probable splicing factor 3b subunit 5, snap_masked-scaffold266_size231069-processed-gene-1.10 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of probable splicing factor 3b subunit 5 vs. L. salmonis genes
Match: EMLSAG00000011898 (supercontig:LSalAtl2s:LSalAtl2s839:2065:2987:1 gene:EMLSAG00000011898 transcript:EMLSAT00000011898 description:"maker-LSalAtl2s839-augustus-gene-0.20") HSP 1 Score: 158.303 bits (399), Expect = 8.990e-53 Identity = 70/86 (81.40%), Postives = 80/86 (93.02%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTED 86
MG+RYNIHSQLEHLQSKY+GTGHADT+K++WA NQHRDS+ASY GHFDL NHFALAENESKAR+RFN + KMIQP GPPPEK++ED
Sbjct: 1 MGDRYNIHSQLEHLQSKYIGTGHADTSKFDWAVNQHRDSFASYPGHFDLLNHFALAENESKARLRFNFMEKMIQPCGPPPEKKSED 86
BLAST of probable splicing factor 3b subunit 5 vs. SwissProt
Match: gi|20140916|sp|Q9VHI4.1|SF3B5_DROME (RecName: Full=Probable splicing factor 3B subunit 5; Short=SF3b5; AltName: Full=Pre-mRNA-splicing factor SF3b 10 kDa subunit) HSP 1 Score: 151.754 bits (382), Expect = 1.035e-48 Identity = 66/82 (80.49%), Postives = 77/82 (93.90%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEK 82
MGERYNIHSQLEHLQSKY+GTGHADTTK+EW +NQHRDS ASY+GH+D+ N+FA+AENESKARVRFNL+ +M+QP GPPPEK
Sbjct: 1 MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEK 82
BLAST of probable splicing factor 3b subunit 5 vs. SwissProt
Match: gi|20140644|sp|Q923D4.1|SF3B5_MOUSE (RecName: Full=Splicing factor 3B subunit 5; Short=SF3b5; AltName: Full=Pre-mRNA-splicing factor SF3b 10 kDa subunit) HSP 1 Score: 145.976 bits (367), Expect = 2.004e-46 Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTED 86
M +RY IHSQLEHLQSKY+GTGHADTTK+EW NQHRDSY SY+GHFDL N+FA+AENESKARVRFNL+ KM+QP GPP +K E+
Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEEN 86
BLAST of probable splicing factor 3b subunit 5 vs. SwissProt
Match: gi|20140757|sp|Q9BWJ5.1|SF3B5_HUMAN (RecName: Full=Splicing factor 3B subunit 5; Short=SF3b5; AltName: Full=Pre-mRNA-splicing factor SF3b 10 kDa subunit >gi|75052103|sp|Q56K13.1|SF3B5_BOVIN RecName: Full=Splicing factor 3B subunit 5; Short=SF3b5; AltName: Full=Pre-mRNA-splicing factor SF3b 10 kDa subunit) HSP 1 Score: 145.976 bits (367), Expect = 2.094e-46 Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTED 86
M +RY IHSQLEHLQSKY+GTGHADTTK+EW NQHRDSY SY+GHFDL N+FA+AENESKARVRFNL+ KM+QP GPP +K E+
Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEEN 86
BLAST of probable splicing factor 3b subunit 5 vs. SwissProt
Match: gi|20140479|sp|P58728.1|SF3BB_ARATH (RecName: Full=Uncharacterized protein At4g14342) HSP 1 Score: 115.546 bits (288), Expect = 2.251e-34 Identity = 49/83 (59.04%), Postives = 67/83 (80.72%), Query Frame = 0
Query: 3 ERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTE 85
+R+NI+SQLEHLQ+KY+GTGHAD +++EWA N RDSYASY+GH+ + ++FA+AENES R R+N + KM+ P G PPE+ E
Sbjct: 5 DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87
BLAST of probable splicing factor 3b subunit 5 vs. SwissProt
Match: gi|20140864|sp|Q9LW64.1|SF3BA_ARATH (RecName: Full=Uncharacterized protein At3g23325) HSP 1 Score: 114.005 bits (284), Expect = 1.057e-33 Identity = 48/83 (57.83%), Postives = 66/83 (79.52%), Query Frame = 0
Query: 3 ERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTE 85
+R+NI+SQLEHLQ+KY+GTGHAD +++EW N RDSYASY+GH+ + ++FA+AENES R R+N + KM+ P G PPE+ E
Sbjct: 5 DRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87
BLAST of probable splicing factor 3b subunit 5 vs. SwissProt
Match: gi|74858121|sp|Q55BF5.1|SF3B5_DICDI (RecName: Full=Splicing factor 3B subunit 5; Short=SF3b5; AltName: Full=Pre-mRNA-splicing factor SF3b 10 kDa subunit homolog) HSP 1 Score: 109.768 bits (273), Expect = 4.714e-32 Identity = 47/81 (58.02%), Postives = 63/81 (77.78%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPE 81
M ER +++SQLEHLQ +Y+GTGHAD +K+EW +NQHRDS +S++GH + F++AENES RVR+N L KMI P GP P+
Sbjct: 1 MSERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPK 81
BLAST of probable splicing factor 3b subunit 5 vs. SwissProt
Match: gi|20141059|sp|Q9P7R6.1|YHV5_SCHPO (RecName: Full=Uncharacterized protein C211.05) HSP 1 Score: 91.2781 bits (225), Expect = 7.962e-25 Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPP 80
M +R ++LE LQ++Y+G G+A TTKYEW NQHRD+ +S +GH L + A A E + +VR NLL KMI P GPPP
Sbjct: 1 MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80
BLAST of probable splicing factor 3b subunit 5 vs. nr
Match: gi|290562061|gb|ADD38427.1| (Probable splicing factor 3B subunit 5 [Lepeophtheirus salmonis]) HSP 1 Score: 158.303 bits (399), Expect = 8.420e-49 Identity = 70/86 (81.40%), Postives = 80/86 (93.02%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTED 86
MG+RYNIHSQLEHLQSKY+GTGHADT+K++WA NQHRDS+ASY GHFDL NHFALAENESKAR+RFN + KMIQP GPPPEK++ED
Sbjct: 1 MGDRYNIHSQLEHLQSKYIGTGHADTSKFDWAVNQHRDSFASYPGHFDLLNHFALAENESKARLRFNFMEKMIQPCGPPPEKKSED 86
BLAST of probable splicing factor 3b subunit 5 vs. nr
Match: gi|225712848|gb|ACO12270.1| (Probable splicing factor 3B subunit 5 [Lepeophtheirus salmonis]) HSP 1 Score: 157.532 bits (397), Expect = 1.474e-48 Identity = 70/86 (81.40%), Postives = 80/86 (93.02%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTED 86
MG+RYNIHSQLEHLQSKY+GTGHADT+K++WA NQHRDS+ASY GHFDL NHFALAENESKAR+RFN + KMIQP GPPPEK++ED
Sbjct: 1 MGDRYNIHSQLEHLQSKYIGTGHADTSKFDWAVNQHRDSFASYPGHFDLLNHFALAENESKARLRFNFMEKMIQPRGPPPEKKSED 86
BLAST of probable splicing factor 3b subunit 5 vs. nr
Match: gi|225709462|gb|ACO10577.1| (Probable splicing factor 3B subunit 5 [Caligus rogercresseyi]) HSP 1 Score: 156.377 bits (394), Expect = 5.384e-48 Identity = 69/86 (80.23%), Postives = 80/86 (93.02%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTED 86
MG+RYNIHSQLEHLQSKY+GTGHADT+K++WA NQHRDS+ASY GHFDL N+FALAENESKAR+RFN + KMIQP GPPPEK++ED
Sbjct: 1 MGDRYNIHSQLEHLQSKYIGTGHADTSKFDWAVNQHRDSFASYPGHFDLLNYFALAENESKARLRFNFMEKMIQPCGPPPEKKSED 86
BLAST of probable splicing factor 3b subunit 5 vs. nr
Match: gi|1325271063|ref|XP_023320137.1| (probable splicing factor 3B subunit 5 [Eurytemora affinis]) HSP 1 Score: 155.606 bits (392), Expect = 1.099e-47 Identity = 66/86 (76.74%), Postives = 81/86 (94.19%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTED 86
MG+RYNI SQ+EHLQSKYMGTGHADTTK+EWA+NQHRD+++S +GH+DLTNH A+AENESKAR++FNLL KM+QP GPPPEK++ED
Sbjct: 1 MGDRYNILSQMEHLQSKYMGTGHADTTKFEWATNQHRDTFSSLMGHYDLTNHLAIAENESKARIKFNLLEKMLQPCGPPPEKKSED 86
BLAST of probable splicing factor 3b subunit 5 vs. nr
Match: gi|195444126|ref|XP_002069726.1| (probable splicing factor 3B subunit 5 [Drosophila willistoni] >gi|194165811|gb|EDW80712.1| uncharacterized protein Dwil_GK11422 [Drosophila willistoni]) HSP 1 Score: 152.91 bits (385), Expect = 1.118e-46 Identity = 67/82 (81.71%), Postives = 77/82 (93.90%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEK 82
MGERYNIHSQLEHLQSKY+GTGHADTTKYEW +NQHRDS ASY+GH+D+ N+FA+AENESKARVRFNL+ +M+QP GPPPEK
Sbjct: 1 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEK 82
BLAST of probable splicing factor 3b subunit 5 vs. nr
Match: gi|321463477|gb|EFX74493.1| (hypothetical protein DAPPUDRAFT_231273 [Daphnia pulex] >gi|1022771275|gb|KZS15613.1| putative Splicing factor 3B subunit 5 [Daphnia magna]) HSP 1 Score: 152.525 bits (384), Expect = 1.589e-46 Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTED 86
MG+RYNIHSQLEHLQSKY+GTGHADT+++EW SNQHRDS+ASY+GHFDL NH A+AENESKARVRFN + KM+QP GPPPEK TED
Sbjct: 1 MGDRYNIHSQLEHLQSKYIGTGHADTSRHEWLSNQHRDSFASYVGHFDLLNHIAIAENESKARVRFNFMEKMLQPCGPPPEK-TED 85
BLAST of probable splicing factor 3b subunit 5 vs. nr
Match: gi|1036058234|ref|XP_016932214.1| (PREDICTED: probable splicing factor 3B subunit 5 [Drosophila suzukii] >gi|1036933033|ref|XP_016960949.1| PREDICTED: probable splicing factor 3B subunit 5 [Drosophila biarmipes]) HSP 1 Score: 152.14 bits (383), Expect = 2.520e-46 Identity = 66/85 (77.65%), Postives = 79/85 (92.94%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTE 85
MGERYNIHSQLEHLQSKY+GTGHADTTK+EW +NQHRDS ASY+GH+D+ N+FA+AENESKARVRFNL+ +M+QP GPPPEK+ +
Sbjct: 1 MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKQED 85
BLAST of probable splicing factor 3b subunit 5 vs. nr
Match: gi|918318275|gb|KOF87190.1| (hypothetical protein OCBIM_22017284mg [Octopus bimaculoides]) HSP 1 Score: 151.754 bits (382), Expect = 2.662e-46 Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEKRTED 86
MG+RYNIHSQLEHLQSKY+GTGHADT K+EW +NQHRDSYASYLGHFD+ N+F+L ENESKARVRFNL+ KM+QP GPPPE R ED
Sbjct: 1 MGDRYNIHSQLEHLQSKYIGTGHADTNKWEWLTNQHRDSYASYLGHFDMLNYFSLVENESKARVRFNLMEKMVQPCGPPPE-RPED 85
BLAST of probable splicing factor 3b subunit 5 vs. nr
Match: gi|68051667|gb|AAY85097.1| (IP03424p, partial [Drosophila melanogaster]) HSP 1 Score: 152.14 bits (383), Expect = 2.740e-46 Identity = 66/82 (80.49%), Postives = 77/82 (93.90%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEK 82
MGERYNIHSQLEHLQSKY+GTGHADTTK+EW +NQHRDS ASY+GH+D+ N+FA+AENESKARVRFNL+ +M+QP GPPPEK
Sbjct: 6 MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEK 87
BLAST of probable splicing factor 3b subunit 5 vs. nr
Match: gi|24645240|ref|NP_652189.1| (uncharacterized protein Dmel_CG11985 [Drosophila melanogaster] >gi|194903481|ref|XP_001980876.1| uncharacterized protein Dere_GG17400 [Drosophila erecta] >gi|195330524|ref|XP_002031953.1| GM26290 [Drosophila sechellia] >gi|195499302|ref|XP_002096891.1| uncharacterized protein Dyak_GE24804 [Drosophila yakuba] >gi|195572393|ref|XP_002104180.1| uncharacterized protein Dsimw501_GD20826 [Drosophila simulans] >gi|1036767693|ref|XP_017018665.1| PREDICTED: probable splicing factor 3B subunit 5 [Drosophila kikkawai] >gi|1036797974|ref|XP_017088675.1| PREDICTED: probable splicing factor 3B subunit 5 [Drosophila bipectinata] >gi|1036860836|ref|XP_017000279.1| PREDICTED: probable splicing factor 3B subunit 5 [Drosophila takahashii] >gi|1036901080|ref|XP_017071831.1| PREDICTED: probable splicing factor 3B subunit 5 [Drosophila eugracilis] >gi|1036916878|ref|XP_016981886.1| PREDICTED: probable splicing factor 3B subunit 5 [Drosophila rhopaloa] >gi|1036991441|ref|XP_017122653.1| PREDICTED: probable splicing factor 3B subunit 5 [Drosophila elegans] >gi|1037069471|ref|XP_017058560.1| PREDICTED: probable splicing factor 3B subunit 5 [Drosophila ficusphila] >gi|1189089953|ref|XP_020811905.1| probable splicing factor 3B subunit 5 [Drosophila serrata] >gi|20140916|sp|Q9VHI4.1|SF3B5_DROME RecName: Full=Probable splicing factor 3B subunit 5; Short=SF3b5; AltName: Full=Pre-mRNA-splicing factor SF3b 10 kDa subunit >gi|7299128|gb|AAF54327.1| uncharacterized protein Dmel_CG11985 [Drosophila melanogaster] >gi|190652579|gb|EDV49834.1| uncharacterized protein Dere_GG17400 [Drosophila erecta] >gi|194120896|gb|EDW42939.1| GM26290 [Drosophila sechellia] >gi|194182992|gb|EDW96603.1| uncharacterized protein Dyak_GE24804 [Drosophila yakuba] >gi|194200107|gb|EDX13683.1| GD20826 [Drosophila simulans] >gi|220951270|gb|ACL88178.1| CG11985-PA, partial [synthetic construct] >gi|220959976|gb|ACL92531.1| CG11985-PA [synthetic construct] >gi|900915265|gb|KMZ04767.1| uncharacterized protein Dsimw501_GD20826 [Drosophila simulans] >gi|1049301431|gb|ANY27615.1| GEO10186p1, partial [Drosophila melanogaster]) HSP 1 Score: 151.754 bits (382), Expect = 3.208e-46 Identity = 66/82 (80.49%), Postives = 77/82 (93.90%), Query Frame = 0
Query: 1 MGERYNIHSQLEHLQSKYMGTGHADTTKYEWASNQHRDSYASYLGHFDLTNHFALAENESKARVRFNLLAKMIQPGGPPPEK 82
MGERYNIHSQLEHLQSKY+GTGHADTTK+EW +NQHRDS ASY+GH+D+ N+FA+AENESKARVRFNL+ +M+QP GPPPEK
Sbjct: 1 MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEK 82 The following BLAST results are available for this feature:
BLAST of probable splicing factor 3b subunit 5 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of probable splicing factor 3b subunit 5 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 7
BLAST of probable splicing factor 3b subunit 5 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold266_size231069:114826..115086- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold266_size231069-processed-gene-1.10 ID=snap_masked-scaffold266_size231069-processed-gene-1.10|Name=probable splicing factor 3b subunit 5|organism=Tigriopus kingsejongensis|type=gene|length=261bp|location=Sequence derived from alignment at scaffold266_size231069:114826..115086- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'probable splicing factor 3b subunit 5' has the following synonyms
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