thyroid hormone receptor alpha 1, snap_masked-scaffold28_size608977-processed-gene-1.5 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5") HSP 1 Score: 71.2478 bits (173), Expect = 1.063e-13 Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 36 SVSSTSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER 124 +S + C +CGD A +YG C GC+ FF+R V++++ + C E N +C+IDK R RCQ CR+ KCL +GMK V + R Sbjct: 83 PLSGSKHFCSICGDRAS-GKHYGVYSCEGCKGFFKRTVRKEL--TYACRE-NRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHR 167
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18") HSP 1 Score: 70.4774 bits (171), Expect = 2.217e-13 Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 0 Query: 27 SHLDSDGSSSVSSTSKICLVCGD-VAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMD 162 +HL++ G S + C VCGD ++G H YG C C+ FF+R VQ ++ C+ S C + +TR++C CRF KCL GMK+ + D R R +S + S NLP NS I + R D Sbjct: 138 THLNTSGISRQQLINSPCPVCGDKISGFH--YGIFSCESCKGFFKRTVQNK--KNYVCLRG-SQCPVTISTRKKCPACRFDKCLNIGMKLEAIRED--RTRGGRSTYQCSYNLPTTGVCSTNSTTIPTIKRESRGDD 267
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0") HSP 1 Score: 70.4774 bits (171), Expect = 2.409e-13 Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 0 Query: 20 QITQGSRSHLDSDGSSSVSSTSKICLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSD 121 Q +Q + GSSS + ++CLVCGD A G H Y C GC+ FFRR + ++ S + N +C ID RR+CQ CR +KC +GM+ V+ + Sbjct: 150 QYSQMVENERKKKGSSSRPA-EELCLVCGDRASGYH--YNALACEGCKGFFRRSITKN---SNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPE 246
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4") HSP 1 Score: 65.855 bits (159), Expect = 8.993e-13 Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 0 Query: 18 QNQITQGSRSHLDSDGSSSVSSTSKICLVCGD-VAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGM 113 ++++ + R +LDS+ ++IC VC + AG H +G C GC++FF R + S+ + N +C+IDK R C+ CR RKCL GM Sbjct: 12 KSRMEEDKRLYLDSNSKEEDPMRNQICRVCDEPAAGYH--FGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGM 106
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000009941 (supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-1 gene:EMLSAG00000009941 transcript:EMLSAT00000009941 description:"maker-LSalAtl2s649-snap-gene-4.11") HSP 1 Score: 67.781 bits (164), Expect = 1.350e-12 Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 0 Query: 21 ITQGSRSHLDSDGSSSVSSTSKI-CLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDI-YQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQSHVKSSPNLPRVPDLILNSDD---TTYISDQMRMM 161 I+ G + ++ S +S +S I C+VCGD + +YG C GC++FF+R V+R++ YQ G + NC +D+ R +CQ CR +KC GM+ R+ + V +P V L +SD TTY+S + M+ Sbjct: 59 ISSGIVASIEHAKPSELSESSDINCVVCGDKSS-GKHYGQFTCEGCKSFFKRSVRRNLTYQCRG----SKNCPVDQHHRNQCQHCRLKKCFKMGMR---------REAVQRGRVPPTPQ--GVFGLGFSSDPLSGTTYLSSYISML 188
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13") HSP 1 Score: 66.2402 bits (160), Expect = 5.450e-12 Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRD-IYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER 124 C VCGD A G H YG C GC+ FFRR V+++ +Y GC + N C+++K R C+ CR + C+ +GMK + V ++ +R Sbjct: 151 CAVCGDRATGKH--YGAASCDGCKGFFRRSVRKERVY---GCRQ-NRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDR 227
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000012486 (supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1 gene:EMLSAG00000012486 transcript:EMLSAT00000012486 description:"maker-LSalAtl2s91-snap-gene-4.8") HSP 1 Score: 66.2402 bits (160), Expect = 6.659e-12 Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0 Query: 44 CLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDI-YQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKI 115 C+VCGD A +YG C GC+ FF+R +++ + YQ G N +C + K R RCQ CR +KCL GM+I Sbjct: 220 CVVCGDRAS-GRHYGAISCEGCKGFFKRSIRKQLGYQCRG----NKDCEVTKHHRNRCQYCRLQKCLAMGMRI 287
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000009940 (supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-1 gene:EMLSAG00000009940 transcript:EMLSAT00000009940 description:"maker-LSalAtl2s649-augustus-gene-4.7") HSP 1 Score: 60.8474 bits (146), Expect = 4.019e-10 Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 0 Query: 44 CLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDI-YQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMK 114 C+VCGD + +YG C GC++FF+R V+R + YQ G + +C ID+ R +CQ CR +KC+ GM+ Sbjct: 434 CVVCGDKSS-GKHYGQFTCEGCKSFFKRSVRRALTYQCRG----SRSCPIDQHHRNQCQHCRLKKCIKMGMR 500
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000000733 (supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 gene:EMLSAG00000000733 transcript:EMLSAT00000000733 description:"maker-LSalAtl2s1117-snap-gene-1.23") HSP 1 Score: 60.4622 bits (145), Expect = 5.028e-10 Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 0 Query: 44 CLVCGD-VAGLHNYYGGQVCSGCRAFFRRCVQRDI-YQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGM 113 C VCGD +G+H YG C GC+ FFRR + YQ NC++D+ R RCQ CR +KCL GM Sbjct: 47 CKVCGDKSSGVH--YGVITCEGCKGFFRRSQSSVVNYQ----CPRQKNCIVDRVNRNRCQFCRLQKCLALGM 112
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Match: EMLSAG00000005619 (supercontig:LSalAtl2s:LSalAtl2s301:354064:356113:1 gene:EMLSAG00000005619 transcript:EMLSAT00000005619 description:"maker-LSalAtl2s301-augustus-gene-3.7") HSP 1 Score: 59.6918 bits (143), Expect = 5.791e-10 Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0 Query: 41 SKICLVCGD-VAGLHNYYGGQVCSGCRAFF-RRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGM 113 +++C VC + AG H +G C GC++FF R C + + Q + N C++DK R C+ CR RKC++ GM Sbjct: 54 NQLCRVCEEPAAGFH--FGAFTCEGCKSFFGRTCNNQSVIQE---CKNNYRCVVDKKNRTACKACRLRKCIMVGM 123
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|6094469|sp|Q98867.1|THAA_DANRE (RecName: Full=Thyroid hormone receptor alpha-A; Short=zTRalpha-A; AltName: Full=Nuclear receptor subfamily 1 group A member 1-A; AltName: Full=Thyroid hormone receptor alpha-1; Short=TRalpha-1) HSP 1 Score: 87.4261 bits (215), Expect = 1.462e-17 Identity = 64/215 (29.77%), Postives = 102/215 (47.44%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC---RQK----PDFIRQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ S C + +S C+IDK TR +CQ CRFRKC+ GM + VL D +R KRR + + + N + T ++ M H+ +A +QK P+ I Q + D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 57 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSC-KYDSCCIIDKITRNQCQLCRFRKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKKEEIVKTLHNRPEPTVSEWELIRMVTEAHRHTNAQGPHWKQKRKFLPEDIGQSPAPTSDNDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 268
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|135705|sp|P10827.1|THA_HUMAN (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1; AltName: Full=V-erbA-related protein 7; Short=EAR-7; AltName: Full=c-erbA-1; AltName: Full=c-erbA-alpha) HSP 1 Score: 87.8113 bits (216), Expect = 1.467e-17 Identity = 67/226 (29.65%), Postives = 111/226 (49.12%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER------------KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC-----RQK--PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + +S C+IDK TR +CQ CRF+KC+ GM + VL D +R +RR + ++S L + P+ D +I+ + H+S +A R+K PD I Q ++S G+ D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSC-KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRS---LQQRPEPTPEEWDLIHIATEA-------HRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 265
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|13124576|sp|O97716.1|THA_PIG (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1; AltName: Full=c-erbA-1; AltName: Full=c-erbA-alpha) HSP 1 Score: 87.8113 bits (216), Expect = 1.980e-17 Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER------------KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC-----RQK--PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + +S C+IDK TR +CQ CRF+KC+ GM + VL D +R +RR + ++S L + P+ D +++ + H+S +A R+K PD I Q ++S G+ D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSC-KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRS---LQQRPEPTPEEWDLIHVATEA-------HRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 265
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|52001262|sp|P63059.1|THA_RAT (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1; AltName: Full=c-erbA-1; AltName: Full=c-erbA-alpha) HSP 1 Score: 87.4261 bits (215), Expect = 2.226e-17 Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER------------KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC-----RQK--PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + +S C+IDK TR +CQ CRF+KC+ GM + VL D +R +RR + ++S L + P+ D +++ + H+S +A R+K PD I Q ++S G+ D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSC-KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRS---LQQRPEPTPEEWDLIHVATEA-------HRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 265
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|284018143|sp|P63058.2|THA_MOUSE (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1; AltName: Full=c-erbA-1; AltName: Full=c-erbA-alpha) HSP 1 Score: 87.4261 bits (215), Expect = 2.226e-17 Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER------------KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC-----RQK--PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + +S C+IDK TR +CQ CRF+KC+ GM + VL D +R +RR + ++S L + P+ D +++ + H+S +A R+K PD I Q ++S G+ D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSC-KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRS---LQQRPEPTPEEWDLIHVATEA-------HRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 265
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|2500920|sp|Q28570.1|THA_SHEEP (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1) HSP 1 Score: 87.0409 bits (214), Expect = 2.327e-17 Identity = 78/274 (28.47%), Postives = 132/274 (48.18%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER------------KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC-----RQK--PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQDCQELFSVNSQIMIALKHAVSL-QETDWCFVK----IIERALKSGQFPMLN----ELGHELAAHGLSE 284 C+VCGD A G H Y C GC+ FFRR +Q++++ + C + +S C+IDK TR +CQ CRF+KC+ GM + VL D +R +RR + ++S L + P+ D +++ + H+S +A R+K PD I Q ++S G+ D + + EF + + +V+ + F +LP +D L +++L+ AV E+D + + LK+G +++ ELG L+A L + Sbjct: 53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSC-KYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRS---LQQRPEPTPEEWDLIHVATEA-------HRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDD 313
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A) HSP 1 Score: 84.3445 bits (207), Expect = 1.382e-16 Identity = 64/233 (27.47%), Postives = 111/233 (47.64%), Query Frame = 0 Query: 27 SHLDSDGSSSVSSTSKICLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC---RQK----PDFIRQMAVL-SYYGGNSDYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 S+LD D ++C+VCGD A G H Y C GC+ FFRR +Q++++ S C + C+IDK TR +CQ CRF+KC+ GM VL D++R KR+ + + ++ + T ++ + H + +A +QK P+ I Q ++ + GG D + + +F + + +V+ + F +LP +D C E+ S+ + + Sbjct: 11 SYLDKD---------ELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSC-KYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSLVQKPEPTQEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAV 231
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 83.1889 bits (204), Expect = 2.645e-16 Identity = 64/233 (27.47%), Postives = 110/233 (47.21%), Query Frame = 0 Query: 27 SHLDSDGSSSVSSTSKICLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVC---RQK----PDFIRQMAVL-SYYGGNSDYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 S+LD D ++C+VCGD A G H Y C GC+ FFRR +Q++++ S C + C+IDK TR +CQ CRF+KC+ GM VL D +R KR+ + + ++ + T ++ + H + +A +QK P+ I Q ++ + GG D + + +F + + +V+ + F +LP +D C E+ S+ + + Sbjct: 11 SYLDKD---------ELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSC-KYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENREKRRKDELQKTLVQKPEPTPEEWELIQVVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAV 231
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|6094471|sp|Q91242.1|THAB_PAROL (RecName: Full=Thyroid hormone receptor alpha-B; Short=THR-alpha-B; AltName: Full=Nuclear receptor subfamily 1 group A member 1-B) HSP 1 Score: 83.5741 bits (205), Expect = 2.864e-16 Identity = 66/217 (30.41%), Postives = 105/217 (48.39%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER--KRRYQSHVKSSPNLPRVPDLILNSDDTTYIS-DQMRMM-DFHFH-QSMDAVCRQK----PDFIRQMAVLSYYGGNS-DYQFYQEFNILCNDFVFQVLSSIQEF----RDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ S C + + C+IDK TR +CQ CRF+KC+ GM + VL D +R KRR + + + N + T + +RM+ + H H + A +QK PD I Q V G+ D + + EF + + +V+ ++ LP +D C E+ S+ + + Sbjct: 33 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSC-KYDCCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLIEENRERRKKEEIVKTLQNRPEPTGAEWELIRMVTEAHRHTNAQGAQWKQKRKFLPDKIGQSPVAPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSEQLPCEDQIILLKGCCMEIMSLRAAM 246
BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Match: gi|6094470|sp|Q91241.1|THAA_PAROL (RecName: Full=Thyroid hormone receptor alpha-A; Short=THR-alpha-A; AltName: Full=Nuclear receptor subfamily 1 group A member 1-A) HSP 1 Score: 83.1889 bits (204), Expect = 3.580e-16 Identity = 63/216 (29.17%), Postives = 103/216 (47.69%), Query Frame = 0 Query: 44 CLVCGDVA-GLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER---KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRM-MDFHFHQSMDAVC-RQKPDFI-----RQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVL---SSIQEFRDLPWQD--------CQELFSVNSQI 237 C+VCGD A G H Y C GC+ FFRR +Q++++ S C + C+IDK TR +CQ CRF+KC+ GM + VL D +R +R + + + V L + + T + +RM D H H + +QK F+ + V + G D + + EF + + +V+ + F +LP +D C E+ S+ + + Sbjct: 59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSC-KYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKREEMVRTLQIRPEPDTAEWELIRMATDAHRHTNAQGSSWKQKRKFLSDDIGQSPMVPTSDGDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAV 271
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|657600342|gb|AID52832.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 511.916 bits (1317), Expect = 9.745e-178 Identity = 258/415 (62.17%), Postives = 318/415 (76.63%), Query Frame = 0 Query: 3 GQERNF--MQELEHFLDQNQITQGSRSHLDSDGSSSVSSTS---KICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQ-----SHVKS-----SPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVCRQKPDFIRQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVLSSIQEFRDLPWQDCQELFSVNSQIMIALKHAVSLQETDWCFVKIIERALKSGQFPMLNELGHELAAHGLSEKKPQLTYNQVFSSPWAANGQDEDRHLFLTQKMQGWPRKKDTDRVDDVQMNLLKLIILFSTEFVTLERGDIVEHVQMRFIRLLQKYLKFKYGSEAGVKLGNGLLILSYAKEVIDIQQRQ 402 QE F +QE+ F+D + Q +R+HLDS+GSSS SS +IC VCGD AG HNYYGGQ CSGCRAFFRR VQRD+ +L CV+ ++ C+++K+TRRRCQ CRF +CL GM+ WVLSDHER+RRY+ SH S SP R+ L+L ++D T+I+ M+MMD HF ++MD VC QK DFIR+MAV+SY+GG SD++FY+EF LC++FVFQV+SS+ EFR LP QD QEL VN Q M+ALK+AVSL ETDWCFV +ERALKSG+FP LN+ EL A G+SE KP+L Y+QVFSSPWAA+ DE+RHLFL KMQ WPRK DRVDDVQMNLLKLIILFS+EFV L+R DIVE QM+FI LLQKY+KF+YG EAGV+LGNGL++LSYAKE IDIQ+R+ Sbjct: 2 AQESTFDLIQEIADFIDNYEF-QSTRTHLDSEGSSSTSSDPDLRRICQVCGDEAGQHNYYGGQSCSGCRAFFRRIVQRDLQANLICVDNSNECVVNKSTRRRCQFCRFHRCLAIGMRPGWVLSDHERERRYRKTANGSHAVSIATQKSPVSNRISLLVLTTNDNTHITAHMKMMDAHFVRNMDVVCAQKQDFIRKMAVMSYFGGQSDFEFYEEFYSLCDNFVFQVMSSVLEFRSLPVQDQQELVRVNGQYMVALKYAVSLHETDWCFVYFLERALKSGKFPYLNDFAQELDAFGMSEHKPRLMYSQVFSSPWAASAADEERHLFLVNKMQSWPRKDAQDRVDDVQMNLLKLIILFSSEFVNLQRPDIVEQTQMKFIGLLQKYMKFRYGPEAGVRLGNGLMLLSYAKEAIDIQKRR 415
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|657600344|gb|AID52833.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 290.812 bits (743), Expect = 3.437e-89 Identity = 157/416 (37.74%), Postives = 238/416 (57.21%), Query Frame = 0 Query: 7 NFMQELEHFLDQNQITQGSRSHLDSDGSSSVSST------SKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQSHVKSS-----------------PNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVCRQKPDFIRQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVLSSIQEFRDLPWQDCQELFSVNSQIMIALKHAVSLQETDWCFVKIIERALKSGQFPMLNELGHELAAHGLSEKKPQLTYNQVFSSPWAANGQDEDRHLFLTQKMQGWPRKKDTDRVDDVQMNLLKLIILFSTEFVTLERGDIVEHVQMRFIRLLQKYLKFKYGSEAGVK-LGNGLLILSYAKEVIDI 398 NF EL L N Q S LDS+ + S+ + C +C + AG HNYYGG+ C CRAFFRR VQ Y+ C + C I+ TRR CQ CRF+KCL SGM++ WVL D ER RR+ KS+ P P +L + M++ D +S+ +P+F++++A SY+GG D F Q+F ++C+ F VL++ +EF+ L + D ++L VN ++ K +V++QET+ C V IE+A KSG+FP LN++ +LA ++++KP L YNQ ++SPWA++ + E R+ L KM+ WPR VD++QM L K+II FS +F+ LE+ +VE +QM+++ +L +YL F+YG++A K L GL++ +YA+E I Sbjct: 151 NFPSEL--ILQVNPEPQKSPGALDSEENLPKSTMPPSNWDNTKCYICQEKAGKHNYYGGKACPSCRAFFRRAVQSKYYEIFFCNKG-EKCEINLKTRRSCQFCRFKKCLASGMRVAWVLPDGERNRRFNKLHKSAKKNNSQIEGDLKVVAKKPKGPLEIQGVLPGEIDMIRGVHMKV-DSLGAKSLREFILAQPEFMKKLANFSYFGGQPDMDFIQKFQLMCDRFAHFVLTTSEEFKMLSFGDRRQLIEVNGPLLNRFKCSVTIQETNSCLVNGIEQATKSGEFPYLNDIVEKLAQLNMTDRKPILAYNQFYASPWASSKEAEGRYFNLMIKMKAWPRDNIASPVDEIQMTLAKMIIAFSPDFLNLEQRSVVEAIQMKYVSMLHRYLVFRYGAKAATKRLAAGLMMSTYAREAQSI 562
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|657600348|gb|AID52835.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 125.176 bits (313), Expect = 9.182e-28 Identity = 106/410 (25.85%), Postives = 193/410 (47.07%), Query Frame = 0 Query: 22 TQGSRSHLDSDGSSSVSSTSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVCRQKPDF-IRQMAVLSYYGGNSDYQFYQEFNILCNDFVF--------------QVLSSIQEF---RDLPWQDCQELFSVNSQIMIALKHAV------SLQETDWCFVKIIERALKSGQ--FPMLNELGH------ELAAH---GLSEKKPQLTYNQVFSSPWAANGQDEDRHLFLTQKMQGWPRKKDTDRVDDVQMNLLKLIILFSTEFVTLERGDIVEHVQMRFIRLLQKYLKFKYGSEAGVKLGNGLLILSYAKEVI 396 T+ S D+ + ++S + C VC + +G H+YYG QVC CRAFFRR + C ++ + C I+ + + C+ CR++KCL +GMK TWVL+D ER +R + + L ++ + + + T+I +Q + H + + + DF ++ V++ + ++ F + + L + F +V+ SI + +D+ D L S N + ++ + AV +++ F K I R LKS +P N + H +L+ H +K L +Q R L +Q WP+ DD+ + L+ +I++FS++ + L+ +V +Q ++ +L +Y+ FK +A VKLG G+ I+S +EV+ Sbjct: 86 TEDSSDFSDTPRTPNLSKPHRECPVCDNPSGKHSYYGAQVCFSCRAFFRRSTINSTFTEFQCKDSKT-CGINSKSWKSCKFCRYQKCLSAGMKSTWVLNDEERVQRNANRKR----LRKIREAGVAFSE-TFIGNQWTTDEEH------QIRQARNDFLLKGFGVIAQFCSSNPNIFDRYVDCLNGNTPFDPMLVGYTRRFIYSEVMKSISDLLIMKDIHPVDRFLLLSHNYPLWVSFEEAVQFRNHQEMEKIQQTFSKCI-RTLKSSSDLWPNAN-IDHLQRTFDKLSVHDNANFLDKLNNLITDQSM----------RRRRTQLITSIQSWPKISSRGLADDILLTLMTMILIFSSDSLKLQSEGVVSKIQNQYCYMLYRYVNFKSPGKAHVKLGEGMEIVSKVREVM 471
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|657600350|gb|AID52836.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 122.479 bits (306), Expect = 8.290e-27 Identity = 101/381 (26.51%), Postives = 168/381 (44.09%), Query Frame = 0 Query: 32 DGSSSVSSTSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHER-----KRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVCRQKPDFIRQMAVLSYYGGNSDYQFYQEFNILCNDFVFQVLSSIQEFRDLPWQDCQELFSVNSQIMIALKHAVSLQETDWCFVKIIERALKSG-QF----PMLNELGHELAAHGLSEKKPQ-LTYNQVFSSPWAANGQDED---RHLFLTQKMQGWPRKKDTDRVDDVQMNLLKLIILFSTEF-VTLERGDIVEHVQMRFIRLLQKYLKFKYGSEAGVKLGNGLLILSYAKEVID 397 + S V + +C +C DVAG H YYG Q C CR FF+R V+ + C + NC I +R+ C+ CRF+KCL SGMK +V++ H++ K + +K+ + + + +S ++ F + + + +F+ + L+ GG + F SI + L D L S N + L +V D C E LK G +F P ++++ A+ L KKP+ LT + F S N +D RH L ++ R+ D + + LL II+F+TEF V+L+ ++ Q +++ LL +YL+ Y A KL ++I ++V + Sbjct: 79 ETQSEVGTQQPLCPICNDVAGKHFYYGVQACISCRGFFQRSVRNRFHLKFICCKGTQNCRITARSRKNCKWCRFQKCLQSGMKTCYVMT-HDKSGLPPKSKLILPIKAMVKTANLSQIFTEHEVDKALSIYKNLLSFGYRSYYQLFSQNEQEFMTFLRALNDQGGGPS-MISEAFTETNKQATINYFFSIDDMASLTPFDRMTLISHNFPSIFGLLWSVYSYTPDLC--TFYEEFLKHGYEFRDREPEIDKILMVFEANQLLGKKPKNLTIDVTFRS----NSATQDLIQRHDNLVHEVNSGLRESSQSSADYIIVMLLSHIIMFATEFAVSLQDKAKIQATQEKYLVLLHRYLRTHYQGRARAKLSETMMIFEPCRQVFE 451
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|657600360|gb|AID52841.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 121.709 bits (304), Expect = 2.029e-26 Identity = 104/374 (27.81%), Postives = 163/374 (43.58%), Query Frame = 0 Query: 44 CLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHE--------RKRRYQSHVKS------------SPNLPRVPDLILNSDDTTYISDQ--------MRMMDFHFH----------QSMDAVCRQKPDFIRQMAVLSYYGGNSDYQFYQEF--NILCNDFVFQVLSSIQEFRDLPWQDCQELFSVNSQIMIALKHAVSLQETDWCFVKIIERALKSGQFPMLNELGHELAAHGLSEKKPQLTYNQVFSSPWAANGQDEDRHLFLTQKMQGWPRKKDTDRVDDVQMNLLKLIILFSTEFVTLERGDIVEHVQMRFIRLLQKYLKFKYGSE 377 C VCGD A H +YGG C CRAFFRR V + Y + C ++SNC++ TR+ CQ CRF KC+ +GMK +WVLSD E R R+ QS V +P + + +S+ + + Q R++ +H Q+ P + Q+ L++ D EF + C + + + + F L D + L S N ++ ++ A SL ++ + L +G + +E+ H HG++ Q+F PW A G ++ T + ++DT +V L +L+ LF TE V L+ +E VQ LL KYLK +YG + Sbjct: 122 CHVCGDRAPNHCHYGGIACFSCRAFFRRSVPK--YDTYTC-SSSSNCVVTPATRKNCQKCRFDKCVEAGMKASWVLSDEEKLERLEKKRSRKGQSTVSMDSSGSSSPVSSYTPPSSQYDQMSESSEGQSRPASQESFGGPQESRILSYHEERCIEQWVGDLQTTRTTVEMSPQLLDQIVRLTHTHETIDTDTIVEFFKTVYCR--IVKFVGEVDGFSTLSDTDKKTLLSKNMDMLSTIQLASSLHPNGQGNLEA--QFLYTGHY---SEISHLRGHHGIA-------MEQIFVEPW-AKGDTHKKYFSSTIRQLAKLLREDT-KVS----TLFQLVALFHTENVELDNKGTIESVQEGMATLLHKYLKQRYGQQ 472
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|728054567|gb|AIY67763.1| (HR97a-like receptor 4 [Tigriopus japonicus]) HSP 1 Score: 115.931 bits (289), Expect = 1.172e-24 Identity = 99/379 (26.12%), Postives = 175/379 (46.17%), Query Frame = 0 Query: 42 KICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVCRQKPDFIR--QMAVLSYYGGNSDYQFYQEFNILCN------DF----------VFQVLS-SIQEFRDLPWQDCQELFSVNSQIMIALKHAVSLQETDWC-----FVKIIERALKSGQF-PMLNELGHELAAHGLSEKKPQLTYNQVFSSPWAANGQDEDRHLFLTQKMQGWPRKKDTDRVDDVQMNLLKLIILFSTEFVT-LERGDIVEHVQMRFIRLLQKYLKFKYGSEAGVKLGNGLLILSYAKE 394 ++C VC AG HNYYGGQVC CRAFFRR +Q + C +A C+ID +R+ C CRF+KCLL+GM W+++D ERK ++ K S I+ + I R ++ F + + R +++VL+ + + + N DF +F+ ++ ++E DL +D + L NS AL ++ D+ + ++ AL++ P L L +S P L++ +S+ + + + K+Q R+ +D + + ++ L ++F ++ + L+ G VE +Q I +L +YL+ KYG +A K+G ++++SY +E Sbjct: 69 RLCHVCNLPAGKHNYYGGQVCESCRAFFRRSIQNQTHPIYHC-KAKKCCIIDSKSRKSCAWCRFQKCLLAGMNPKWIITDQERK--FKLEAKQSK--------IMKAKMKQEIVPIQRPVELKFTVEEKLKVERLSKYARKFKVSVLANHLAQDIAPLKTLWKLALNLETPSVDFIHFLEEKETTIFRTIALGLEEMTDLDSEDRETLVQRNSTAFFALIMSIYFNPGDFARHLEDVTEALDIALQANDPNPDLKNAVETLEVIKMS-NFPGLSFETFYSNCPNKDENLSNAQRNIMNKIQSALREMPNKPIDAIIICIVILNLIFLSDGSSPLKDGKKVERIQNDQIFMLHRYLRSKYGDKASGKMGKLVMLMSYTQE 435
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|1325265241|ref|XP_023336689.1| (oxysterols receptor LXR-alpha-like [Eurytemora affinis]) HSP 1 Score: 112.464 bits (280), Expect = 5.547e-23 Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 0 Query: 27 SHLDSDGSSSVSSTSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRRYQSHVK 133 S + SS + + +C VCG+ AG H+YYGGQVC CRAFFRR VQ Y C+ + +C I+ TR+ CQ CR+ KCL GM+ +W+LS+ ER RR+ K Sbjct: 167 SPFKRERSSRILCENPVCQVCGEKAGKHSYYGGQVCPSCRAFFRRSVQSRCYTGFRCINRSESCPINLLTRKNCQYCRYHKCLSCGMRPSWILSEEERIRRFHGRTK 273
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|728054565|gb|AIY67762.1| (HR97a-like receptor 6 [Tigriopus japonicus]) HSP 1 Score: 111.309 bits (277), Expect = 7.314e-23 Identity = 111/435 (25.52%), Postives = 183/435 (42.07%), Query Frame = 0 Query: 5 ERNFMQELEHFLDQNQITQGSRSHLDSDG-----------SSSVSS----TSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLS-DHERKRRYQSHVKSSPNLPRVPDLILNSDDTTYISDQMRMMDFHFHQSMDAVCRQKPDFIRQMAVLSYYGGNSDYQFYQEFNILCNDFVF------QVLSSIQEFR----------DLPWQDCQELFSVNSQIMIALKHAVS-LQETDWC-FVKIIERALK--SGQFPMLNELGHELAAHGLSEKKPQLTYNQVFSSPWAANGQDEDRHL--FLTQKMQGWPRKKDTDRVDDVQMNLLKLIILFSTEFVTLERGDIVEHVQMRFIRLLQKYLKFKYGSEAGVKLGNGLLILSYAKEVIDIQQR 401 + +F +LE FL ++ + S D SSSV T ICLVCG+ AG H YYGGQVC CRAFFRR V Y C C+I+ + + C+ CRF+KCL SGM+I WV + D S K L I S + ++ + ++ + + C DF + V Y + F +F++ N F+ Q+++ F+ DL D ++L + N+ ++ L V L D + ++ LK + Q + L+ LS+ +S + DE + L L ++Q W R D + L+ +I+F L+ V +Q +F+ +LQ+YLK K +A K+G + ++ + + ++Q++ Sbjct: 52 QSSFNSDLESFLHESNVVSKSPQISDDSEMCKSDVSFKQVSSSVEPEAIKTQLICLVCGNAAGKHCYYGGQVCVSCRAFFRRAVLGKSYSEFKC-SKEEQCVINSKSWKSCRFCRFQKCLQSGMRIAWVTTEDKPSGPSKGSKAKPKGKLIVPTSAIQRSIQLKWTLEEECYVRGFYNHAWENWCHVITDFYARHPV---YFASIISVFLLDFSVENNPFMTKSEFYGQMVNMELSFKRFWFTHPDMNDLCQADQEQLVNENNDLIFTLCRCVQYLNAQDVAKYSRLYRDRLKERASQDESCQNVVAMLSNFTLSDHPEDNITPNTTTSLCLLSADDESKSLESSLMTEIQEWNRLFPHGPCDPIMQTLMGYLIIFDPNMKNLQDYKKVCDIQTKFLHMLQRYLKAKVPKQATKKIGQAVEFITKLRTLSNLQRQ 482
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|1325306415|ref|XP_023334818.1| (oxysterols receptor LXR-alpha-like [Eurytemora affinis]) HSP 1 Score: 100.523 bits (249), Expect = 1.228e-20 Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 0 Query: 42 KICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERK 125 + C VCG+ AG H+YYGGQVC+ CRAFFRR V ++ CV+ N NC ++ TR++CQ CR+R C +GMK +WVL+D E+K Sbjct: 42 RACKVCGEEAGRHSYYGGQVCASCRAFFRRSVNSGANKAYFCVK-NGNCEVNSKTRKQCQYCRYRLCEDAGMKTSWVLTDTEKK 124
BLAST of thyroid hormone receptor alpha 1 vs. nr
Match: gi|657600346|gb|AID52834.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 97.8265 bits (242), Expect = 2.664e-18 Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 0 Query: 31 SDGSSSVSSTSKICLVCGDVAGLHNYYGGQVCSGCRAFFRRCVQRDIYQSLGCVEANSNCLIDKTTRRRCQGCRFRKCLLSGMKITWVLSDHERKRR 127 S GSSS + + C VCG+ +G H YYG QVCS CRAFFRR + C +A+ C ID + + C+ CRF+KCL +GM+ WV++D ER +R Sbjct: 102 SSGSSSCETAAFHCPVCGNPSGKHLYYGAQVCSSCRAFFRRSTINSAAEEFRC-KADKKCGIDSKSWKSCKFCRFQKCLSAGMRPNWVMNDEERTQR 197 The following BLAST results are available for this feature:
BLAST of thyroid hormone receptor alpha 1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of thyroid hormone receptor alpha 1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of thyroid hormone receptor alpha 1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold28_size608977:174167..181796+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold28_size608977-processed-gene-1.5 ID=snap_masked-scaffold28_size608977-processed-gene-1.5|Name=thyroid hormone receptor alpha 1|organism=Tigriopus kingsejongensis|type=gene|length=7630bp|location=Sequence derived from alignment at scaffold28_size608977:174167..181796+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'thyroid hormone receptor alpha 1' has the following synonyms
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