abc transporter, snap_masked-scaffold2803_size12270-processed-gene-0.3 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000000745 (supercontig:LSalAtl2s:LSalAtl2s111:261767:264074:1 gene:EMLSAG00000000745 transcript:EMLSAT00000000745 description:"maker-LSalAtl2s111-snap-gene-2.13") HSP 1 Score: 50.447 bits (119), Expect = 1.091e-7 Identity = 40/131 (30.53%), Postives = 62/131 (47.33%), Query Frame = 0 Query: 448 AAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQTGGA 578 A +QA+ + I L GL V + G S GQRQ + T++ IQ ++R TV+ IAHRL+TV+ ++R++V+++G+I E TLL + S + QTG A Sbjct: 11 ALEQAKLSQIISNLNGGLDAQVTDGGSNFSIGQRQLI-------------------------TDSLIQEAIRIKFSKCTVLTIAHRLNTVMDSDRMLVLSDGRIEEFDEPHTLLQNDHNLISHLVEQTGPA 116
BLAST of abc transporter vs. L. salmonis genes
Match: EMLSAG00000007911 (supercontig:LSalAtl2s:LSalAtl2s467:413568:427137:-1 gene:EMLSAG00000007911 transcript:EMLSAT00000007911 description:"maker-LSalAtl2s467-augustus-gene-3.18") HSP 1 Score: 51.6026 bits (122), Expect = 4.497e-7 Identity = 53/212 (25.00%), Postives = 98/212 (46.23%), Query Frame = 0 Query: 352 GAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQA---GSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEG-SIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAK--GRTVIMIAHRLSTVVHA--ERIVVVANGKIVEQG 555 G ++D S+E+ GG A++G+ GSGK L++++ R AQ G I L+GV ++ + + + G V+Q+ L G ++++ + Y + + + + + L L LS + +RL + L++DP VL+LDE T +D I L AK R V++ + + + +R+ + G +V G Sbjct: 53 GVILKDVSMELHGGELSAVLGSKGSGKHALLEVISR--RAQGPTRGQILLNGVPMS---MRLFQESCGXVTQKXDLLPGXTVKETLEYSANLTVGSKVGSFVKHSRVKQVMADL--ALTNLANRNSESLSQSEYRRLVIGXQLVRDPVVLLLDEPTWDLDPLNTYFIVSILANHAKKYNRIVLLTMEKPRSDIFPFLDRVTYLCLGDVVYTG 257
BLAST of abc transporter vs. SwissProt
Match: gi|1176951|sp|P45861.1|YWJA_BACSU (RecName: Full=Uncharacterized ABC transporter ATP-binding protein YwjA) HSP 1 Score: 359.762 bits (922), Expect = 3.364e-116 Identity = 206/580 (35.52%), Postives = 322/580 (55.52%), Query Frame = 0 Query: 3 YARGYRRRVILASASSIINKLFDIAPEILIGIAIDVVV-NQDTSFVASFGFETAHQQILALAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAV---LAGFLCTFVL--GGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQTG 576 Y + Y+ L S+I L +++ +++ ID ++ +D I+A ++ F ++A S QY L +++ DMR + ++H+Q+ S F++ TG L++ L +D+ + G DL ++++ V +++ +ALL F +P++IW A YF ++ + + + + +G S+R++NNIGGI +++F +E E ER A + R +SS I ++ L F+ FVL G + + G L G + V LT L P+ + I+++ R +A + + L++T DI+D + S G + + V F Y + D ++ + G T+A VG +G+GKSTL LL RFY A G I +DG+ I D+ LS LRG IG V Q+ FLF G++R+NIAYG AS E I A +QA E + +P GL T +GERG+ LSGGQ+QRL++AR LK+P +L+LDEATSA+D ETEAAIQ++L+ L++GRT ++IAHRL+T+ A+RIVVV N I EQG H L+ A G Y Q G Sbjct: 8 YYKPYKTLFFLDFFSAIAGGLMELSFPLIVNYFIDTLLPGRDWGL------------IIATSIGLFAVYALSSALQYIVTYWGHMLGINIETDMRKSLFDHLQKLSFKFYDNNKTGTLMSKLTNDLMYIGEVAHHGPEDLFIAVMTILGAFGVMLFINWQLALLTFIIMPIVIWLALYFNKKMTKAFTTLNKDIGDFSARVENNIGGIRLVQAFGNEAFEKERF-----AVNNQRFRVTKLSSYKIMAKNGSISYMLTRFVTLFVLLCGTWFVIRGSLSYGEFVAFVLLTNVLFRPIDKINAIIEMYPRGIAGFKSYMELMETEPDIQDSPDSKDVSGLKGNIRYKHVSFGYDDHHNVLNDINLSIQAGETVAFVGPSGAGKSTLCSLLPRFYEASEGDITIDGISIKDMTLSSLRGQIGVVQQDVFLFSGTLRENIAYGRLGASEEDIWQAVKQAHLEELVHNMPDGLDTMIGERGVKLSGGQKQRLSIARMFLKNPSILILDEATSALDTETEAAIQKALQELSEGRTTLVIAHRLATIKDADRIVVVTNNGIEEQGRHQDLIEAGGLYSRLHQAQFG 570
BLAST of abc transporter vs. SwissProt
Match: gi|226693608|sp|O31707.3|YKNU_BACSU (RecName: Full=Uncharacterized ABC transporter ATP-binding protein YknU) HSP 1 Score: 320.472 bits (820), Expect = 6.213e-101 Identity = 174/481 (36.17%), Postives = 267/481 (55.51%), Query Frame = 0 Query: 95 MRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRY-RAGGAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQ 574 +R YE +QR S +++ TGDL++ L DV L FL G +LI+ + V +V FY S + L+ + +P + + F +R P + +R+ L++++Q NI GI T+KS + E + + +A Y + ++ SA+ P++ + GG+ + +L G L ++WP+ +L I++F +A AS R+L +L+ DI D A G V F V Y + + + S E G + L+G TGSGKS++ +LL RFYS G I +D I D L LR IG V QE FLF +IR NI+YG P AS+E + AA++A+A FI LP G T +GERG+ LSGGQ+QR+A+ARA+ +P +L+LD+ATSAVD +TE +IQ +L+ + K RT ++AHR+S++ HA+ I+V G+I E+G H LL G+Y + +Q Sbjct: 91 LRNGLYEKLQRLSFSYYDNAKTGDLMSRLTADVEGLRFFLSYGLAELIRFGLLVAISLSVMFYYSVPLTLVTIAVLPFLAVAVYRFDKRVHPAFRGIRKSFAKLNTKVQENISGINTVKSLSREDFQISTFNKANAEYRAQYLQTSSIWSAYFPLMEFIGNTCIVALLSYGGYLVMQNQLNPGELVAFFSLVNYMMWPIMNLGFVINMFSQAKASGERLLDILEKEEDITDHPHALHKQKLTGDVHFKNVSLAYGKEQTNALCNVSFEANSGKVIGLLGPTGSGKSSVTQLLTRFYSPVGGMITIDHKPITDYSLKTLRSNIGVVLQESFLFSSTIRSNISYGRPDASMEDVIEAAKRAQAHNFIMELPDGYDTMLGERGMGLSGGQKQRIAIARAICLNPSILILDDATSAVDMQTEHSIQLALKEVMKNRTTFIVAHRISSLKHADEILVFNKGRIRERGTHHELLEKGGYYKKIYDLQ 571
BLAST of abc transporter vs. SwissProt
Match: gi|81815540|sp|O31708.1|YKNV_BACSU (RecName: Full=Uncharacterized ABC transporter ATP-binding protein YknV) HSP 1 Score: 320.857 bits (821), Expect = 8.277e-101 Identity = 198/581 (34.08%), Postives = 307/581 (52.84%), Query Frame = 0 Query: 1 MRYARGYRRRVI-LASASSIINKLFDIAPEILIGI-AIDVVVNQDTSFVASFGFETAHQQILALAVLTFFIWAGESLFQYFYLVL---WRN-LAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYAD--------ANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHY 567 + Y + YR+ ++ L+ + +I + ILIG+ +D + S L + FI +G + Y VL W N L Q + D+R + + H+QR S FF++RS G ++ + +D+N L+ G +L+ + + V + F LSP + + +P++ + + ++ + VR + L+S L +I GI ++FT E +E+ AY D + R A ++ F P++ M G G +N + +G + F P++ L Q + MAS+ RI LD +++++ A NG +SF +V F Y + S +P G+TLALVG TGSGK+T+ L+ RFY A G+IK+DG+ I DL L+ LR I V Q+ F+F G+I +NI +G P AS E + A+Q A EFI L +G T V ERG +LS GQRQ ++ ARALL DP +++LDEAT+++D ETE IQ++L+ L KGRT +MIAHRLST+ A+RI+V+ +G+ +E+GNHD LLA G Y Sbjct: 34 LSYVKPYRKTILPLSFLTVLIGTAVKLVIPILIGVYVLDQAITGRNS---------------ELLIQLIFIISGLYVLNYAANVLRIRWMNQLGQHVIYDLRQHLFTHVQRLSHRFFDQRSAGSILVRIMNDINSLQELFTSGVINLLTDLLLLAGVIIILFTLSPELTIAIMVTLPIMFFISTSLRKKIRRSWQTVRLKQSKLNSHLNESIQGIRVTQAFTQE--------EENMAYFDGVNQENYESWREATRKNAMFRPLVEMTNAIGTAVLIWYGATLIMNETITIGVFVSFAFYLGMFWEPISRLGQVYNQLLMGMASSERIFEFLDEQPNVKEKPNAIHNEKINGEISFEEVEFSYDEKRKALHAVSFSIPAGSTLALVGHTGSGKTTIANLISRFYDAAGGTIKIDGIPIKDLSLASLRSQISIVLQDTFIFSGTIMENIRFGRPNASDEEVMKASQAVGADEFISDLAEGYATEVEERGSVLSAGQRQLISFARALLADPAIIILDEATASIDTETEVKIQQALKTLLKGRTAVMIAHRLSTIRDADRIIVLDHGRKIEEGNHDQLLAKGGIY 591
BLAST of abc transporter vs. SwissProt
Match: gi|67468754|sp|Q6AJW3.1|MSBA_DESPS (RecName: Full=Lipid A export ATP-binding/permease protein MsbA) HSP 1 Score: 310.457 bits (794), Expect = 2.702e-97 Identity = 187/522 (35.82%), Postives = 281/522 (53.83%), Query Frame = 0 Query: 58 QILALAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVL--GGFKTLNGELGVGAYGVLVFLTQRLLW--PLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGI-EDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQ 574 QIL L ++ F G + Y Y ++ + Q + D RL + H+ RQS+ FF TG L++ + DV +++ + L++ F VI + V FY++ +AL+ F IP+ F + L +E +S+ L I G +K+F E E ER ++ + P+ M ++ GF ++ GG + +NG G + FLT + P+ ++Q ++ +AS +R+ +LD +I D+ AT + ++ F V F Y G I +++VP G LA+VG +G GK+TL L+ RF Q GSI +DG DI D+ + LR I V+Q+ LF +IR+NIAYG + E I AA+ A A FIE LP G TA+GE G LSGGQRQR+++ARALL D +L+LDEATSA+D E+E +Q++L L + RT +IAHRLST+ +A RIVVV GKIVE+G+H+ LL +G Y + +Q Sbjct: 59 QILPLIIIAIFFTKG--VLYYTYAIILERVGQSIIRDFRLKIFAHIHRQSLSFFHNTPTGTLISRVLSDVALMQQAVSTVIIQLLRDFFQVIFLLGVIFYMNWKLALICFLIIPLAAIPIVKFGKIFRKLSTKTQEETAEVSNMLHETISGSRIVKAFCREDYEVERFHRQVETLFTITMKNAKYRVFQSPL--MEIIGGFAVAGIIWVGGSEVINGSATPGTF--FAFLTAMITAYDPVKRVSQVNSTIQQGLASAQRVFAILDIKPEIEDKPEATSLAPFKESIEFHDVSFSY--GTEKILSHINLKVPAGEALAIVGPSGGGKTTLTNLIPRFIDLQEGSITIDGTDIRDVTTNSLRNQIAMVTQQTILFNDTIRNNIAYGKDSCTEEEIRRAAKAAHALTFIEELPNGFDTALGEGGAKLSGGQRQRISIARALLADAPILILDEATSALDTESEREVQKALENLMQNRTTFVIAHRLSTIKNASRIVVVKKGKIVEEGSHEELLKLEGEYQLLYNMQ 572
BLAST of abc transporter vs. SwissProt
Match: gi|221222997|sp|P71082.2|YGAD_BACSU (RecName: Full=Putative multidrug export ATP-binding/permease protein YgaD) HSP 1 Score: 308.531 bits (789), Expect = 2.227e-96 Identity = 182/583 (31.22%), Postives = 299/583 (51.29%), Query Frame = 0 Query: 1 MRYARGYRRRVILASASSIINKLFDIAPEILIGIAIDVVV-------NQDTSFVASFGFETAHQQILALAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGI-EDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQT 575 M++ + Y++++ + I+ +A +L+ +D ++ ++ TS I+A+ F I + Y W A + D+R ++H+Q+ S+ F+ TG++++ + +DV Q + F+ G ++ ++++ V ++ L + L++ P+ YF R L + + + + L I G+ I+SF E E + +++ + D R ++ V+ L G+ +NG L VG V R+ P+ L + +++AS R+ +D ++ D+ A +A G V F V F+Y I D S++V G T+ALVG +G GKSTL+ L+ RFY +G + +DG DI D LR +G V Q+ FLF +IR+NIA G P A+LE I AA+ A A EFI P+G T VGERG+ LSGGQ+QR+++AR LK+P +L+LDEATSA+D E+E IQ ++ +LAK RT ++AHRLST+ HA++IVV+ NG I+E G HD L+ + Y + +Q Sbjct: 8 MQFVKPYKKQIFVTVLIGIVKFSIPLALPLLLKYVVDDIIQGGGTASDKTTSLFT----------IMAIMFALFLILRPPVEYYRQYFAQWT--ASKVLYDIRAKLFDHIQKLSLRFYANTRTGEVISRVINDVEQTKDFVITGLMNIWLDMLTILIVISIMLTLDVKLTLISIVLFPLYGISVKYFYGRLRKLTRERSQALAQVQGHLHERIQGMPVIRSFAIEDHEQAQFNEKNGHFLDKAIRHTNWNAKTFAVVNTITDLAPLIVIACAGYFVINGPLTVGTMVAFVGYIDRMYNPVRRLINSSTTLTQSIASMDRVFEFIDEPYELTDKPNAIKADQIRGGVEFQNVSFQYEKDKENILHDVSLKVNRGETVALVGMSGGGKSTLVSLIPRFYDVTSGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIAIGKPDATLEEIIEAAKAANAHEFIMSFPEGYETRVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIEIGTHDELMDYESQYKHLFTIQN 578
BLAST of abc transporter vs. SwissProt
Match: gi|122064528|sp|Q2LVL0.1|MSBA_SYNAS (RecName: Full=Lipid A export ATP-binding/permease protein MsbA) HSP 1 Score: 301.597 bits (771), Expect = 1.666e-93 Identity = 171/517 (33.08%), Postives = 285/517 (55.13%), Query Frame = 0 Query: 60 LALAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLW--PLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQ 574 + LA++ ++ G YF +L + Q + AD+R YE +Q+QS+ FF + TG L++ + +DVN ++ + L++ ++I + V FY +A++A P+ I+ F ++ + + +G L++ LQ I G +++F E E +R +E+ +++++++ P + G GG++ + G G + FLT ++ P+ L + ++ +A +R+ ++D DI D A + + + F Y + + ++ + G +A VG +G GK+TL+ L+ RFY AG I +DG DI D+ L LR IG V+Q+ LF ++R+NIAYG S + I AA+ A A +FI LP+G T +GE G LSGG+RQR+++ARALLK+ +L+LDEATS++D E E +Q +L RL KGRT ++IAHRLST+ +A+RIVV+ G+IVE+G H+TLLA +G Y+ +Q Sbjct: 75 IPLAIILIYLVKGGC--SYFQAILMSFIGQRIVADLRNRLYEQIQKQSLSFFSKNPTGVLMSRITNDVNSIQGTVSDAVTSLMKDSFTLICLVFVIFYRDWQLAIIAMIVFPLTIYPIAKFGQKMRSVATRTQVTMGSLTTLLQETISGTRIVRAFCMEAHENQRFARENEKLMHLALKSVSINALSSPFMEFLGGIGIAAIIFYGGYQVIKGSSTPGTF--FSFLTALIMLYEPVKRLTNVNNTIQQGIAGAQRVFSIIDLVPDIVDRDEAVELPRISEKIEIRNISFAYDDTPV-LRNINLTIRAGEVVAFVGMSGGGKTTLVNLIPRFYDVTAGQILIDGHDIRDVSLISLRRQIGIVTQQTILFNDTVRNNIAYGSQGCSEKEIIEAARAANAHDFIVNLPEGYDTVIGELGTKLSGGERQRISIARALLKNAPILILDEATSSLDTEAEMEVQEALERLMKGRTTLVIAHRLSTIRNADRIVVLVKGEIVEEGAHETLLARRGEYYKLHQLQ 586
BLAST of abc transporter vs. SwissProt
Match: gi|81827826|sp|Q6G868.1|Y1788_STAAS (RecName: Full=Putative multidrug export ATP-binding/permease protein SAS1788 >gi|81827988|sp|Q6GFJ1.1|Y1956_STAAR RecName: Full=Putative multidrug export ATP-binding/permease protein SAR1956 >gi|81832388|sp|Q7A0J1.1|Y1806_STAAW RecName: Full=Putative multidrug export ATP-binding/permease protein MW1806 >gi|81832479|sp|Q7A4T3.1|Y1683_STAAN RecName: Full=Putative multidrug export ATP-binding/permease protein SA1683 >gi|81855910|sp|Q99T13.1|Y1866_STAAM RecName: Full=Putative multidrug export ATP-binding/permease protein SAV1866 >gi|81859551|sp|Q5HEQ8.1|Y1924_STAAC RecName: Full=Putative multidrug export ATP-binding/permease protein SACOL1924 >gi|121957842|sp|Q2FFM9.1|Y1847_STAA3 RecName: Full=Putative multidrug export ATP-binding/permease protein SAUSA300_1847 >gi|121957846|sp|Q2G2M9.1|Y2003_STAA8 RecName: Full=Putative multidrug export ATP-binding/permease protein SAOUHSC_02003) HSP 1 Score: 297.745 bits (761), Expect = 3.018e-92 Identity = 185/578 (32.01%), Postives = 292/578 (50.52%), Query Frame = 0 Query: 1 MRYARGYRRRVILASASSIINKLFDIAPEILIGIAIDVVVNQDTSFVASFGFETAHQQILAL--AVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGI-EDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQT 575 +++ + Y+ R+ II + +LI AID V+N A E H +A+ A+ F I F YL W + + D+R Y H+Q S F+ G +++ + +DV Q + F+ G ++ +++I ++ F+L + L A P I + F R L + + + + L + GI+ +KSF E EA+ +++ + + ++ I G + +G + ++G + VG V + L PL L + ++ AS R+ L+D DI++ A G + V F+Y A I +D ++ + G T+A VG +G GKSTLI L+ RFY +G I +DG +I D LR IG V Q+ LF ++++NI G P A+ E + AA+ A A +FI LPQG T VGERG+ LSGGQ+QRL++AR L +P +L+LDEATSA+D E+E+ IQ +L L+K RT +++AHRLST+ HA++IVV+ NG IVE G H L+A +G Y + +Q Sbjct: 6 LQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNH----ALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWT--SNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577
BLAST of abc transporter vs. SwissProt
Match: gi|7388395|sp|Q9WYC4.1|Y288_THEMA (RecName: Full=Uncharacterized ABC transporter ATP-binding protein TM_0288) HSP 1 Score: 297.745 bits (761), Expect = 4.597e-92 Identity = 182/577 (31.54%), Postives = 308/577 (53.38%), Query Frame = 0 Query: 3 YARGYRRRVILASASSIINKLFDIAPEILIGIAIDVVVNQDTSFVASFGFETAHQQILALAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAV-GAV--FFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQTG 576 Y R + +I+ ++ + + LIG IDVV FV F+ + +L L I+A SL + + L+QD+ +R +E +QR +GFF+ GD+++ + +DV+ + L N +IQ F ++ + GAV F ++ +++L+ S +P+ + + + + + +G L+ ++ +I G+ IK FT E E E+ + + + +A S P++ M GF GG+ L + VG + +++ PL L+ ++ + A+AS RI +LD + +D+ A + G + F V F Y ++D + + G +ALVG TGSGK+T++ LL+RFY G I +DG+DI + S LR +IG V Q+ LF ++++N+ YG+P A+ E I AA+ + FI+ LP+G T + + G LS GQRQ LA+ RA L +P++L+LDEATS VD +TE +IQ ++ +L +G+T I+IAHRL+T+ +A+ I+V+ +G+IVE G HD L+ +G Y+ + Q G Sbjct: 31 YLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVV------FVPR-RFDLLPRYMLILGT----IYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVL---GNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEE-KDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYG 592
BLAST of abc transporter vs. SwissProt
Match: gi|121957837|sp|Q2YU20.1|Y1799_STAAB (RecName: Full=Putative multidrug export ATP-binding/permease protein SAB1799c) HSP 1 Score: 296.975 bits (759), Expect = 5.354e-92 Identity = 185/578 (32.01%), Postives = 292/578 (50.52%), Query Frame = 0 Query: 1 MRYARGYRRRVILASASSIINKLFDIAPEILIGIAIDVVVNQDTSFVASFGFETAHQQILAL--AVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGI-EDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQT 575 +++ + Y+ R+ II + +LI AID V+N A E H +A+ A+ F I F YL W + + D+R Y H+Q S F+ G +++ + +DV Q + F+ G ++ +++I ++ F+L + L A P I + F R L + + + + L + GI+ +KSF E EA+ +++A + + ++ I G + +G + ++G + VG V + L PL L + ++ AS R+ L+D DI++ A G + V F+Y A I +D ++ + G T+A VG +G GKSTLI L+ RFY +G I +DG +I D LR IG V Q+ LF ++++NI G P A+ E + A+ A A +FI LPQG T VGERG+ LSGGQ+QRL++AR L +P +L+LDEATSA+D E+E+ IQ +L L+K RT +++AHRLST+ HA++IVV+ NG IVE G H L+A +G Y + +Q Sbjct: 6 LQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNH----ALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWT--SNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNANFLTRALKHTRWNAYSFATINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIYHVNFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEVAKVANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577
BLAST of abc transporter vs. SwissProt
Match: gi|122064527|sp|Q2NUA5.1|MSBA_SODGM (RecName: Full=Lipid A export ATP-binding/permease protein MsbA) HSP 1 Score: 295.434 bits (755), Expect = 2.122e-91 Identity = 191/533 (35.83%), Postives = 287/533 (53.85%), Query Frame = 0 Query: 51 GFETAHQQILA---LAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVL--GGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAG-GAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKA-SLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQTG 576 GF A+ IL L V+ + G S F Y V W ++ + +MR + HM + FF+++STG L++ + D Q+ G +I+ S+I + A+ FY S ++L+ PV+ + +R + ++ +G +++ + + G + F + +E ER S + +A SS P+I+ +A FVL F ++ L G V+ L+ PL SL F+R MA+ + + +LD + +DEGT G ++F V F Y + D S+ +P G T+ALVG +GSGKST+ LL RFY Q G I LDG D+ L+ LR + VSQ LF +I +NIAY S + I AA+ A A +FIE++ QGL T +GE G+LLSGGQRQR+A+ARALL+D +L+LDEATSA+D E+E AIQ++L L K RT ++IAHRLST+ A+ I+VV G+IVE+GNH+ L++ +G Y +Q G Sbjct: 55 GFGKANSNILVWMPLVVIGLMVLRGVSGFVSSYCVSW--VSGKVIMNMRRRLFNHMMDMPVSFFDQQSTGTLLSRITYDSEQVASSSSGALITVIREGASIIGLFAMMFYYSWQLSLILVVIAPVVSFAIRQVSKRFRQISKRMQNTMGQVTTSAEQMLKGHKEVLIFGGQKVENERFNSVSNRMRQQGMKMVAASSVSDPLIQF--IASLALAFVLYAASFPSVMETLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFSILDMETE-KDEGTV-EVERVKGDIAFDHVTFSYPGKETPSLHDISLSIPTGHTVALVGRSGSGKSTIANLLTRFYDIQQGQILLDGTDLRAYKLASLRNQVALVSQNVHLFNDTIANNIAYARKATYSRKQIENAARMAYAMDFIEKMDQGLDTVIGENGVLLSGGQRQRIAIARALLRDCPILILDEATSALDTESERAIQKALDALQKNRTSLVIAHRLSTIEKADEILVVVEGRIVERGNHEELMSRQGVYAQLHQLQFG 581
BLAST of abc transporter vs. nr
Match: gi|662121842|ref|WP_030073728.1| (ABC transporter ATP-binding protein [Halomonas alkaliantarctica]) HSP 1 Score: 813.913 bits (2101), Expect = 0.000e+0 Identity = 413/578 (71.45%), Postives = 467/578 (80.80%), Query Frame = 0 Query: 1 MRYARGYRRRVILASASSIINKLFDIAPEILIGIAIDVVVNQDTSFVASFGFETAHQQILALAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQTGGA 578 +RYARGYRRR+ A+A SIINKLFDIAPEILIG+AIDVVVNQ+ SFVA GFET HQQI LAVLTFFIWAGESLF+Y + +LWRNLAQ LQADMR + YEH QR M FFE +S+G LVA +NDDVNQLERFLDGGAN LIQV V+V+AVGAVFF LSPLIALLAF+PIP+IIWGAF+F R+A PLY+DVRE+VG L+SRL NN+ GIATIKSFTSE EAERLR S AY +ANRRAI VSSAFIPVIRMA+LAGFL TF +GG LNG L VGAYGVLVFLTQRLLWPLT LAQ IDLFERAMAST+RIL LL+ I ++DE T + G V F V F Y A G+ + VP G TLALVGATGSGKSTLIKLLLRFY +G + +DG I ++ + LR AIG VSQ+ +LFEGSIRDNIAYG P AS I AA+ AEAW FIE LPQGL T VGERG+LLSGGQRQRL+LARALLKDP +LVLDEATSAVDNETEAAIQRSL+R+A GRTVIMIAHRLST+VHA+ IVV+ G++ E+GNH +LLAA GHY +QW VQTG A Sbjct: 24 LRYARGYRRRIAAATACSIINKLFDIAPEILIGVAIDVVVNQENSFVARLGFETPHQQITILAVLTFFIWAGESLFEYLFQILWRNLAQRLQADMRQDTYEHAQRLDMAFFESKSSGQLVATMNDDVNQLERFLDGGANALIQVGVTVVAVGAVFFVLSPLIALLAFTPIPLIIWGAFFFQRKAGPLYSDVREKVGDLASRLSNNLSGIATIKSFTSETREAERLRDASEAYLEANRRAIKVSSAFIPVIRMAILAGFLATFTVGGMMALNGSLNVGAYGVLVFLTQRLLWPLTGLAQVIDLFERAMASTKRILDLLEVPITVKDESTTPLTAPVKGEVRFEAVSFHYAASQVGVSGVDLHVPAGNTLALVGATGSGKSTLIKLLLRFYDPASGRVLVDGQPITEVSMHSLRQAIGLVSQDVYLFEGSIRDNIAYGKPDASEAEIIDAAKTAEAWSFIETLPQGLETPVGERGVLLSGGQRQRLSLARALLKDPPILVLDEATSAVDNETEAAIQRSLKRIAHGRTVIMIAHRLSTIVHADEIVVIEKGQVAERGNHASLLAADGHYAAQWRVQTGAA 601
BLAST of abc transporter vs. nr
Match: gi|1132207167|ref|WP_075881523.1| (ABC transporter ATP-binding protein [Halomonas sp. Marseille-P2426]) HSP 1 Score: 812.372 bits (2097), Expect = 0.000e+0 Identity = 405/576 (70.31%), Postives = 465/576 (80.73%), Query Frame = 0 Query: 1 MRYARGYRRRVILASASSIINKLFDIAPEILIGIAIDVVVNQDTSFVASFGFETAHQQILALAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQTG 576 +RYA+GYRR++I A+ SIINKLFDIAPEILIG+AIDVVVNQ+ SFVA GFET +QI LAVLTFFIWAGESLF+Y + VLWRNLAQ LQA+MR +AYEH QR M FFE +S+G LVA +NDDVNQLERFLDGGAN LIQV V+V+AVGAVFF LSPLIALLAF+PIP+IIWGAF+F R+A PLY DVRE+VG LSSRL NN+ GIATIKSFTSE EAERLR S AY +ANRRAI VSSAFIPVIRMA+LAGFL TF +GG LNG L VGAYGVLVFLTQRLLWPLT LAQ IDLFERAMASTRRIL LL+ I +++ A+ G V+F V F Y + G++ ++ VP G TLALVGATGSGKSTL+KLLLRFY ++G + +DG IN + L LR AIG VSQ+ +LFEGSIRDNIAYG P A AI AA+ AEAW FI+ LPQGL T VGERG+ LSGGQRQRL+LARALLKDP +LVLDEATSAVDNETEAAIQRSL+R+A GRTV+MIAHRLST+VHA+ IVV+ G++ E+G HD LL A GHY +QW VQTG Sbjct: 16 LRYAKGYRRQIITATLCSIINKLFDIAPEILIGVAIDVVVNQEQSFVACLGFETPQEQISILAVLTFFIWAGESLFEYLFQVLWRNLAQRLQANMRQDAYEHAQRLDMAFFEAKSSGQLVATMNDDVNQLERFLDGGANALIQVGVTVLAVGAVFFVLSPLIALLAFTPIPLIIWGAFFFQRKAGPLYNDVREKVGDLSSRLSNNLSGIATIKSFTSEAREAERLRDASEAYVEANRRAIKVSSAFIPVIRMAILAGFLATFTVGGMMALNGNLNVGAYGVLVFLTQRLLWPLTGLAQVIDLFERAMASTRRILDLLEEPIKVKETSDQPLATPVRGEVTFDAVSFHYASSEVGVDGINLHVPAGNTLALVGATGSGKSTLVKLLLRFYDPESGRVLIDGQPINAVSLQSLRQAIGLVSQDVYLFEGSIRDNIAYGKPDADDAAIIDAAKTAEAWSFIDTLPQGLDTPVGERGVRLSGGQRQRLSLARALLKDPPILVLDEATSAVDNETEAAIQRSLKRIAHGRTVLMIAHRLSTIVHADEIVVIEKGQVTERGTHDDLLDANGHYAAQWRVQTG 591
BLAST of abc transporter vs. nr
Match: gi|1140871713|ref|WP_076725360.1| (ABC transporter ATP-binding protein [Marinobacter lutaoensis] >gi|1139442300|gb|ONF42893.1| ABC transporter [Marinobacter lutaoensis]) HSP 1 Score: 811.216 bits (2094), Expect = 0.000e+0 Identity = 402/578 (69.55%), Postives = 465/578 (80.45%), Query Frame = 0 Query: 1 MRYARGYRRRVILASASSIINKLFDIAPEILIGIAIDVVVNQDTSFVASFGFETAHQQILALAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQTGGA 578 +RYARGYRR++I A+ SIINKLFDIAPEILIGIAIDVVVN++ SFVA GFETA QQI LAVLTF +WAGESLF+Y + +LWRNLAQ LQ+D+R +AYEH QR M FFE RS+G LVA +NDDVNQLERFLDGGAN +IQV V+V+AVGAVFF LSPL+ALLAF+PIP+IIWGAFYF R+A PLYADVRE+VG L+SRL NN+ GIATIKSFT+E EA RLR+ S AY DANR+AI +SSAFIPVIRMA+LAGFL TF +GG LNG L VGAYGVLVFLTQRLLWPLT+LA+ ID FERAMASTRRIL LL + + D+G A G V F V FRY G GI+D S+ VP G TLALVGATGSGKSTLIKLLLRFY +G I++DG I +L LS LR AIG VSQ+ +LF+G+IR+N+AYG P A+ E I AA+ AEAW FIE LP+GL T VGERG LSGGQRQRL+LARALLK+P +LVLDEATSAVDNETEAAIQRSLRR+ RTVIMIAHRLST+V A+ I V+ +G++VEQG H LLA +G Y +QW VQTG A Sbjct: 19 LRYARGYRRQIIAATTCSIINKLFDIAPEILIGIAIDVVVNKEASFVAGLGFETAQQQITILAVLTFVVWAGESLFEYLFQILWRNLAQRLQSDLRQDAYEHAQRLDMSFFESRSSGQLVATMNDDVNQLERFLDGGANAMIQVLVTVVAVGAVFFILSPLVALLAFTPIPLIIWGAFYFQRKAGPLYADVREKVGDLASRLANNLAGIATIKSFTAEQREAARLRESSEAYVDANRKAIRISSAFIPVIRMAILAGFLATFTVGGMMALNGTLNVGAYGVLVFLTQRLLWPLTALAEVIDQFERAMASTRRILNLLAEPVRVHDQGGKALAQPVRGEVEFRHVTFRYPGSGGGIQDISLSVPAGHTLALVGATGSGKSTLIKLLLRFYDPVSGEIRIDGQPIRELSLSSLRQAIGLVSQDVYLFDGTIRENLAYGKPDATDEEIIEAARTAEAWSFIETLPEGLDTPVGERGARLSGGQRQRLSLARALLKNPPILVLDEATSAVDNETEAAIQRSLRRIGHNRTVIMIAHRLSTIVDADTIAVIEHGQVVEQGTHAELLARQGAYSAQWRVQTGQA 596
BLAST of abc transporter vs. nr
Match: gi|1221548416|ref|WP_089684764.1| (ABC transporter ATP-binding protein [Halomonas gudaonensis] >gi|1086606275|emb|SDJ47180.1| ATP-binding cassette, subfamily B [Halomonas gudaonensis]) HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0 Identity = 414/576 (71.88%), Postives = 474/576 (82.29%), Query Frame = 0 Query: 1 MRYARGYRRRVILASASSIINKLFDIAPEILIGIAIDVVVNQDTSFVASFGFETAHQQILALAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQTG 576 +RYARGYRRR++ ASA SI+NKLFDIAPEILIG+AIDVVVNQ+ SFVA GFETA QQIL LAVLTFFIWAGESLF+Y Y VLWRNLAQ LQAD+R ++YEH QR M +FE RS+G LVA +NDDVNQLERFLDGGAN +IQV V+V+AVGAVFF +SPLIALLAF+PIP+IIWGAF+F R+A PLYADVRE+VG L+SRL NN+ GIATIKSFTSE EAERLR+ S AY +ANRRAI VSSAFIPVIRMA+LAGFL TF +GG L G+L VGAYGVLVFLTQRLLWPLT LA+ IDLFERAMASTRRIL LL I +RD A+ G VSF +V FRY + G G+E S+ VP G TLALVGATGSGKSTL+KLLLRFY +G I +DG I+ + L+ LRGAIG VSQ+ +LFEGS+RDNIAYG P+AS + AA+ AEAWEFI+ LPQGL TAVGERG+ LSGGQRQRL+LARALLKDP +LVLDEATSAVDNETEAAIQRSL R+ GRTVIMIAHRLST+VHA+ IVV+ G++ E G HD+LLAA G Y +QW VQTG Sbjct: 15 LRYARGYRRRIVAASACSIVNKLFDIAPEILIGVAIDVVVNQERSFVARVGFETAQQQILVLAVLTFFIWAGESLFEYLYQVLWRNLAQRLQADLRQDSYEHAQRLDMAYFESRSSGQLVATMNDDVNQLERFLDGGANAMIQVGVTVVAVGAVFFVISPLIALLAFTPIPLIIWGAFFFQRKAGPLYADVREKVGDLASRLGNNLAGIATIKSFTSEAREAERLREVSEAYVEANRRAIQVSSAFIPVIRMAILAGFLATFTVGGMLALRGDLNVGAYGVLVFLTQRLLWPLTGLAEVIDLFERAMASTRRILDLLAVPITVRDNHGASLPEPVRGEVSFERVSFRYGSSGEGVEGVSLHVPAGNTLALVGATGSGKSTLVKLLLRFYDPDSGRICIDGQPIDGVSLASLRGAIGLVSQDVYLFEGSVRDNIAYGRPQASEAEVIEAARTAEAWEFIQALPQGLDTAVGERGVRLSGGQRQRLSLARALLKDPPILVLDEATSAVDNETEAAIQRSLARIGHGRTVIMIAHRLSTIVHADEIVVIEGGRVAEHGTHDSLLAADGRYAAQWRVQTG 590
BLAST of abc transporter vs. nr
Match: gi|1054550147|ref|WP_066319603.1| (ABC transporter ATP-binding protein [Halomonas sp. G11] >gi|1036588399|gb|OAZ97051.1| ABC transporter [Halomonas sp. G11]) HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0 Identity = 408/578 (70.59%), Postives = 468/578 (80.97%), Query Frame = 0 Query: 1 MRYARGYRRRVILASASSIINKLFDIAPEILIGIAIDVVVNQDTSFVASFGFETAHQQILALAVLTFFIWAGESLFQYFYLVLWRNLAQDLQADMRLNAYEHMQRQSMGFFEERSTGDLVAVLNDDVNQLERFLDGGANDLIQVFVSVIAVGAVFFYLSPLIALLAFSPIPVIIWGAFYFLRRASPLYADVRERVGLLSSRLQNNIGGIATIKSFTSEGIEAERLRQESAAYADANRRAIAVSSAFIPVIRMAVLAGFLCTFVLGGFKTLNGELGVGAYGVLVFLTQRLLWPLTSLAQTIDLFERAMASTRRILGLLDTTIDIRDEGTATRASDANGTVSFAQVGFRYRAGGAGIEDFSVEVPGGTTLALVGATGSGKSTLIKLLLRFYSAQAGSIKLDGVDINDLPLSELRGAIGFVSQEPFLFEGSIRDNIAYGDPKASLEAITLAAQQAEAWEFIERLPQGLHTAVGERGILLSGGQRQRLALARALLKDPQVLVLDEATSAVDNETEAAIQRSLRRLAKGRTVIMIAHRLSTVVHAERIVVVANGKIVEQGNHDTLLAAKGHYHSQWMVQTGGA 578 +RYA+GYRRR+I A+ SI+NKLFDIAPEILIG+AIDVVVNQ+ SFVA GFET +QI LAVLTFFIWAGESLF+Y + VLWRNLAQ LQADMR + YEH QR M FFE +S+G LVA +NDDVNQLERFLDGGAN LIQV V+V+AVGAVFF LSPLIALLAF+PIP+IIWGAFYF R+A PLY+DVRE+VG L+SRL NN+ GIATIKSFTSE EAERLR S AY DANRRAI VSSAFIPVIRMA+LAGFL TF +GG LNG+L VGAYGVLVFLTQRLLWPLT LAQ IDLFERAMAST+RIL LL+ I ++D+ T A G V F V F Y++ G++ + P G TLALVGATGSGKSTL+KLLLRFY ++G + +DG + D+ + LR AIG VSQ+ +LFEGSIRDNIAYG P A EAI AA+ AEAW FIE LPQGL T VGERG+ LSGGQRQRL+LARALLKDP +LVLDEATSAVDNETEAAIQRSL+R+A GRTVIMIAHRLST+VHA+ IVV+ G++ E+G H +LLAA GHY +QW VQTG A Sbjct: 27 LRYAKGYRRRIIAATVCSIVNKLFDIAPEILIGVAIDVVVNQEQSFVARLGFETPQEQITILAVLTFFIWAGESLFEYLFQVLWRNLAQRLQADMRQDTYEHAQRLDMAFFESKSSGQLVATMNDDVNQLERFLDGGANALIQVGVTVVAVGAVFFVLSPLIALLAFTPIPLIIWGAFYFQRKAGPLYSDVREKVGDLASRLSNNLSGIATIKSFTSEAREAERLRAASEAYVDANRRAIQVSSAFIPVIRMAILAGFLATFTVGGMMALNGDLNVGAYGVLVFLTQRLLWPLTGLAQVIDLFERAMASTKRILDLLEEPITVKDDSTTPLAQPVQGEVRFESVCFHYKSSDVGVDGIDLHAPAGHTLALVGATGSGKSTLVKLLLRFYDPESGRVLIDGQPVMDVSMHSLRQAIGLVSQDVYLFEGSIRDNIAYGKPDADEEAIIDAAKTAEAWSFIETLPQGLDTPVGERGVRLSGGQRQRLSLARALLKDPPILVLDEATSAVDNETEAAIQRSLKRIAHGRTVIMIAHRLSTIVHADEIVVIEKGRVAERGTHKSLLAANGHYAAQWRVQTGEA 604 The following BLAST results are available for this feature:
BLAST of abc transporter vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 22
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BLAST of abc transporter vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of abc transporter vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold2803_size12270:6100..7836- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold2803_size12270-processed-gene-0.3 ID=snap_masked-scaffold2803_size12270-processed-gene-0.3|Name=abc transporter|organism=Tigriopus kingsejongensis|type=gene|length=1737bp|location=Sequence derived from alignment at scaffold2803_size12270:6100..7836- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'abc transporter' has the following synonyms
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