retinoid x, snap_masked-scaffold296_size217904-processed-gene-1.3 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000009940 (supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-1 gene:EMLSAG00000009940 transcript:EMLSAT00000009940 description:"maker-LSalAtl2s649-augustus-gene-4.7") HSP 1 Score: 53.1434 bits (126), Expect = 4.288e-7 Identity = 22/74 (29.73%), Postives = 40/74 (54.05%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWV 138 C +C + ++ HYG C CK+FF+R+++ + + C C ++ R CQ CR C+++GM+ + V Sbjct: 434 CVVCGDKSSGK-HYGQFTCEGCKSFFKRSVRRALT--YQCRGSRSCPIDQHHRNQCQHCRLKKCIKMGMRKEAV 504
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7") HSP 1 Score: 52.373 bits (124), Expect = 4.432e-7 Identity = 27/90 (30.00%), Postives = 43/90 (47.78%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAV--ENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQ 152 C++C + ++ HYG C C FF+R+I+ + L+ C E C ++ R C+ CR C+ VGM V ++ RRQ Sbjct: 34 CKVCTDHSSGK-HYGIFACDGCAGFFKRSIRR--NRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHERGPRNSTLRRQ 120
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000002847 (supercontig:LSalAtl2s:LSalAtl2s163:976489:976827:1 gene:EMLSAG00000002847 transcript:EMLSAT00000002847 description:"augustus_masked-LSalAtl2s163-processed-gene-9.2") HSP 1 Score: 48.1358 bits (113), Expect = 6.490e-7 Identity = 21/61 (34.43%), Postives = 40/61 (65.57%), Query Frame = 0 Query: 417 NYEYAYNI--DHPESQYGQIEAKDGNEVVGAYEVSTNDGQQRTISYSVSEGSGFKANVTYQ 475 NY + +N+ D+ + +GQ E ++G+ VG+Y V+ DG+ + ++Y+V G++A VTY+ Sbjct: 35 NYNFNWNVQDDYSNNNFGQEETRNGDNTVGSYFVALPDGRIQRVTYTVDPYGGYQAQVTYE 95
BLAST of retinoid x vs. SwissProt
Match: gi|114152848|sp|Q94407.3|NHR48_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-48) HSP 1 Score: 93.9745 bits (232), Expect = 3.440e-18 Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMER----RQSQGMESLPRQVGEACEATWSRDSEDQ 178 +VCR+C + A + ++ I C SCKAFFRR E C +CE+N VSR+ CQ+CR C VGMK +W++S++ R+++ +R R+ + +++ R + EAC S +S D+ Sbjct: 98 KVCRVCGDKAFSY-NFNVITCESCKAFFRRNANKEKE--IRCPFNEQCEINMVSRRFCQRCRLTKCFAVGMKKEWIMSEEARLEKKQRVEENRERRLQDAMNRALEEACMEDESENSYDE 214
BLAST of retinoid x vs. SwissProt
Match: gi|56405103|sp|P68305.1|THB_CAIMO (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2 >gi|56405104|sp|P68306.1|THB_CHICK RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 85.8853 bits (211), Expect = 1.899e-16 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 9 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAK 96
BLAST of retinoid x vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A) HSP 1 Score: 84.3445 bits (207), Expect = 6.715e-16 Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERV--------KRMERRQSQGMESL 159 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ R +RR+ + +SL Sbjct: 13 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSL 120
BLAST of retinoid x vs. SwissProt
Match: gi|3915110|sp|Q28571.1|THB_SHEEP (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 84.3445 bits (207), Expect = 1.042e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 99 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 186
BLAST of retinoid x vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 83.5741 bits (205), Expect = 1.117e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 13 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAK 100
BLAST of retinoid x vs. SwissProt
Match: gi|939319623|sp|G5EFF5.1|DAF12_CAEEL (RecName: Full=Nuclear hormone receptor family member daf-12; AltName: Full=Abnormal dauer formation protein 12) HSP 1 Score: 85.5001 bits (210), Expect = 1.152e-15 Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERR 151 + CR+C + AT + ++ I C SCKAFFRR F C CE+NSVSR+ CQKCR C VGMK +W+L++++ +R R Sbjct: 116 KTCRVCGDHATGY-NFNVITCESCKAFFRRNALRPKE--FKCPYSEDCEINSVSRRFCQKCRLRKCFTVGMKKEWILNEEQLRRRKNSR 201
BLAST of retinoid x vs. SwissProt
Match: gi|586094|sp|P18113.2|THB_RAT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 83.9593 bits (206), Expect = 1.653e-15 Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 0 Query: 25 IVHADRVPMEADPKPAVSTSVKRGRPKKLNPTGP--VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 I H D P + + + S + KK P +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 67 IFHLD--PDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 188
BLAST of retinoid x vs. SwissProt
Match: gi|586093|sp|P37242.1|THB_MOUSE (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 83.9593 bits (206), Expect = 1.991e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 101 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 188
BLAST of retinoid x vs. SwissProt
Match: gi|586092|sp|P10828.2|THB_HUMAN (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 83.5741 bits (205), Expect = 2.377e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 101 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 188
BLAST of retinoid x vs. SwissProt
Match: gi|6093487|sp|Q25604.1|NHR1_ONCVO (RecName: Full=Nuclear hormone receptor-like 1) HSP 1 Score: 82.0333 bits (201), Expect = 3.157e-15 Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 0 Query: 50 PKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR----MERRQSQGMESL 159 P+ + P P C +C + AT LHY +I C CK FFRR +Q ++ ++ C RCE++ +SR CQ CR+ CLR GM VL++ ER+ + ++ R+ + +E L Sbjct: 26 PRYMKPGQP------CVVCGDDAT-GLHYRAITCEGCKGFFRRTVQQKI--VYKCKSIERCEISKISRNICQFCRFQKCLRNGMTKSLVLNETERIAKRKMIIDNRERRKLEHL 130
BLAST of retinoid x vs. nr
Match: gi|657600352|gb|AID52837.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 419.083 bits (1076), Expect = 9.750e-132 Identity = 214/383 (55.87%), Postives = 270/383 (70.50%), Query Frame = 0 Query: 29 DRVPMEADPKPAVSTSVKRGRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMESLPRQVGEACEATWSRDSEDQPRET--------------------------SRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSESAKEQIQVSMGEDDALSSGILIDRSKEAIDKAGSISYWNWNTIQTYHSPDVEDVFSNQLKRLGTLLERNPVLLKLI 385 D V + D P STS + KK + V++ E CR+C+EPATRHLHYG+IVCFSCKAFFRRAIQN V+ F C+V+ +CEMNS+SRKHCQKCRW+ACL+VGM + WVLSK+ER+ R+ RR+ + + + GE A + D P +T RD+ + S SS SSSPE+ +P+ +S D ED+FI+ IT IYDQQF SVSLGEVIIKEMIVSSLY+VPISVSSSLSAYRLMV+RVTKIANSFDTF P++ MALLKKNADPMVL+NGATFFSESA +QIQVS+G +D +S +LIDRS+++I A +I+YWNWN+IQ H DVE++FS ++RLG LL+ NP +LK+ Sbjct: 2 DMVKEDHDRDPTPSTSAPTTKSKK--ASSQVEFSEKCRVCKEPATRHLHYGAIVCFSCKAFFRRAIQNNVYKFFNCSVDGKCEMNSISRKHCQKCRWEACLKVGMNANWVLSKEERLDRLNRRR---VSQVSPESGEFDPAPVNVQISDTPNQTLVPRDRREYNETSAKSVSQQASSSSNDRDSPPALSSGSSDASSSPEMKVPRLISGDVNEDRFIQKITCIYDQQFLSVSLGEVIIKEMIVSSLYDVPISVSSSLSAYRLMVSRVTKIANSFDTFFNLPIQTGMALLKKNADPMVLVNGATFFSESASDQIQVSLGAEDKEASMLLIDRSEKSIKSAKAITYWNWNSIQCQHDQDVEEMFSQNMERLGNLLDHNPTILKVF 379
BLAST of retinoid x vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis]) HSP 1 Score: 130.183 bits (326), Expect = 3.565e-27 Identity = 69/169 (40.83%), Postives = 95/169 (56.21%), Query Frame = 0 Query: 48 GRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMER-RQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALES---HGSTSSVQSSSPELGIPKQVSFD 212 + K L+PT E C+IC EPA +H+HYG++ CFSC+AFFRR+IQN+ +TC CE+N +RK+CQ CR+ CL VGMK+ WVLS++ER +R + R+ LP+ E + D ED+ E ES H Q+S E+ Q SFD Sbjct: 30 AQAKLLSPT------EKCKICNEPAAKHIHYGAMTCFSCRAFFRRSIQNKTANSYTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRRFRKVRERHEANDLPQ--NHMPEDDYHDDGEDEVEENGGQLPESNSYHEQNGRGQNSYEEVRSILQSSFD 190 HSP 2 Score: 112.464 bits (280), Expect = 1.460e-21 Identity = 65/213 (30.52%), Postives = 120/213 (56.34%), Query Frame = 0 Query: 179 PRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFS--ESAKEQIQVSMGEDDALSSGILIDRSKEAIDKAGSISYWNWNTIQTYHSPDVEDVFSNQLKRLGTLLERNPVLLKLILTWS 389 P E + D E + + + PE + F P E + ++N+ + +++++RSV+ GE +IKEMI S++++P+S ++++ YRL+V R+T+IAN + F + ALLK+NA+ +V L GA FF ++ +Q+ +SMGEDD + + + D I Y +N+IQ ED ++ +++G +L N + ++LT++ Sbjct: 406 PDEMNSDDEEGYVNMNGFYDPQPE------IIFTPDEAEILKNVVESHNERYRSVNFGEELIKEMIFCSMFSIPVSTQAAITGYRLIVERITRIANHQEAFKQLSNEDQGALLKENANLLVSLRGAIFFDSQKNGAQQVMLSMGEDDIQTIENMFSKLLRE-DTMKHIDYKTFNSIQAIGLSPKEDRYNYLQEKVGKVL--NDETISILLTYT 609
BLAST of retinoid x vs. nr
Match: gi|657600356|gb|AID52839.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 126.331 bits (316), Expect = 6.300e-26 Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 0 Query: 51 KKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMER-RQSQGMESLPRQVGEACE 168 KK NP + E CR+C EPA RH+HYGS+ CFSC+AFFRR+IQN+ ++C + +CE+ SRK+CQKCR++ CL GMK WVLS++ER +R + R+ + ++ R+ E E Sbjct: 76 KKENPL--ISDTEKCRVCGEPAARHVHYGSVTCFSCRAFFRRSIQNKAWNNYSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKKARQNSTRKSNEGSE 192 HSP 2 Score: 124.02 bits (310), Expect = 2.890e-25 Identity = 66/186 (35.48%), Postives = 110/186 (59.14%), Query Frame = 0 Query: 204 GIPKQVSFDPTEDQFIE--NITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSESAK--EQIQVSMGEDDALSSGILIDRSKEAIDKAGSISYWNWNTIQTYHSPDVEDVFSNQLKRLGTLLERNPVLLKLI 385 GIP + +ED+ I+ ++ +D+ +RSV+ GE +IKE+++ S++ +P+S + +++AYRLM+ RVTK+A F+ F + ALLK NAD MV L G FF E K +QI S+G DD + ++ + +A G I Y N+N+IQ D E ++ L R+G+++ P L+ ++ Sbjct: 364 GIPLEPQMTVSEDEIIQIRRLSYEHDKFYRSVAFGEELIKELVMCSVFGLPLSPNQAMTAYRLMIQRVTKVAQGFEPFNRLDRHAQKALLKTNADLMVSLRGGVFFDEKKKGIDQILFSLGVDDVDLAKRMLMTTLKATGSLGRIEYKNYNSIQELGDNDTEHRYNALLSRVGSVISLVPELVNVM 549
BLAST of retinoid x vs. nr
Match: gi|657600358|gb|AID52840.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 114.775 bits (286), Expect = 1.517e-22 Identity = 65/180 (36.11%), Postives = 107/180 (59.44%), Query Frame = 0 Query: 214 TEDQ--FIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSES--AKEQIQVSMGEDDA-LSSGILIDRSKEAIDKAGSISYWNWNTIQTYHSPDVEDVFSNQLKRLGTLLERNPVLLKLILTW 388 TED+ ++ + I+D ++SV+ GE ++K ++++S + +P++ S ++ AYRLM+ RVTK+A FD F P+ + LLK NAD MV L GA FF + +QI SMG DD ++ +++ SK A K I Y ++NTIQ + E+ + L ++G ++ P L K +LT+ Sbjct: 303 TEDEVLLLQKLEYIHDHNYQSVAFGEELVKALVMTSAFGIPLTPSQTMMAYRLMIQRVTKVAQGFDEFRDLPLEDQTTLLKSNADLMVSLKGAVFFDKRNMGIDQILFSMGLDDIEMAKRMIMSTSKTAGCKMNRIDYKSYNTIQELNDTPDEERYQWLLAQIGDVITSFPSLTK-VLTY 481 HSP 2 Score: 114.39 bits (285), Expect = 2.166e-22 Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQ 154 E C+ICQ+PA RHLHYG+I CFSCKAFFRR Q++ + F C C + RK C+KCR++ C+RVGMK VLS +E++KR ++ S+ Sbjct: 27 EECQICQDPAIRHLHYGAITCFSCKAFFRRTSQSKAYQKFMCKSTGECNVLHKLRKKCRKCRYEKCIRVGMKPSLVLSDEEKIKRFKKSLSK 118
BLAST of retinoid x vs. nr
Match: gi|675373878|gb|KFM66780.1| (Vitamin D3 receptor B, partial [Stegodyphus mimosarum]) HSP 1 Score: 113.235 bits (282), Expect = 2.747e-22 Identity = 75/252 (29.76%), Postives = 115/252 (45.63%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVK----RMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELG-IPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 +VC C + A + H+G I C SCKAFFRR++QNE + F C E +CE+ SRK CQ CR+ CL +GM++ WV++++ER++ RMER+Q QG Q E S +P T+S P++ +PK + P + + IE + Y+ + V E + K S I L + V + T + DTF + LL+ + + GA + E Sbjct: 61 KVCGACGDRAKSY-HFGGISCDSCKAFFRRSVQNEAYKNFHCPYEGKCEITITSRKCCQYCRFKKCLSIGMETGWVMTEEERLQLVKNRMERKQRQGASESAHQATE---------SGKKPHR-----------TTSFSEYEPDINDLPKYLG--PEDMRTIETLVNAYEASYTEVPFSEHLHKVGSASGRTRTEI-----LDMFFTTVKQFTNFSQRLDTFSKIQQHDQEILLRTGVLELCFIRGAYVYDE 284
BLAST of retinoid x vs. nr
Match: gi|1238896772|ref|XP_022235203.1| (vitamin D3 receptor-like [Limulus polyphemus]) HSP 1 Score: 111.309 bits (277), Expect = 6.090e-22 Identity = 76/275 (27.64%), Postives = 127/275 (46.18%), Query Frame = 0 Query: 39 PAVSTSVKRGRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERV----KRMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 P S+S G P + + +VC +C + A + H+G I C SCKAFFRR++QNE + F C E +C++ SRK CQ CR+ CL +GM+ WV++++ER+ RME+RQ QG D+PR + S S E+G K ++ + +D IE++ +Y+ +++V E + ++ + S + + + ++ + A + + F P + LL+ M L GA F E Sbjct: 5 PNGSSSSSTGLPAEEASRSFSKHQKVCGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEGYKNFHCPYEGKCDITISSRKCCQYCRFQKCLAIGMEKGWVMTEEERLHLLRSRMEKRQRQGTT-----------------ESDKPRRKT--------SVSDYDPDINEMG--KFLTENDVQD--IESLITMYEVSYQAVGFSEKL-------TIQSSERSRTEIIDMFFTVIKQFAHFAQNLEGFSVIPHSDQQVLLRSGVMEMCFLRGAYVFDE 242
BLAST of retinoid x vs. nr
Match: gi|657600360|gb|AID52841.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 112.079 bits (279), Expect = 6.954e-22 Identity = 71/261 (27.20%), Postives = 124/261 (47.51%), Query Frame = 0 Query: 46 KRGRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVS-FDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGAT 305 +R PK L+ C +C + A H HYG I CFSC+AFFRR++ + +TC+ + C + +RK+CQKCR+D C+ GMK+ WVLS +E+++R+E+++S+ +S V + S S P + D + S +S G P++ E++ IE +V + ++ +++ + + I + + ++ + R+ K D F T K LL KN D + + A+ Sbjct: 113 RRSSPKHLS----------CHVCGDRAPNHCHYGGIACFSCRAFFRRSVPK--YDTYTCSSSSNCVVTPATRKNCQKCRFDKCVEAGMKASWVLSDEEKLERLEKKRSRKGQS---TVSMDSSGSSSPVSSYTPPSSQYDQMSESSEGQSRPASQESFGGPQESRILSYHEERCIEQWVGDLQTTRTTVEMSPQLLDQIVRLTHTHETIDTDTIVEFFKTVYCRIVKFVGEVDGFSTLSDTDKKTLLSKNMDMLSTIQLAS 358
BLAST of retinoid x vs. nr
Match: gi|1238862933|ref|XP_022247713.1| (nuclear hormone receptor HR96-like isoform X1 [Limulus polyphemus] >gi|1238862935|ref|XP_022247714.1| nuclear hormone receptor HR96-like isoform X1 [Limulus polyphemus] >gi|1238862937|ref|XP_013779895.2| nuclear hormone receptor HR96-like isoform X1 [Limulus polyphemus] >gi|1238862939|ref|XP_022247715.1| nuclear hormone receptor HR96-like isoform X1 [Limulus polyphemus] >gi|1238862941|ref|XP_022247716.1| nuclear hormone receptor HR96-like isoform X1 [Limulus polyphemus]) HSP 1 Score: 107.457 bits (267), Expect = 1.509e-20 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERV----KRMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 +VC +C + A + H+G I C SCKAFFRR++QNE + F C E +CE+ SRK CQ CR+ C+ +GM+ WV++++ER+ RMER+Q QG + + + + D D + + + + S IE + Y+ ++++S E + + S + L + ++ + + A + + F P R + LL+ M L GA F E Sbjct: 51 KVCGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEGYKNFHCPYEGKCEITLSSRKCCQYCRFQKCVSIGMEKGWVMTEEERMHLLRSRMERKQRQGTSEPDKPPQKVSISDYDPDINDVGKYLTENDVRS-----------------------------IEILINAYEISYQTISFSEKLTPQTSERSRTEI-------LDMFFTVIKQFSHFAQNLECFSYIPQRDQEVLLRSGVMEMCFLRGAYVFDE 264
BLAST of retinoid x vs. nr
Match: gi|657600348|gb|AID52835.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 107.457 bits (267), Expect = 1.569e-20 Identity = 66/191 (34.55%), Postives = 98/191 (51.31%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMESLPRQVGEACEAT-----WSRDSEDQPRETSRD-ALESHGSTSSVQSSSPEL------GIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEM 243 C +C P+ +H +YG+ VCFSC+AFFRR+ N T F C C +NS S K C+ CR+ CL GMKS WVL+ +ERV+R R+ + + R+ G A T W+ D E Q R+ D L+ G + SS+P + + FDP + IY + +S+S +I+K++ Sbjct: 108 CPVCDNPSGKHSYYGAQVCFSCRAFFRRSTINSTFTEFQCKDSKTCGINSKSWKSCKFCRYQKCLSAGMKSTWVLNDEERVQRNANRKR--LRKI-REAGVAFSETFIGNQWTTDEEHQIRQARNDFLLKGFGVIAQFCSSNPNIFDRYVDCLNGNTPFDPMLVGYTRRF--IYSEVMKSIS-DLLIMKDI 292
BLAST of retinoid x vs. nr
Match: gi|1238867475|ref|XP_013781143.2| (vitamin D3 receptor-like [Limulus polyphemus]) HSP 1 Score: 107.071 bits (266), Expect = 1.936e-20 Identity = 75/251 (29.88%), Postives = 116/251 (46.22%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVK----RMERRQSQGM--ESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFF 307 + C +C + A + H+G I C SCKAFFRR++QNE + F C +CE+N SRK CQ CR+ CL +GM+ WV++++ER RMER+Q QG+ + PRQ C H S ELG K ++ D ++ IE I Y+ +++++ + +L S + L + ++ + + A S + F P R + LL+ M L GA F Sbjct: 33 KACGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEGYRNFHCPYGKKCEINITSRKCCQYCRFQKCLSIGMEKGWVMTEEERQNLLRSRMERKQQQGISQSAKPRQKMNVC---------------------GHDPDIS------ELG--KYLTEDDVQN--IETIINSYEISYQTITFTNKL-------TLQTRERSRTEILDMFFTVIKQFSHFAQSLECFSYIPQRDQEVLLRSGVMEMCFLRGAYVF 244 The following BLAST results are available for this feature:
BLAST of retinoid x vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 23
Pagesback to top
BLAST of retinoid x vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of retinoid x vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold296_size217904:69141..102945- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold296_size217904-processed-gene-1.3 ID=snap_masked-scaffold296_size217904-processed-gene-1.3|Name=retinoid x|organism=Tigriopus kingsejongensis|type=gene|length=33805bp|location=Sequence derived from alignment at scaffold296_size217904:69141..102945- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'retinoid x' has the following synonyms
Add to Basket
|