rna helicase, snap_masked-scaffold2_size2283618-processed-gene-10.6 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000004918 (supercontig:LSalAtl2s:LSalAtl2s259:1039310:1040989:-1 gene:EMLSAG00000004918 transcript:EMLSAT00000004918 description:"maker-LSalAtl2s259-augustus-gene-10.16") HSP 1 Score: 240.736 bits (613), Expect = 1.095e-74 Identity = 147/362 (40.61%), Postives = 212/362 (58.56%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRA----LVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDS--KVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKE--QAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGIDKGF 356 S+LG LK K+ + PTPIQ PV+ SG+D+I A+TG+GKT AF +P L ++ + K V + L++APTRELA+Q + + + + + SL VYGGV+ Q Q L GV+ILVATPGRLLDLA + V + +V+DEADRMLD GF +DI +I+ + RQ LFSAT D +R+ F S KV+ + +++A T + Q + VD+ ++ + L+ + + ++ LIF+ K A +L + L K + +IHGD+SQ R + + +FKSGK+ L+AT VAARG+DI + V+NY P +DY+HRIGRTGRAG SGI F Sbjct: 114 MSSLG--KKCLKCCKS--FKAPTPIQSMTWPVVASGRDVIGIAETGSGKTLAFSVPALAHISERKQRPVKGVNSMPIMLIVAPTRELAMQSQVVLESAGKEIGFKSLCVYGGVNKYAQRQSLKSGVEILVATPGRLLDLAEEGCVDLSGVSYVVLDEADRMLDQGFEQDIRRILGQTHKERQTCLFSATWPDSIRKLAHEFLKSPIKVTIGSEDLAAGKT------VTQIVEVVDERSRDGKIKGLLNKYHKKKNRILIFVLYKREADRLWNSL-KHEWNCTTIHGDKSQDARIQAVENFKSGKIPILIATDVAARGLDIPDVEYVLNYSFPLTIEDYVHRIGRTGRAG-----KSGIAHTF 459
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000005110 (supercontig:LSalAtl2s:LSalAtl2s26:913218:916036:-1 gene:EMLSAG00000005110 transcript:EMLSAT00000005110 description:"maker-LSalAtl2s26-augustus-gene-8.40") HSP 1 Score: 240.736 bits (613), Expect = 1.690e-73 Identity = 151/387 (39.02%), Postives = 218/387 (56.33%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELR----GKSVR------ALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKII--DRLPTA--RQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDK-DTKSALL-----SHLIKEQAWDQ----ALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGI-DKGFGAARDILE 364 F ++ + + + +K Y+ PTP+QK AIP I +G+DL+A AQTG+GKTAAF++PIL + G + K+ R AL+LAPTRELA Q+ +A + VYGG + QM L G +LVATPGRL+D+ + + ++ + LV+DEADRMLDMGF I KI+ D +P A RQ L+FSAT +++ F + + + +T + I Q ++ VD+ D +S LL + L K A ++ L+F+E + A +L L K SIHGDR+Q RE L F+SG LVAT VAARG+DI + V+N+DLP ++Y+HRIGRTGR G L +S D+ +D++E Sbjct: 182 FMDINMAEIMANNIKLANYSKPTPVQKHAIPAITNGRDLMACAQTGSGKTAAFLVPILNRIFEGGPPQPAPHSKNKRSKQYPMALILAPTRELATQIFDEAKKFAYRSLVQPCVVYGGANVFEQMMDLDRGCHLLVATPGRLVDMLDRGKISLEQCKYLVLDEADRMLDMGFEPQIRKIVENDNMPPAGQRQTLMFSATFPKEIQMLARDFLANYIFLAVGRVGST-----SENITQKIVWVDELDKRSFLLDLLEAAGLAKGPAGNEDSSLTLVFVETRKGADQLDEYLYKEGFPVTSIHGDRTQREREDALRRFRSGNTPILVATAVAARGLDIPNVKHVINFDLPSDVEEYVHRIGRTGRMGNLGLATSFFNDRNRNLTKDLVE 563
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000001805 (supercontig:LSalAtl2s:LSalAtl2s1306:97666:99668:-1 gene:EMLSAG00000001805 transcript:EMLSAT00000001805 description:"maker-LSalAtl2s1306-augustus-gene-0.42") HSP 1 Score: 237.654 bits (605), Expect = 1.087e-72 Identity = 155/401 (38.65%), Postives = 217/401 (54.11%), Query Frame = 0 Query: 2 PFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKS----VRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEG-VDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDR--LP--TARQNLLFSATMNDDVREFVSHF-SDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWD---QALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGIDKGFGA--ARDILEGLSVLEGSIAEDISKTYDLVQQG 387 PF+++ L D I + YT PTP+QK A+P+IL DLI+ AQTG+GKTA F+LPI+ K S R L+L PTREL +Q+ Y +++ +YGG +E L+ VDIL ATPGRL+D+ + + F+ +E LVIDEADRML+MGF ID++++ +P T RQ LLFSAT +++ S + D ++ V A+ I+Q ++ V K L +KE + + LIF KK L ++L A SIHGDR Q RE+ L DFK G LVAT VA+RG+DI K+S V+NYDLP Y+HRIGR+GR G S + F A+D++ L + + E + K D+ G Sbjct: 170 PFTSI-LQDNIARC----SYTRPTPVQKHAVPIILMKHDLISCAQTGSGKTAXFLLPIIHSLHKKRISSNSSDKATPRTLILGPTRELVVQINDEARKYCAKMNIDCRVIYGGSSTESSKYILLNNRVDILSATPGRLIDMLGKEHISFENIEFLVIDEADRMLEMGFRESIDEVVNHFTMPGTTKRQTLLFSATFPPEIQILASEYLKDYLFLKVGV------VGGASEDIEQVIVQVKDYEKMTKLLETLKENEVNPETKILIFARKKRGVDFLATRLCLDKHPATSIHGDRFQEQREEALRDFKRGSKPILVATEVASRGLDIPKVSLVINYDLPQDISTYVHRIGRSGRVGNSGKSISFYESEFDRPLAKDLVNVLKEAKQHVPEWLEKQGDVYYGG 559
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000010143 (supercontig:LSalAtl2s:LSalAtl2s66:712270:714003:-1 gene:EMLSAG00000010143 transcript:EMLSAT00000010143 description:"augustus_masked-LSalAtl2s66-processed-gene-7.1") HSP 1 Score: 229.18 bits (583), Expect = 2.068e-70 Identity = 136/335 (40.60%), Postives = 192/335 (57.31%), Query Frame = 0 Query: 13 LKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGK--SVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKS--ALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 + A++ +G+ P+PIQ QA P +L G DLI AQTGTGKT AF+LP + R K LVL+PTRELA+Q+ V Y E+ + S+ VYGG D + Q++ + +GV I++ATPGRL DL + + + LV+DEADRMLDMGF I KI+ + RQ ++ SAT VR S++ I V I + A + Q + V+ + + LL D+A+IF+ KK S L ++ SIHG R Q RE+ L DFK G ++ L+AT VA+RGID+ +S V+N+D P ++Y+HRIGR+GRAG Sbjct: 1 MTAIQKRGFKNPSPIQCQAWPYLLKGLDLIGIAQTGTGKTLAFLLPSFIHIDSQSIPREKRGGPNVLVLSPTRELALQIADEVKKY-EYRGIKSVCVYGGGDRKAQVKVVTQGVQIVIATPGRLNDLIESGCIAVESITYLVLDEADRMLDMGFEPQIRKILLDVRPDRQTVMTSATWPPGVRRLASNYMKD---PITVSIGSLDLA-AVHSVTQKIFVVESEEEKDDRLLDFFNNMTPEDKAIIFMSKKAKVDDYSSSLCLAGVDCQSIHGGRDQMDREQALLDFKLGHVRILIATDVASRGIDVEDISHVINFDFPNSMEEYVHRIGRSGRAG 330
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000011189 (supercontig:LSalAtl2s:LSalAtl2s760:470421:474651:1 gene:EMLSAG00000011189 transcript:EMLSAT00000011189 description:"maker-LSalAtl2s760-augustus-gene-3.33") HSP 1 Score: 232.261 bits (591), Expect = 4.346e-69 Identity = 136/343 (39.65%), Postives = 191/343 (55.69%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELR-GKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKE---QAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGR 341 F+ G D ILK K QG+ PT IQ Q P+ LSG +++ A TG+GKT ++LP + ++ L G LVLAPTRELA Q++ + + + S ++GG PQ++ L G +I++ATPGRL+D+ + LV+DEADRMLDMGF I KII+++ RQ L++SAT +VR F D V + I A T A I Q + + K L+ L++E + ++ LIF+E K A +L + + A IHGD+ Q R+ VL +FK G L AT VAARG+D+ + V+NYD P +DYIHRIGRTGR Sbjct: 117 FTEAGFPDYILKEFKRQGFERPTAIQSQGWPIALSGSNMVGIAMTGSGKTCGYLLPGIIHVNNQPYLEEGDGPIVLVLAPTRELAQQIQEVASEFGRTSRIKSTCIFGGAPKGPQLRDLERGCEIVIATPGRLIDILEMGKINMRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRRLAEDFLDDYVH---INIGAA-TLHANHNILQIVDVCEDFQKEEKLARLLEEIGCEPHNKILIFVETKRKADELTRLMRRDGYPAMCIHGDKQQKERDWVLGEFKHGATTILXATDVAARGLDVDDVKFVINYDYPNNSEDYIHRIGRTGR 455
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000011452 (supercontig:LSalAtl2s:LSalAtl2s790:154718:161369:1 gene:EMLSAG00000011452 transcript:EMLSAT00000011452 description:"maker-LSalAtl2s790-augustus-gene-1.30") HSP 1 Score: 225.713 bits (574), Expect = 5.577e-67 Identity = 129/351 (36.75%), Postives = 194/351 (55.27%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPIL-EMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTK-------KAAPGIDQWLITVDKD--TKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 F + G + +LK+++ +T PTPIQ IPV LSG+D I A+TG+GKTA F+ PI+ + + L G+ AL+L PTRELA+Q+ + + DL+++ YGG Q + G +I +ATPGR++D+ + + LV+DEADRM DMGF + I D + RQ LLFSAT KV ++A ++ P K +A+ + Q + ++K +L +L++ + LIF+ KK + +L L ++ E + IHGD +Q VR +++ FK + LVAT VAARG+DI + V+NYD+ D + HRIGRTGRAG Sbjct: 278 FGHFGFDEVLLKSIRKSEFTQPTPIQSIGIPVCLSGRDAIGIAKTGSGKTATFLWPIIIHIQHQRPLLNGEGPIALILVPTRELALQIYTEAKKFGKVYDLNAVCAYGGGSKWEQSKCFESGAEIAIATPGRMIDMIKMKVTNLQRVTYLVLDEADRMFDMGFEAQVRSICDHVRPDRQTLLFSATFK------------KKVEKLARDVLTDPIKVVQGSIGEASEDVTQIVKVLEKGGYKWEWVLQNLVEFTSAGSVLIFVTKKLNCEELAQNLKLKEFECELIHGDLNQHVRNEIIYKFKKKQFPILVATDVAARGLDIPHIRTVLNYDIARDIDTHTHRIGRTGRAG 616
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000011390 (supercontig:LSalAtl2s:LSalAtl2s787:174367:180499:1 gene:EMLSAG00000011390 transcript:EMLSAT00000011390 description:"augustus_masked-LSalAtl2s787-processed-gene-0.30") HSP 1 Score: 223.016 bits (567), Expect = 2.294e-65 Identity = 127/349 (36.39%), Postives = 198/349 (56.73%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELR-GKSVRALVLAPTRELAIQVEANVAAYAEHLD-LSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDL---AYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQ-ALIFIEKKHSAAKLVSQLAKRD-IEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGT 344 +++ G+ IL +K GY PTPIQ QAIP+I+SG+D+I A+TG+GKT AF+LP+ + EL G A+++ PTREL +Q+ + +++ + S+ VYGG Q+ L G +I+V TPGR++D+ R + +V+DEADRM DMGF + +IID +Q ++FSAT + ++ VE++ IDQ + ++++ K L L+ +++ + +IF++K+ A L+ L S+HG Q R+ ++ +FK+GK+K LVAT VAARG+D+ +L VVNYD P +DY+HR GRTGRAG Sbjct: 224 WTHAGVSQRILDLLKRNGYEKPTPIQTQAIPIIMSGRDMIGIAKTGSGKTLAFLLPLFRHIMAQPELEEGDGPIAIIMTPTRELCMQIGKEIKKFSKAIKGARSVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNCRRITYVVLDEADRMFDMGFEPQVSRIIDNCRPDKQMVMFSATFPRQMEALAR-----RILCKPVEVTVGGRSVVCKDIDQSVYVLEEEHKFLKLLELLGQRSSEGLIIIFVDKQEHADSLLKDLMSASYTSCASLHGGVDQYDRDSIITNFKNGKVKILVATSVAARGLDVKELVLVVNYDCPNHYEDYVHRCGRTGRAGN 567
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000000846 (supercontig:LSalAtl2s:LSalAtl2s1142:195200:196664:-1 gene:EMLSAG00000000846 transcript:EMLSAT00000000846 description:"augustus_masked-LSalAtl2s1142-processed-gene-1.9") HSP 1 Score: 210.69 bits (535), Expect = 9.311e-64 Identity = 130/344 (37.79%), Postives = 193/344 (56.10%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLD-LAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLP--TARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 FS+LGL + + +A ++ G+ TP+ IQK+AIPV L+G+D+I A+TG+GKTAAF LP+L+ +K + ALVL PTRELA Q+ + + + + + GG+D Q L + I++ATPGRL+D + + L+ L++DEADR+L+M F ++DKI+ LP R+N+LFSATM V + S + VE+S+ + + Q+ + + K L H+I E A + +IF KL L A ++G SQ R L FK+ L+AT VA+RG+DI + V+NYD+P DYIHR+GRT RAG Sbjct: 26 FSDLGLTEVLCEACESLGWKTPSKIQKEAIPVALTGRDIIGLAETGSGKTAAFALPVLQSLLEKPQ----RFFALVLTPTRELAYQISEQFEKLGKSIGVKCVVLVGGMDMVSQALVLGKKPHIIIATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKILSALPRGEGRKNMLFSATMTKKVAKLQRA---SLRDPVRVEVSSK--YQTVDKLLQYYLFIPLKYKEMYLVHIINELAGNSFIIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKNKSRSILIATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAG 360
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000007141 (supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1 gene:EMLSAG00000007141 transcript:EMLSAT00000007141 description:"maker-LSalAtl2s402-augustus-gene-4.12") HSP 1 Score: 207.608 bits (527), Expect = 2.967e-63 Identity = 117/342 (34.21%), Postives = 192/342 (56.14%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDT-KSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 F ++GL + +L+ + A G+ P+ IQ+++I IL G+D+IA AQ+GTGKTA F + IL+ + + + LVL+PTRELA+Q++ + A +++++ A GG + +++L G ++ TPGR+ D+ +R + +++LV+DEAD ML+ GF I + LP Q L SAT+ ++ E S F + I + G Q+ + V+++ K L L QA+IF K L ++ + + S+HGD Q R+ ++ +F+SG+ + L+ T V ARGID+ ++S V+NYDLP + YIHRIGR+GR G Sbjct: 30 FDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSI----DTTMRETQCLVLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIALISATLPHEILEMTSKFMAD-----PIRILVKRDELTLEGXKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 362
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000008048 (supercontig:LSalAtl2s:LSalAtl2s479:213954:217803:1 gene:EMLSAG00000008048 transcript:EMLSAT00000008048 description:"maker-LSalAtl2s479-augustus-gene-2.18") HSP 1 Score: 215.312 bits (547), Expect = 3.370e-63 Identity = 129/366 (35.25%), Postives = 196/366 (53.55%), Query Frame = 0 Query: 8 LCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKD-----KGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTA-------------------------RQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 L IL+ ++ GYT PTPIQ+QAIP+ L +D+I A+TG+GKT AF+LP+L + + E + + A+++APTRELA Q+E + L + ++AV GG+ E Q +L G +I++ATPGRL+D+ R + +V+DEADRM+DMGF D+ KI+D +P RQ ++F+ATM V + + + + + P ++ ++Q + + ++ K L ++ +IF+ +K A KL L K A ++HG + Q RE L+ K+G LVAT VA RGIDI +S V+NYD+ + Y HRIGRTGRAG Sbjct: 331 LSPEILEIIEKVGYTEPTPIQRQAIPIGLQNRDIIGVAETGSGKTCAFLLPLLVWIQSLPKTTRMEDQDQGPYAIIMAPTRELAQQIEEECNTFGGPLGIXTVAVIGGLSREDQGFKLRLGCEIVIATPGRLIDVLENRYLVLSRCTYIVLDEADRMIDMGFEPDVQKILDHMPVTNAKPDNDEAENEAALLENIRSKNKYRQTVMFTATMPPAVERLARTYL-RRPAVVYIGSIGRPVER----VEQVVYMMKENDKRNKLISILNNGIEPPIIIFVNQKKGADKLAQGLEKMGYNAATLHGGKGQEQREYALSGLKAGNKDILVATDVAGRGIDIKNVSLVINYDMAKSIEPYTHRIGRTGRAG 691
BLAST of rna helicase vs. SwissProt
Match: gi|32363412|sp|Q9HXE5.1|RHLB_PSEAE (RecName: Full=ATP-dependent RNA helicase RhlB >gi|122261039|sp|Q02S21.1|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase RhlB >gi|226739542|sp|B7UUT0.1|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase RhlB) HSP 1 Score: 248.054 bits (632), Expect = 1.894e-77 Identity = 148/366 (40.44%), Postives = 208/366 (56.83%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPI----LEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRL-VEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTA--RQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGIDKGFGAARD 361 F + L ++ A+ G+ TPIQ Q + L G+D I AQTGTGKTAAF++ I L+ K G+ RAL++APTREL +Q+ + AA ++ L+ + GG+D + Q+++L DILVATPGRLLD + V+ D +EV+V+DEADRMLDMGF + +II + P RQ LLFSAT DDV ++ V VEI P A+ ++Q + V K LL +L+ + W++ ++F +K ++ +L K I A + GD Q R + L F+ GK++ LVAT VA RGI I +S V+N+ LP PDDY+HRIGRTGRAG +SG F D Sbjct: 11 FHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEP-RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWT---VDPAIVEIE--PENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAG-----ASGTSISFAGEDD 365
BLAST of rna helicase vs. SwissProt
Match: gi|8928554|sp|P33906.3|DEAD_KLEPN (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A) HSP 1 Score: 253.832 bits (647), Expect = 4.586e-77 Identity = 140/342 (40.94%), Postives = 211/342 (61.70%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHL-DLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 F++LGL PIL+A+ GY P+PIQ + IP +L G+D++ AQTG+GKTAAF LP+L ELR + LVLAPTRELA+QV + +++H+ ++ +A+YGG + Q++ L +G I+V TPGRLLD + + +L LV+DEAD ML MGF D++ I+ ++P Q LFSATM + +R F + E+ ++ S T P I Q T K+ L ++ + +D A+IF+ K++ ++ L + + +++GD +QA+RE+ L K G+L L+AT VAARG+D+ ++S VVNYD+P + Y+HRIGRTGRAG Sbjct: 8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDP--ELRAPQI--LVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFM-KEPQEVRIQSSVT----TRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAG 340
BLAST of rna helicase vs. SwissProt
Match: gi|442570183|sp|Q1DJF0.2|DED1_COCIM (RecName: Full=ATP-dependent RNA helicase DED1) HSP 1 Score: 254.218 bits (648), Expect = 6.864e-77 Identity = 151/382 (39.53%), Postives = 215/382 (56.28%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPIL-EMFKDK--------------GELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKII---DRLP-TARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGIDKGF-GAARDILE 364 F+N L D ++ +K Y TPTP+QK +IP+++ G+DL+A AQTG+GKT F+ PIL + FK+ G R +L+LAPTREL Q+ +A + VYGG D Q++++ G D+LVATPGRL+DL + + ++ LV+DEADRMLDMGF I +I+ D P RQ L+FSAT D++ F V + +T + I Q + V+ K ++L ++ LIF+E K A L L ++ A +IHGDR+Q RE+ L F++G+ LVAT VAARG+DI ++ VVNYDLP DDY+HRIGRTGRAG L ++ ++G G RD++E Sbjct: 183 FTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGST-----SENITQKVEYVEDADKRSVLLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLSTAFFNRGNRGVVRDLIE 559
BLAST of rna helicase vs. SwissProt
Match: gi|338818050|sp|P0CQ77.1|DBP2_CRYNB (RecName: Full=ATP-dependent RNA helicase DBP2-A >gi|338818051|sp|P0CQ76.1|DBP2_CRYNJ RecName: Full=ATP-dependent RNA helicase DBP2-A) HSP 1 Score: 250.751 bits (639), Expect = 9.129e-77 Identity = 142/343 (41.40%), Postives = 197/343 (57.43%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELR-GKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIK-EQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 F G D I+ ++ G+T P+ IQ QA P+ LSG+DL+A A+TG+GKT +F LP + + L G L+LAPTRELA+Q++ + + + + A+YGG PQ++ L GV+I VATPGRL+D+ + LV+DEADRMLDMGF I KI+ ++ RQ LLFSAT +V+ F + + T A ++ + D D +S LLSHL K Q + LIF+ K A L L A +IHGD+ QA R+ VLA+FKSG+ ++AT VA+RG+D+ + V+NYD P +DYIHRIGRTGRAG Sbjct: 112 FEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVE---VCTDFDKRSKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAG 451
BLAST of rna helicase vs. SwissProt
Match: gi|75287517|sp|Q5VQL1.1|RH14_ORYSJ (RecName: Full=DEAD-box ATP-dependent RNA helicase 14) HSP 1 Score: 254.603 bits (649), Expect = 1.029e-76 Identity = 142/344 (41.28%), Postives = 201/344 (58.43%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQ-AWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 M F + G IL+ V+ G++ PTPIQ Q+ P+ L +D++A A+TG+GKT +++P + K LVL+PTRELA Q++ + +SS+ +YGG PQ++ L G DI+VATPGRL D+ R V ++ LV+DEADRMLDMGF I KI+ ++ RQ L+F+AT +VR+ SD + + V I T A I Q++ + KS L +++ Q + +IF K +L LA R A +IHGD+SQA R+ VL++F+SG+ LVAT VAARG+DI + VVNYD P +DY+HRIGRTGRAG Sbjct: 180 MTFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKIA---SDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCSTKRMCDQLARNLA-RQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAG 519
BLAST of rna helicase vs. nr
Match: gi|933779692|ref|WP_054340761.1| (DEAD/DEAH box helicase [Neptunomonas antarctica] >gi|1131932376|emb|SIS90452.1| Superfamily II DNA and RNA helicase [Neptunomonas antarctica]) HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0 Identity = 278/350 (79.43%), Postives = 310/350 (88.57%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349 M FSNLGLC+PIL+A++ GYTTPTPIQKQAIP+ILSGKDLIATAQTGTGKTAAFVLPILE+F + LRGK +RAL+L PTRELA+QV ANV AY++HL+LSSLAVYGGVDSE Q QRL+EGVDILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGF DI KIIDRLP ARQNLLFSATM DDVR FSDSK S AVEIS +P AP IDQWLITVDKDTKSALLSHLI +Q W+QALIFIEKKH AAKLV+QLAKR IEAD+IHGD+SQA+REK+LADFKSGKLKYLVATGVAARG+DIG LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S Sbjct: 1 MTFSNLGLCNPILQAIEDSGYTTPTPIQKQAIPIILSGKDLIATAQTGTGKTAAFVLPILEIFNKERTLRGKRIRALILTPTRELAVQVAANVTAYSKHLNLSSLAVYGGVDSEAQKQRLIEGVDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMVDMGFVDDIYKIIDRLPKARQNLLFSATMTDDVRALAFEFSDSKTSNPAVEISTSPISTTAPTIDQWLITVDKDTKSALLSHLINDQQWNQALIFIEKKHGAAKLVAQLAKRGIEADAIHGDKSQAMREKILADFKSGKLKYLVATGVAARGLDIGDLSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350
BLAST of rna helicase vs. nr
Match: gi|738204754|ref|WP_036160671.1| (DEAD/DEAH box helicase [Marinomonas ushuaiensis] >gi|575465316|gb|ETX11047.1| RNA helicase [Marinomonas ushuaiensis DSM 15871]) HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0 Identity = 276/350 (78.86%), Postives = 307/350 (87.71%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349 M FS LGLC PI +A+K GYTTPTPIQKQAIPVI+SGKDLIATAQTGTGKTAAFVLPILE F LRGK VRAL+L PTREL++QVEANVA Y++H++L+S+A+YGGVD+E Q QRL+EGVDILVATPGRLLDL +QRA++FD+LEVLV+DEADRM+DMGF DI+KIIDRLP ARQNLLFSATM DDVR FSD K S+ AVEIS +P KAAP I+QWLITVDKDTKSALLSHLIKEQ WDQALIFIEKKH AAKLV QLAKR IEADSIHGDRSQA+REK+L DFKSGKLKYLVATGVAARGIDIG LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S Sbjct: 1 MLFSKLGLCSPIAQAIKELGYTTPTPIQKQAIPVIMSGKDLIATAQTGTGKTAAFVLPILERFSKVQTLRGKRVRALILTPTRELSVQVEANVALYSKHMNLTSMAIYGGVDTETQKQRLIEGVDILVATPGRLLDLIHQRALHFDKLEVLVLDEADRMVDMGFVGDINKIIDRLPEARQNLLFSATMTDDVRALSYGFSDDKASDQAVEISISPKTKAAPNINQWLITVDKDTKSALLSHLIKEQKWDQALIFIEKKHGAAKLVDQLAKRGIEADSIHGDRSQAMREKILGDFKSGKLKYLVATGVAARGIDIGDLSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350
BLAST of rna helicase vs. nr
Match: gi|655019771|ref|WP_028468725.1| (DEAD/DEAH box helicase [Neptunomonas japonica]) HSP 1 Score: 558.525 bits (1438), Expect = 0.000e+0 Identity = 272/350 (77.71%), Postives = 307/350 (87.71%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349 MPF NLGLC PI++A++ GYT PTPIQKQAIP+ILSGKDLIATAQTGTGKTAAFVLPILE F + LRGK +RAL+L PTRELA+QV ANV Y++HL+LSSLAVYGGVDSE Q QRL+EG+DILVATPGRLLDL++QRA++FDELEVLV+DEADRM+DMGF DI KII+RLP ARQNLLFSATM DDVR FSDSK+S AVEIS +P P I+QWLITVDKDTKSALLSHLI +Q WDQALIFIEKKH AAKLV+QLAKR IEAD+IHGD+SQA+REK+LADFKSGKLKYLVATGVAARG+DIG+LSRVVNYDLPF+P++YIHRIGRTGRAG T E VS Sbjct: 1 MPFLNLGLCKPIVQAIEELGYTAPTPIQKQAIPIILSGKDLIATAQTGTGKTAAFVLPILEAFNKERTLRGKRIRALILTPTRELAVQVAANVEQYSKHLNLSSLAVYGGVDSEVQKQRLIEGIDILVATPGRLLDLSHQRALHFDELEVLVLDEADRMVDMGFVDDIYKIIERLPKARQNLLFSATMTDDVRSIAYDFSDSKMSNPAVEISTSPKASTTPNINQWLITVDKDTKSALLSHLINDQQWDQALIFIEKKHGAAKLVAQLAKRGIEADAIHGDKSQAMREKILADFKSGKLKYLVATGVAARGLDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGSTGEAVS 350
BLAST of rna helicase vs. nr
Match: gi|567429906|ref|WP_024023981.1| (RNA helicase [Marinomonas profundimaris] >gi|566041097|gb|ETI60484.1| RNA helicase [Marinomonas profundimaris]) HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0 Identity = 267/343 (77.84%), Postives = 301/343 (87.76%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 MPFS LGL PI+KA+K GY PTP+Q+QAIP+ILSGKDLIATAQTGTGKTAAFVLP LE F G LRGK +RAL+L PTRELA+QVEANVA Y++HL L+S+AVYGGVD E Q +RL+EGVDILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGF ++ KI+DRLP RQNLLFSATM D VR + FSDSKVS+ A EI+ +P K AP I QWLITVDKDTKSALLSHLIKEQ WDQALIFIEKKH AAKLV+QLAKR IEADSIHGDRSQA+REK+LADFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++Y+HRIGRTGRAG Sbjct: 1 MPFSKLGLSSPIVKAIKELGYKKPTPVQEQAIPIILSGKDLIATAQTGTGKTAAFVLPTLERFNKVGTLRGKRIRALILTPTRELAVQVEANVALYSKHLKLTSMAVYGGVDMEAQKERLIEGVDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMIDMGFAENLYKILDRLPERRQNLLFSATMTDSVRALANEFSDSKVSDQAEEITISPKSKTAPNIKQWLITVDKDTKSALLSHLIKEQEWDQALIFIEKKHGAAKLVAQLAKRGIEADSIHGDRSQAMREKILADFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYVHRIGRTGRAG 343
BLAST of rna helicase vs. nr
Match: gi|1270405578|gb|PHR99071.1| (DEAD/DEAH box helicase [Oceanobacter sp.]) HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0 Identity = 267/350 (76.29%), Postives = 308/350 (88.00%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349 MPFSNLGL PIL+A+ A GY+TPTPIQ QAIPVILSGKDLIATAQTGTGKTAAFVLPILE+F + LRGK +RAL+L PTRELA+QV NVA Y++HL+LSS+AVYGGVD++ Q QRL+ GVDILVATPGRLLDLA+QRA++FDELE+LV+DEADRM+DMGF DI+KII+RLP RQNLLFSAT+ DDV F++SK+ E+A EI+ +P AAP I QWLITVDKDTKSALLSHLIKEQ WDQALIFIEKKH+AAKLV QLAKRDI+AD+IHGD+SQA+RE++LADFKSGKLKYLVATGVAARGIDIG LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S Sbjct: 1 MPFSNLGLSAPILRAIDALGYSTPTPIQNQAIPVILSGKDLIATAQTGTGKTAAFVLPILELFNKERTLRGKRIRALILTPTRELAVQVTNNVAQYSQHLNLSSMAVYGGVDTDAQKQRLIAGVDILVATPGRLLDLAHQRALHFDELEILVLDEADRMVDMGFLGDINKIIERLPPTRQNLLFSATVTDDVLAISDSFANSKMGELAEEITISPHSTAAPSIKQWLITVDKDTKSALLSHLIKEQEWDQALIFIEKKHAAAKLVDQLAKRDIKADAIHGDKSQAMREQILADFKSGKLKYLVATGVAARGIDIGSLSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350
BLAST of rna helicase vs. nr
Match: gi|1182634235|gb|ORU94077.1| (DEAD/DEAH box helicase [Cycloclasticus sp. symbiont of Bathymodiolus heckerae]) HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0 Identity = 268/350 (76.57%), Postives = 305/350 (87.14%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349 M FSNLGL +PIL+A+K GY TPTPIQKQAIP+I+SGKDLIATAQTGTGKTA+FVLPILE+F + +LRGK +RAL+L PTRELA+QV AN+A Y +HL LSS+AVYGG+D+EPQ+QRL+EGVDILVATPGRLL LA+QRA++FDELEVLV+DEADRM+DMGF DI KI DRLP RQNLLFSATM+ +VR FS SK+S+ AVEIS +P AP I QWLITVDKDTKS LLSHLI EQ WDQALIFIEKKH AAKLV+QLAKR IEAD IHGDRSQA+REK+LADFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S Sbjct: 1 MSFSNLGLSNPILQAIKDLGYITPTPIQKQAIPLIISGKDLIATAQTGTGKTASFVLPILEIFNKERQLRGKRIRALILTPTRELAVQVAANIAEYGKHLSLSSMAVYGGIDAEPQVQRLIEGVDILVATPGRLLHLAHQRALHFDELEVLVLDEADRMVDMGFANDIYKITDRLPETRQNLLFSATMSHEVRALADDFSYSKMSKPAVEISISPEATTAPTIKQWLITVDKDTKSTLLSHLINEQKWDQALIFIEKKHGAAKLVAQLAKRGIEADCIHGDRSQAMREKILADFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350
BLAST of rna helicase vs. nr
Match: gi|1000090003|gb|KXJ57311.1| (DEAD/DEAH box helicase [Neptuniibacter sp. Phe_28]) HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0 Identity = 268/343 (78.13%), Postives = 300/343 (87.46%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 MPFS LGLC+P+L A+ GYT PTPIQKQAIP+IL+GKDLIATAQTGTGKTAAFVLPILE + LRGK +R L+L PTRELA+QV NVA Y++HL+LSSLAVYGGVDSEPQ QRL+ GVDILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGF DI KII+RLPT RQNLLFSATM+D VR FSDSKVS+ AVEIS +P K A I+QWLITVDKDTKSALLSHLIK+Q WDQALIFIEKKH AAKLV QLAKR I A++IHGDRSQA+REK+L DFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG Sbjct: 1 MPFSTLGLCNPLLLAINDLGYTAPTPIQKQAIPLILAGKDLIATAQTGTGKTAAFVLPILERLNKERTLRGKRIRVLILTPTRELAVQVAGNVAEYSKHLNLSSLAVYGGVDSEPQKQRLIAGVDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMVDMGFADDIHKIIERLPTERQNLLFSATMSDGVRALADDFSDSKVSKPAVEISVSPKTKTAATINQWLITVDKDTKSALLSHLIKDQQWDQALIFIEKKHGAAKLVDQLAKRGIVAEAIHGDRSQAMREKILEDFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAG 343
BLAST of rna helicase vs. nr
Match: gi|1056553454|ref|WP_067985833.1| (DEAD/DEAH box helicase [Neptuniibacter pectenicola]) HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0 Identity = 267/343 (77.84%), Postives = 299/343 (87.17%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 MPFS LGLC+P+L A+ GYT PTPIQKQAIP+IL+GKDLIATAQTGTGKTAAFVLPILE + LRGK +R L+L PTRELA+QV NVA Y++HL+LSSLAVYGGVDSEPQ QRL+ GVDILVATPGRLLDL +QRA++FDELEVLV+DEADRM+DMGF DI KII+RLPT RQNLLFSATM+D VR FSDSKVS+ AVEIS +P K A I+QWLITVDKDTKSALLSHLIK+Q WDQALIFIEKKH AAKLV QLAKR I A++IHGDRSQA+REK+L DFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG Sbjct: 1 MPFSTLGLCNPLLLAINDLGYTAPTPIQKQAIPLILAGKDLIATAQTGTGKTAAFVLPILERLNKERTLRGKRIRVLILTPTRELAVQVAGNVAEYSKHLNLSSLAVYGGVDSEPQKQRLIAGVDILVATPGRLLDLTHQRALHFDELEVLVLDEADRMVDMGFADDIHKIIERLPTERQNLLFSATMSDGVRALADDFSDSKVSKPAVEISVSPKTKTAATINQWLITVDKDTKSALLSHLIKDQQWDQALIFIEKKHGAAKLVDQLAKRGIVAEAIHGDRSQAMREKILEDFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAG 343
BLAST of rna helicase vs. nr
Match: gi|1198998532|ref|WP_087107642.1| (ATP-dependent helicase [Halomonas sp. JB380] >gi|1145422377|emb|SJN12096.1| ATP-dependent RNA helicase VC1407 [Halomonas sp. JB380]) HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0 Identity = 261/343 (76.09%), Postives = 299/343 (87.17%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 M F+ LGL P+++A+ GY TPTPIQ+QAIP ILSG DLIATAQTGTGKTAAFVLP+LE F G LRGK +RAL+L PTRELA+QVEA+VA YA+HL L+S+AVYGGVDSEPQ QRL+EG+DILVATPGRLLDLA+QRA++FDEL +V+DEADRM+DMGF DI+KII+RLP RQNLLFSATMN DVR FSDSK++++A EIS +P +AA I QWLITVDKDTKSALLSHLI EQAWDQALIFIEKKH AAKLV QLAKR I+ADSIHGDRSQA+REK+LA FKSG+LKYLVATGVAARG+DIG+LSRVVNYDLPFQP++YIHRIGRTGRAG Sbjct: 1 MSFAKLGLSSPLVQAITELGYKTPTPIQEQAIPAILSGNDLIATAQTGTGKTAAFVLPLLERFSTAGTLRGKRIRALILVPTRELAVQVEASVAQYAKHLHLTSMAVYGGVDSEPQKQRLIEGIDILVATPGRLLDLAHQRALHFDELNAMVLDEADRMVDMGFVDDINKIIERLPENRQNLLFSATMNGDVRALAYGFSDSKMTDLASEISISPNIRAAANIKQWLITVDKDTKSALLSHLINEQAWDQALIFIEKKHGAAKLVDQLAKRGIKADSIHGDRSQAMREKILAQFKSGELKYLVATGVAARGLDIGELSRVVNYDLPFQPEEYIHRIGRTGRAG 343
BLAST of rna helicase vs. nr
Match: gi|518449832|ref|WP_019620039.1| (hypothetical protein [Amphritea japonica]) HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0 Identity = 259/343 (75.51%), Postives = 303/343 (88.34%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 M F NLGL +PI++A++ GY PTPIQ QAIP++LSGKDLIATAQTGTGKTAAFVLPILE F + LRGK +RAL+L PTRELA+QV A+VA Y+ HL+L+S+AVYGGV++EPQ +RL+EG+DILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGFG +I KIIDRLP ARQNLLFSATM+DDVR FSDSK+S AVE+S +P +A I+QWLITVDKDTKSALLSHLI EQ WDQALIFIEKKH+AAKLV QLAKR I+A++IHGDRSQ +REK+LADFKSGKL+YLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG Sbjct: 1 MTFLNLGLSNPIVQAIEDSGYNAPTPIQTQAIPIVLSGKDLIATAQTGTGKTAAFVLPILENFNQERTLRGKRIRALILTPTRELAVQVAASVAMYSTHLNLTSMAVYGGVNAEPQKERLIEGIDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMVDMGFGEEIRKIIDRLPDARQNLLFSATMSDDVRALAEGFSDSKMSTPAVELSISPKATSASTINQWLITVDKDTKSALLSHLINEQQWDQALIFIEKKHAAAKLVVQLAKRGIKAEAIHGDRSQIMREKILADFKSGKLQYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAG 343 The following BLAST results are available for this feature:
BLAST of rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold2_size2283618:1007362..1012772+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold2_size2283618-processed-gene-10.6 ID=snap_masked-scaffold2_size2283618-processed-gene-10.6|Name=rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=5411bp|location=Sequence derived from alignment at scaffold2_size2283618:1007362..1012772+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'rna helicase' has the following synonyms
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