCC
CCCGCGGTCGATAAAAAATTGGTCTTCTAACGAAATGTGGTGTTGTAAAC
TCTTCTGGGGTTCTTTTTTTCAAAGACGAATCGAGCCATCCCATGGTGAT
CCATGCACGTAGTCAAGATGCCACCGATGGCATACAGATCGGGGCTTGAG
TGTAATTGAAATGCCGTCGGATTGGGCTGCATAAAAGTGGAAAAATCGAA
AAAAAAGTGGAAAAATCGCTCGTTTCAGTCGGCGTAGTCGTTGATTCTTG
CGACCAGATTTTAGAGAAATTATGTTATTGTGCTTAATTTTGGACGTCTA
CATATGCGTATACATTTTGTACTGTAAACGCATTGCATTGTCGTACGTAG
TTGGCTTTCGGCAGGATACGAAAATGTAAATATGTAAAGGAAGCGCTGTT
GTCAAAACGCAAAGTTACCTCAAAAAATGTGCTTGCATGCAATTTTGGAG
GGGAATAACCATAGACCACGAAAATAAATCAGAAAGAAAATTATGACGGC
GATTGCTTATGAGCAGGGATCTCAAAATAATGCCTACGTAGAACGGAGTT
TGTTTTGTTTGTTTTGTTTGGAAGGACCCGGACATTTTTGTCCAGCTAGG
AAACCTCTATTGAGACATAGTCAGCCTGGCGTTCAAATTTATCATGAATT
ATTACCTTACCCTCGAGGAATTACCACAGGTCCGTCCAATTTAATCCCGC
AAAGGAAGCAAACAATAGCTGTGAGTGAACACCGCTAGTTGCCTGCCGTG
AACTGGGGAAGCACGGGATTCGAACCCCGGCCACTCAGCAACAGCGCAGC
GCTCGCTGATGACACTGAGCTATGGTGACTTCCCCTGCCTAGAACGGAGT
AAAAAATACAAAAGAATGGGCGCCAACTGCAACTGAACCTTGTATATTTT
TGCAACCTATATGGTGTATTAAGCCAGATCATGGAGTACTAGAATCACCT
GGAGGTCGCACAGAACGAAAAATGTGTCCAAAGACACAAGGGAGTCTAGG
TTCGAAAGCCGTTAATGTCATCAATTAATGGGCGGAAATTGCGCGAAATA
TTTCTCCTAGTTCCGTAGGGTTTAAGGTTGAACCTTGACCCTACGGAACT
GGTAGAAATGTATTGCACAACTCCTGTCCGTCAATTGACTGCATTAACGG
CTTTCGAGCTTCCTGAACTTTGGATTCAATCCGTCTTTGGACACATTTTC
GTTCTGTGCGACCTCCAGGTGATTCTAGTACTCCATGGCCAGATGCAGCA
GTTTGAATCCAAAGCCAGACTTGCTTCCACTGGATCAGCATCTGGTCCTT
CTGGTGGCCTCCGTGAAGCAGTTTCTCTGGCTTGAGAGGAGATCTCAAGG
ACTATGAAGGCCACAGTCTGCTTCGATGCTAGGAGACCGTTTTTGTTGAG
CTATTTTTGCATCCAAATCATGATTGAGAATACATTACTAATCCCTTACT
CAAATTTGACGTCAAATTATTGCAAAATGTATGTAGATGGTCTTTCTCGG
GGGTTTATTTCATTTGTTCCCCTTACACTAATTAGTAACCTGGGGCGGTG
GGTCGCTTATGGTTCGAGACCACGCAATATCCCATTCATTGCAAGGTATT
CGAAATGATACATTTAATTTTGTCGTTTAAAGATTCCCCAAACCGATACG
GTTCGCGAATCGAAGCACGGAACCAGCCCCAAGAGAGTAAGTCAACCGTC
AGCACAATGAGCACAATACATTTGTATTATTAAGCGCCTTTTGTTGAGTT
TGATATTCCTGTGTAAACATTTGTTGCGTTTTGTATTGTAATGTGTACTA
TTTTTCTATTTTGGTATGTAGTTTTGTCAACATCAATTTTTGCATTGTTT
AGTAGTTCTGGAAACATTAATTGTGCTTTTCCGTTATTATGTTACATTGT
GCTGTTATGTTTCTCTAGTTATCTTAGTTTTGCGCAACTACTTAATATGT
GTATATTTTTATAAATGGCCCTAACACCCACTGAAGTCCACGGCTGGTGG
CCTTGTTACCGCCCCCTTGCGCTTTAAGGCCAACACCTTTGCTATTCACG
CGGCAAGTGTGGAATTTATTTCCACCACTAAGACTTGCCCCAAGATTGGG
AGCTGCATCAAGAGTGCAAAGACAATCAGTCAGAACACACCAATCGAGTC
AAATTTCATTTCATTTTACTTCATTCCACTTATTATCACTCGACCCAACA
CGATCGACTGTGTACATCATTACTAAGCGTTGGTATATTTTTCGTAAAAA
AATAAACTAAGATTACACACACACACACTATTGACTAGCATTCGTTGGCT
AAGTGTTGACTCCCGGTTATAATCCTATTTTAATATGTAGTAATCCAACG
GAACCCAAGACCAACCGATCTCGGTTCGGAGGTCGGTTCGATCGGCCACT
GGAAGTTGATCAGTCGTCACAAAGTAATCGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCCGAACCCAAGTTACATAGTACTTATGTACAATTAACGCATGTC
TCTATCTTGAATTACATTTGGTTATGACCACGGACTGCGTAAGGCTACAT
TTCATGTAGGAATAAACGATTACACACACACACTGCTCGATTACACGGAA
TTTGCCCCTCGATCACAGTGCTTGAATGAATGGCTTTGGTAATACAGTAG
CTTTAGTTCGGACCGGTCAAAGTGGAAGTTGGAGTCACCCCAACGAGCTA
CATTGTAACTATGTCATAATATAGCTCGATGAGTCACCCTGGAAATTCAA
TTCAGCTGTCGCTTCCTCGTTGTTAGCTGTTTATTTGGGTGACTTTGCGG
GTGTCAACATCGGCACTGCTGAGAGTTGGTTCAAGTTGGACATCATGGCG
CACCCTCCACCCAAGACCACCGAGGGCCCCCAGCCGGAGAAGCGGAAGAA
GGAATCCATTCTTGACATGTCCAAATACCTGGAGAAAACCGTGCGGGTCA
AGTTCGCCGGGGGTCGGGAATGTAGCGGAATCCTCAAGGGCTACGACCCC
TTGCTCAACATTGTCATTGACAACACCACAGAGTATTTGCGCGATCCGGA
CGATCCGTACAAGCTCACCGACGACACCAGGCATCTGGGTCTGGTGGTCT
GCCGAGGCACGGCCGTCACCTTGATCTGTCCCATGGACGGGATGGAGGCC
ATTCCCAATCCCTTCGTCCAGGAGTGA

Synonyms

The feature 'u6 snrna-associated sm-like protein lsm7' has the following synonyms


Synonym
Tk06809

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