rna helicase, snap_masked-scaffold2_size2283618-processed-gene-10.6 (gene) Tigriopus kingsejongensis

Overview


Name	rna helicase
Unique Name	snap_masked-scaffold2_size2283618-processed-gene-10.6
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000002581 (supercontig:LSalAtl2s:LSalAtl2s151:1305107:1306803:-1 gene:EMLSAG00000002581 transcript:EMLSAT00000002581 description:"maker-LSalAtl2s151-snap-gene-13.39")

HSP 1 Score: 207.608 bits (527), Expect = 3.236e-62
Identity = 136/392 (34.69%), Postives = 204/392 (52.04%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILE--MFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVS-HFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDK-DTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGIDKGFGAARDILEGLSVLEGSIAEDISKTYDLVQQGLEH 390
            F   G    +++ +K+ G+  PT IQ Q  P+  +GK++IA  +TG+GKT  FVLP L   M       RG     L++APTRELA Q+   V  +A  +  + L   GG   + Q++ L  G +I+VATPGRL+DL     V       +V+DEADRMLDMGF   I KI+ ++   RQ L++SAT   +V+      F  +  + + +  S     K      ++    +K D+   +L  L + ++  + LIF   K    +LV +L   +   D IHGD++QA+R + L  F+SG++  LVAT VA+RG+D+  +  V+NYD P   +DY+HRIGRTGR        S  D+             V +GS A+D+        Q + H
Sbjct:   80 FQETGFPLGLIERIKSHGFEAPTAIQAQGWPIATNGKNIIAIGETGSGKTLGFVLPGLCHLMRXPPRRNRGDGPVVLIIAPTRELAEQIHNVVDGFASKIPTACLV--GGNHKQGQIRDLNRGAEIVVATPGRLIDLMEDGDVDLKRCSYMVLDEADRMLDMGFEPQIRKIMRQVRPDRQLLMWSATWPSEVQSLAHDFFGGTDYAHVNIGSSELXANKLIMQDFKFCERFEKMDSIKEILESLSEVES-KKVLIFAATKIRVDQLVRKLKYWNFVVDGIHGDKTQAMRTRALDKFRSGRINILVATDVASRGLDVNDIKVVINYDFPNNIEDYVHRIGRTGRCSKEGKSFSFFDE-------------VEDGSKAKDLINVLKEAHQSIPH 455

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000002458 (supercontig:LSalAtl2s:LSalAtl2s1472:18624:24320:1 gene:EMLSAG00000002458 transcript:EMLSAT00000002458 description:"maker-LSalAtl2s1472-snap-gene-0.14")

HSP 1 Score: 215.312 bits (547), Expect = 6.881e-62
Identity = 131/363 (36.09%), Postives = 198/363 (54.55%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVR-----ALVLAPTRELAIQVEANVAAYAEHL------DLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGIDK 354
            F ++    PI+KA+K +G   PT IQ Q IP +LSG+DLI  A TG+GK+  F+LPI+ MF  + E R   V+      L++ P+RELA Q+  ++ +Y  +L      ++ S    GG  S   M  + +GV I+VATPGRL+DL  ++ +  +    L +DEADRM+DMGF  D+  I       RQ LLFSATM   ++ F      + V  I V +       A+  I Q +  V  + K   +  ++K+      LIF E+K     +   L  + + A S+HG + Q  R K + DF++ +   LVAT VA++G+D   +  V+NYD+P   ++Y+HRIGRTGR       ++ I+K
Sbjct:  975 FQDMKFPLPIIKALKEKGIERPTSIQMQGIPAVLSGRDLIGIAYTGSGKSLVFILPIV-MFCLEQEKRLPFVQNEGPYGLIVVPSRELAKQIHESIYSYFSYLKKNSFPEIRSCLAIGGTSSSETMDVVKKGVHIVVATPGRLMDLLNKKMLNLEICRYLCLDEADRMIDMGFEEDVRTIFSYFKGQRQTLLFSATMPKKIQNFAQ---SALVKPITVNVGRAGA--ASMNIIQEVEYVKSEAKVVHIIEMLKKTP-PPVLIFAERKQDVDAIHEYLLLKGVSAVSVHGGKDQDDRSKAVTDFRNLRKDVLVATDVASKGLDFPCIQHVINYDMPDDIENYVHRIGRTGRGNFKGYATTMINK 1330

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000012967 (supercontig:LSalAtl2s:LSalAtl2s98:1266421:1269115:1 gene:EMLSAG00000012967 transcript:EMLSAT00000012967 description:"maker-LSalAtl2s98-augustus-gene-12.20")

HSP 1 Score: 209.534 bits (532), Expect = 5.988e-61
Identity = 120/351 (34.19%), Postives = 193/351 (54.99%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFV-SHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKE--QAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSS 350
            F ++GL   + + ++ +GY  PTPIQ++ IP+IL G+D++  A+TG+GKT AF++P+LE        RGK  RA++L+PTREL++Q        A+   L ++++ GG   E Q   +    D+L+ATPGR + L  +  +  D ++ +V DEADR+ ++GFG  + +I+ RL   RQ LLFSAT+   + EF  +  +D  +  + V+     T   A       I+   + K ALL H++++     +Q ++F+  +H    +   L   +I    I+     + R+   A F S +   L+ T +AARGIDI  L  V+NY  P +   +IHR+GR  RAG   L  S
Sbjct:   33 FQSMGLSREVFRGIQKKGYKVPTPIQRKTIPLILEGRDVVGMARTGSGKTGAFLIPLLEKLCSGN--RGKP-RAMILSPTRELSLQTLRFFKELAKFSGLKAMSILGGESMEKQFAGMHNNPDVLIATPGRFVHLCVEMNLRLDAIQYVVFDEADRLFELGFGEQLKEILGRLSDDRQTLLFSATLPKLLVEFAKAGLNDPTLVRLDVDTKIPETLSLA------FISCRDEGKPALLVHILQKLIAKEEQTIVFLATRHHVEYIHLLLDSAEISNTYIYSQLDPSARKINTAKFTSNQCSVLLVTDLAARGIDIPLLDNVINYHFPAKSKLFIHRVGRVARAGRSGLAIS 374

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000000395 (supercontig:LSalAtl2s:LSalAtl2s1063:103535:105763:1 gene:EMLSAG00000000395 transcript:EMLSAT00000000395 description:"augustus_masked-LSalAtl2s1063-processed-gene-0.12")

HSP 1 Score: 204.527 bits (519), Expect = 2.849e-59
Identity = 126/347 (36.31%), Postives = 186/347 (53.60%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILE--MFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVY-FDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKS---ALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            F  + L  P+LKA++   Y  PTPIQ   IPV L+G+D+   A TGTGKTA ++LPILE  +F+    +     R +VL PTREL +QV       ++   +      GG+D + Q   L +  DI++ATPGRL+D       +  + +EVL++DEADRMLD  F   + +I+      RQ LLFSATM D V +  +           V+I     K  A  + Q  + +  + +S    +L+ L+     D  ++FI+ K    +L+  L+   +    +HG+ SQ  R + L  FK  ++  L+ T VAARG+DI  +  V+NY LP   + YIHR+GRT RAG
Sbjct:  184 FYAMXLSRPLLKAIEXLRYVHPTPIQASTIPVALAGRDVCGCAATGTGKTAXYMLPILERLLFRPNQSI----TRVIVLVPTRELGVQVYQVSKQLSQFTSIDIALSVGGLDLKAQELALRKNPDIVIATPGRLIDHIKNTPTFGLENIEVLILDEADRMLDECFLEQMKEIVKSCSPKRQTLLFSATMTDKVNDLSTM-----ALRKPVKIFVDSNKVVAWNLRQEFVRIRANRESDREGILAALVCRTFRDHTIVFIQTKVQCHRLLILLSLLGVRVGELHGNLSQPQRLESLKKFKEEEIDVLITTDVAARGLDISGVKTVINYTLPTTLEHYIHRVGRTARAG 521

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000000249 (supercontig:LSalAtl2s:LSalAtl2s1036:82728:88820:1 gene:EMLSAG00000000249 transcript:EMLSAT00000000249 description:"maker-LSalAtl2s1036-augustus-gene-0.32")

HSP 1 Score: 197.593 bits (501), Expect = 4.738e-59
Identity = 112/341 (32.84%), Postives = 181/341 (53.08%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            F +  L    L  +  +G+  P+PIQ+ +IPV LSG+D++A A+ GTGKT A+ +PILE      ++    ++ +++ PTRELA+Q        ++H ++  +   GG + +  + R+ E V ++VATPGR+LDL  +        +V+ +DEAD++L   F   +D++I+ LP  RQ LL SAT    V  F+     S      V +    T K   GI Q+   V +  K   L+ L  +   +Q++IF         L  ++ +       IH   +Q  R +V  DF++G  + LV + +  RGIDI  ++ V+N+D P   + Y+HRIGR+GR G
Sbjct:   53 FEDFCLKRETLMGIFEKGWEKPSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPILEQIDPSNDV----IQGMIIVPTRELALQTSQICIELSKHRNVKVMVTTGGTNLKEDIMRIYEKVHLVVATPGRILDLIEKGVAKVMNCKVICLDEADKLLGHDFKGMLDRLIEHLPERRQILLXSATFPLTVEYFMKRHMKSPYE---VNLMDELTLK---GITQYYAFVQERQKVHCLNTLFTKLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMAQTHRNRVFHDFRAGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRFG 383

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000006912 (supercontig:LSalAtl2s:LSalAtl2s391:287461:291724:1 gene:EMLSAG00000006912 transcript:EMLSAT00000006912 description:"maker-LSalAtl2s391-augustus-gene-3.7")

HSP 1 Score: 187.963 bits (476), Expect = 1.177e-55
Identity = 113/335 (33.73%), Postives = 181/335 (54.03%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDT-KSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRI 336
            F ++ L + +L+ + + G+  P+ IQ++AI   +  +D IA AQ+GTGKTA F + IL+    K ++     +AL+LAPTRELA Q++  V +  + L  +  A  GG      ++ L  G  I+V TPGR+ D+  +  +  + +++ V+DEAD ML  GF   I  +   L    Q +L SATM DDV +    F         + I     +    GI Q+ + V+K+  K + L  L +     QA+IF   +     L  ++  +     S+HG+ SQ  RE ++ +F+SG  + L+ T + ARGID+ ++S V+NYDLP   ++YIHRI
Sbjct:   42 FDDMNLKEDLLRGIYSFGFEKPSAIQQRAIVPCIKTRDAIAQAQSGTGKTATFSIAILQ----KIDISMNRTQALILAPTRELAQQIQKVVLSLGDFLKATCYACIGGRSISSDIRALEHGPHIVVGTPGRVFDMITREHLRTENIKMFVLDEADEMLSRGFKEQIYDVFRHLNQDIQVVLMSATMPDDVLDVTKRFMRD-----PIRILVRKEELTLEGILQFYVFVEKEEWKLSTLCDLYETLTITQAVIFCNTRRKVCWLTEKMGLKHFTVSSMHGEMSQEEREVIMREFRSGSSRVLITTDLLARGIDVQQISLVINYDLPVNKENYIHRI 367

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000002659 (supercontig:LSalAtl2s:LSalAtl2s153:555306:559625:1 gene:EMLSAG00000002659 transcript:EMLSAT00000002659 description:"maker-LSalAtl2s153-augustus-gene-5.7")

HSP 1 Score: 187.193 bits (474), Expect = 1.046e-53
Identity = 108/336 (32.14%), Postives = 174/336 (51.79%), Query Frame = 0

Query:    8 LCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLD-LAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRA 342
            +CD  L  ++  G++  T IQ Q IP +L G+DL+  A+TG+GKT +F++P +E+      +       ++++PTREL++Q    +    ++   +   V GG +   + Q+L +G++I+VATPGRLLD L   +   +  L+ L+IDEADR+LD+GF  ++ KII  LP  RQ +LFSAT      + V      +   I ++ +         G++Q  +    + +  LL   +K+    + ++F     S           D+   SIHG + Q  R      F +     L+ T VAARG+DI  +  +V YD    P +YIHR+GRT R 
Sbjct:  126 ICDNTLNGIQDMGFSQMTEIQAQTIPHLLEGRDLVGAAKTGSGKTLSFLIPAVELIYKLKFMPRNGTGVIIISPTRELSMQTFGVLRELLKYHCHTYGLVMGGANRNTEAQKLNKGINIVVATPGRLLDHLRNTKDFLYKNLQCLIIDEADRILDVGFEEEMKKIIQLLPKKRQTMLFSATTTKKTEDLVKLALKKEPIYIGIDSANDNGAATVSGLEQGYVICPSEKRLLLLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVQSIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPDVDWIVQYDPTDDPKEYIHRVGRTARG 461

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000009885 (supercontig:LSalAtl2s:LSalAtl2s643:195185:200626:1 gene:EMLSAG00000009885 transcript:EMLSAT00000009885 description:"maker-LSalAtl2s643-augustus-gene-2.22")

HSP 1 Score: 172.94 bits (437), Expect = 1.097e-49
Identity = 106/286 (37.06%), Postives = 157/286 (54.90%), Query Frame = 0

Query:  124 VDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDR----LPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGIDKGFGAARDILEGLSVLEGSIAEDISKTYDLVQQGLEHFREHFLADNSSEEKA 405
            VDIL+ATPGRLLDL  + AV  D ++  V+DEADRMLDMGF  ++ +I+        T+RQ L+FSAT   +V+   + F +  V      +    T      + Q    V+K  K   L  ++ +    + L+F+E K +   L S L++ ++   SIHGDR Q+ RE+ LADF+SGK   LV+T VAARG+DI  +  VVNYDLP   D+Y+HR+GRTGR G             G A    +G   ++ ++A ++ K   ++++G     E    DNS ++  
Sbjct:  166 VDILIATPGRLLDLVSKGAVSLDAVQFFVLDEADRMLDMGFLPEVKRIVSEGNMCCKTSRQTLMFSATFPYEVQSCAAEFLNDYVFVTVGIVGGVNTD-----VKQDFYQVEKFKKRQKLKDILDDVGTLKTLVFVETKKNTDFLASWLSENNVPTTSIHGDRLQSQREQALADFRSGKYPVLVSTAVAARGLDIKGVEHVVNYDLPKTVDEYVHRVGRTGRVGNK-----------GKATSFYDGNEPMDRTLAHELLK---VLREGDIEIPEWMQGDNSMDDNG 432

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000007706 (supercontig:LSalAtl2s:LSalAtl2s449:21910:24507:-1 gene:EMLSAG00000007706 transcript:EMLSAT00000007706 description:"maker-LSalAtl2s449-snap-gene-0.33")

HSP 1 Score: 175.637 bits (444), Expect = 1.197e-48
Identity = 119/358 (33.24%), Postives = 180/358 (50.28%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFD--ELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVRE----------FVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKR---DIEADSIHGDRSQAVREKVLADF-KSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGT 344
            F ++ L    LK +K   Y  PT IQK++I +   G D++  A+TG GKT AFV+PILE+   +   +   + ALV+ PTRELA Q+   +    +H + S+  V GG D + + +RL    +I++ TPGRLL    +    FD   L++LV+DEADR LD+GF   ++ I+  LP  RQ LLFSAT    +++          +VS    SK S        TP K     + Q  +  + D K  +L   IK     + L+F++     A+   +L K+    +    ++G   Q  R  +  +F +      L AT +AARG+D  K+  V   D P     Y+HR+GRT R  +
Sbjct:  104 FRDMPLSAYTLKGLKENNYDEPTQIQKESIGLCFRGSDVLGAAKTGCGKTLAFVIPILELLHREKWTKLDGLGALVITPTRELAYQIFETLRKVGKHHEFSAGLVIGGKDLQYETKRL-STCNIVICTPGRLLQHMDENP-QFDPITLQILVLDEADRCLDLGFAETMNAILGNLPKERQTLLFSATQTRSIKDLGRLSLKNPVYVSIHEHSKFS--------TPEK-----LTQNYMVCELDKKMDMLLSFIKSHRKSKTLVFVQ-SCKQARYFQELLKKIRVGVSVLGLYGTLHQLRRMSIYEEFCQEENSMVLFATDIAARGLDFPKVDWVFQLDCPEDGKTYLHRVGRTARHAS 445

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000011335 (supercontig:LSalAtl2s:LSalAtl2s781:205091:212596:-1 gene:EMLSAG00000011335 transcript:EMLSAT00000011335 description:"maker-LSalAtl2s781-augustus-gene-2.34")

HSP 1 Score: 171.785 bits (434), Expect = 5.565e-47
Identity = 116/347 (33.43%), Postives = 175/347 (50.43%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLD--LAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEAD--SIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            +P   LGL   +L+  +  G   PTP+Q+  +  IL G + +  A+TG+GKTAAF LPIL+   +        V ALVL PTRELA Q+        + L++    + GG D   Q   L     IL+ATPGRL D   +   +    ++  LVIDEADR+L+ GF   + +I   +P+ RQ LLF+AT  + +++ +   SD K      E     +      ++Q+ +    D + A L               +   H     VSQ    +I     S+H  + Q  R + L+ F+S   K L+AT VA+RG+DI ++  V+N+++P    DY+HR+GRT RAG
Sbjct:   74 LPMDILGLKPWLLRQCETIGLKAPTPVQQATVSKILKGANGVGIAKTGSGKTAAFALPILDALSEDP----YGVFALVLTPTRELAYQIGDTFKILGKPLNVKVSIIVGGRDMVMQGSELSTSPHILIATPGRLADHLQSITSSKLLKKIRFLVIDEADRLLEGGFDEQLSQIFTAIPSERQTLLFTATHTEALKDLIEVNSD-KQPFFYREGEDDASSLTVNTLEQYYVLTPADFRDAYL---------------VGXDHEMPGGVSQCILYNICFSNVSLHSMKPQRERLQSLSRFRSHLAKILIATDVASRGLDIQQVEYVINHNIPTDAKDYVHRVGRTARAG 400

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BLAST of rna helicase vs. SwissProt
Match: gi|548730|sp|P25888.3|RHLE_ECOLI (RecName: Full=ATP-dependent RNA helicase RhlE)

HSP 1 Score: 357.451 bits (916), Expect = 2.775e-119
Identity = 181/344 (52.62%), Postives = 237/344 (68.90%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILE-MFKDKGELRGK-SVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRA 342
            M F +LGL   IL+AV  QGY  PTPIQ+QAIP +L G+DL+A+AQTGTGKTA F LP+L+ +   +   +G+  VRAL+L PTRELA Q+  NV  Y+++L++ SL V+GGV   PQM +L  GVD+LVATPGRLLDL +Q AV  D++E+LV+DEADRMLDMGF  DI +++ +LP  RQNLLFSAT +DD++         K+    +EI       A+  + Q +  VDK  K  LLSH+I +  W Q L+F   KH A  L  QL K  I + +IHG++SQ  R + LADFKSG ++ LVAT +AARG+DI +L  VVNY+LP  P+DY+HRIGRTGRA
Sbjct:    1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALA-----EKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRA 339

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BLAST of rna helicase vs. SwissProt
Match: gi|81768862|sp|Q8Y8N0.1|CSHA_LISMO (RecName: Full=ATP-dependent RNA helicase CshA)

HSP 1 Score: 269.626 bits (688), Expect = 2.150e-84
Identity = 155/341 (45.45%), Postives = 206/341 (60.41%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            FS  GL + I+K+V   G+   TPIQ++ IP+ L GKDLI  AQTGTGKTAAF LP++     K      +V+AL++APTRELAIQV   +   +    +  LAVYGG D   Q++ L +   I+V TPGR+LD   +R +  D +E LV+DEAD ML+MGF  DI+ I+  +P  RQ LLFSATM D +R     F  S   E+   I     +  A  I+Q+ + V +  K  +LS L+  QA + A++F   K    +L   L  R   A+ IHGD +QA R  VL  FK GK+  LVAT VAARG+DI  ++ V NYD+P  P+ Y+HRIGRTGRAG
Sbjct:    4 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKS----NNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHS--PEL---IRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|75535255|sp|Q9Z6C9.1|CSHA_LACRE (RecName: Full=ATP-dependent RNA helicase CshA; AltName: Full=Autoaggregation-mediating protein)

HSP 1 Score: 265.388 bits (677), Expect = 5.901e-83
Identity = 149/344 (43.31%), Postives = 201/344 (58.43%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREF-VSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            M FS LGL D +LKA+K  GY   TPIQ+Q IP++L GKD+I  AQTGTGKTAAF LPI+E      +    +++A++++PTRELAIQ +  +    +   +    VYGG D   Q++ L +   ILV TPGRL D   +  V  D ++ LV+DEAD ML+MGF  DI+ II   P  RQ LLFSATM  +++   V   SD +   I  +   T        +DQ+ +      K  +++ LI  Q  D  ++F   K    +L   L  R   A  IHGD +Q  R K++  FK+ +L  LVAT VAARG+DI  ++ V NYD+P  PD Y+HRIGRTGRAG
Sbjct:    1 MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENV----DTENPNIQAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDL------VDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAG 334

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|61223743|sp|P0A4D7.1|CSHA_STRPN (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA >gi|61223744|sp|P0A4D8.1|CSHA_STRR6 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA; AltName: Full=Exported protein 9)

HSP 1 Score: 264.618 bits (675), Expect = 2.038e-82
Identity = 149/343 (43.44%), Postives = 206/343 (60.06%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            M F+ L L   +L  ++  G+   +PIQ+Q IP+ L GKD+I  AQTGTGKTAAF LP LE  + +      +++ALV+APTRELA+Q +  +  +     +   +VYGG   E Q++ L  G  I+V TPGRLLDL  ++A+   ++E L++DEAD ML+MGF  DI+ II R+P  RQ LLFSATM D ++     F   K  E  V+I+A         +DQ+ I V +  K   ++ L+     + A++F   K    +L   L  R   A+ IHGD  Q  R +VL DFK+G L  LVAT VAARG+DI  ++ V NYD+P  P+ Y+HRIGRTGRAG
Sbjct:    1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEE----ATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQF--MKAPE-HVKIAAKELTTEL--VDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA)

HSP 1 Score: 263.077 bits (671), Expect = 2.082e-82
Identity = 149/360 (41.39%), Postives = 213/360 (59.17%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGIDKGFGAARDI 362
            F  LGL   ++KA++  G+   TPIQ + IP+ L  KD+I  AQTGTGKTAAF +PI+E    K  ++  +V+ALV+APTRELAIQV   +        +  L +YGG D E Q++ L +   ++V TPGR++D   +  +  + +  +V+DEAD ML+MGF  DI+ I+  +P  RQ LLFSATM D +R     F +    E+ V++ A   +   P I Q+ + V +  K  +L+ L+  QA + A++F   K    +L   L  R   A+ IHGD SQA R  VL  FK G ++ LVAT VAARG+DI  ++ V N+D+P  P+ Y+HRIGRTGRAG      +G+   F   R+I
Sbjct:    4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE----KVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNE--PEL-VKVKAK--EMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG-----KTGVAMTFVTPREI 349

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|12644110|sp|P09052.3|VASA1_DROME (RecName: Full=ATP-dependent RNA helicase vasa; AltName: Full=Antigen Mab46F11)

HSP 1 Score: 267.7 bits (683), Expect = 4.609e-82
Identity = 157/377 (41.64%), Postives = 230/377 (61.01%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPIL-EMFKDKGELRGKSVRALVLAPTRELAIQV--EANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDR--LPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGID--KGFGAARDILEGLSVLEGS 372
            F++  L D I+  V   GY  PTPIQK +IPVI SG+DL+A AQTG+GKTAAF+LPIL ++ +D  EL     + ++++PTRELAIQ+  EA   A+  +L +    VYGG     Q + +  G  +++ATPGRLLD   +  + F++   +V+DEADRMLDMGF  D+ +I+    +    Q L+FSAT  ++++     F  + V  +A+ I       A   + Q +  V+K  K + L  ++ EQA D  ++F+E K  A  L S L++++    SIHGDR Q+ RE+ L DFK+G +K L+AT VA+RG+DI  +  V+NYD+P + DDY+HRIGRTGR G     +S  D  K    A D+++   +LEGS
Sbjct:  247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIG--IVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVF-VAIGIVG----GACSDVKQTIYEVNKYAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK---ILEGS 612

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|81689748|sp|Q63GX5.1|CSHA_BACCZ (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA)

HSP 1 Score: 263.462 bits (672), Expect = 6.642e-82
Identity = 146/341 (42.82%), Postives = 205/341 (60.12%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            F  LGL D +L++V++ G+   TPIQ + IP  L GKD+I  AQTGTGKTAAF LP+L    DK +   +SV+ +V+APTRELAIQV   +    +H  +  L +YGG D   Q++ L +   I+V TPGR+LD   ++ +    +E +V+DEAD ML+MGF  DI+ I+  +P   Q LLFSATM D +R     F  ++   I V+          P I Q+ + V +  K  +L+ L+  Q+ + A++F   K    +L   L  R   A+ IHGD +QA R  VL  FK G ++ LVAT VAARG+DI  ++ V N+D+P  P+ Y+HRIGRTGRAG
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL----DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV----TMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|146291075|sp|Q81IT9.2|CSHA_BACCR (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA)

HSP 1 Score: 263.462 bits (672), Expect = 7.150e-82
Identity = 146/341 (42.82%), Postives = 205/341 (60.12%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            F  LGL D +L++V++ G+   TPIQ + IP  L GKD+I  AQTGTGKTAAF LP+L    DK +   +SV+ +V+APTRELAIQV   +    +H  +  L +YGG D   Q++ L +   I+V TPGR+LD   ++ +    +E +V+DEAD ML+MGF  DI+ I+  +P   Q LLFSATM D +R     F  ++   I V+          P I Q+ + V +  K  +L+ L+  Q+ + A++F   K    +L   L  R   A+ IHGD +QA R  VL  FK G ++ LVAT VAARG+DI  ++ V N+D+P  P+ Y+HRIGRTGRAG
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL----DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV----TMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|81696998|sp|Q6HPE6.1|CSHA_BACHK (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA >gi|81715465|sp|Q81VG0.1|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA >gi|134039177|sp|A0R8U6.1|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA)

HSP 1 Score: 263.462 bits (672), Expect = 8.137e-82
Identity = 146/341 (42.82%), Postives = 205/341 (60.12%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            F  LGL D +L++V++ G+   TPIQ + IP  L GKD+I  AQTGTGKTAAF LP+L    DK +   +SV+ +V+APTRELAIQV   +    +H  +  L +YGG D   Q++ L +   I+V TPGR+LD   ++ +    +E +V+DEAD ML+MGF  DI+ I+  +P   Q LLFSATM D +R     F  ++   I V+          P I Q+ + V +  K  +L+ L+  Q+ + A++F   K    +L   L  R   A+ IHGD +QA R  VL  FK G ++ LVAT VAARG+DI  ++ V N+D+P  P+ Y+HRIGRTGRAG
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL----DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV----TMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335

[Close]

BLAST of rna helicase vs. SwissProt
Match: gi|81700027|sp|Q73EU1.1|CSHA_BACC1 (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA)

HSP 1 Score: 263.077 bits (671), Expect = 8.568e-82
Identity = 146/341 (42.82%), Postives = 205/341 (60.12%), Query Frame = 0

Query:    3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            F  LGL D +L++V++ G+   TPIQ + IP  L GKD+I  AQTGTGKTAAF LP+L    DK +   +SV+ +V+APTRELAIQV   +    +H  +  L +YGG D   Q++ L +   I+V TPGR+LD   ++ +    +E +V+DEAD ML+MGF  DI+ I+  +P   Q LLFSATM D +R     F  ++   I V+          P I Q+ + V +  K  +L+ L+  Q+ + A++F   K    +L   L  R   A+ IHGD +QA R  VL  FK G ++ LVAT VAARG+DI  ++ V N+D+P  P+ Y+HRIGRTGRAG
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL----DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV----TMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335

[Close]

BLAST of rna helicase vs. nr
Match: gi|933779692|ref|WP_054340761.1| (DEAD/DEAH box helicase [Neptunomonas antarctica] >gi|1131932376|emb|SIS90452.1| Superfamily II DNA and RNA helicase [Neptunomonas antarctica])

HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 278/350 (79.43%), Postives = 310/350 (88.57%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349
            M FSNLGLC+PIL+A++  GYTTPTPIQKQAIP+ILSGKDLIATAQTGTGKTAAFVLPILE+F  +  LRGK +RAL+L PTRELA+QV ANV AY++HL+LSSLAVYGGVDSE Q QRL+EGVDILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGF  DI KIIDRLP ARQNLLFSATM DDVR     FSDSK S  AVEIS +P    AP IDQWLITVDKDTKSALLSHLI +Q W+QALIFIEKKH AAKLV+QLAKR IEAD+IHGD+SQA+REK+LADFKSGKLKYLVATGVAARG+DIG LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S
Sbjct:    1 MTFSNLGLCNPILQAIEDSGYTTPTPIQKQAIPIILSGKDLIATAQTGTGKTAAFVLPILEIFNKERTLRGKRIRALILTPTRELAVQVAANVTAYSKHLNLSSLAVYGGVDSEAQKQRLIEGVDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMVDMGFVDDIYKIIDRLPKARQNLLFSATMTDDVRALAFEFSDSKTSNPAVEISTSPISTTAPTIDQWLITVDKDTKSALLSHLINDQQWNQALIFIEKKHGAAKLVAQLAKRGIEADAIHGDKSQAMREKILADFKSGKLKYLVATGVAARGLDIGDLSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350

[Close]

BLAST of rna helicase vs. nr
Match: gi|738204754|ref|WP_036160671.1| (DEAD/DEAH box helicase [Marinomonas ushuaiensis] >gi|575465316|gb|ETX11047.1| RNA helicase [Marinomonas ushuaiensis DSM 15871])

HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0
Identity = 276/350 (78.86%), Postives = 307/350 (87.71%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349
            M FS LGLC PI +A+K  GYTTPTPIQKQAIPVI+SGKDLIATAQTGTGKTAAFVLPILE F     LRGK VRAL+L PTREL++QVEANVA Y++H++L+S+A+YGGVD+E Q QRL+EGVDILVATPGRLLDL +QRA++FD+LEVLV+DEADRM+DMGF  DI+KIIDRLP ARQNLLFSATM DDVR     FSD K S+ AVEIS +P  KAAP I+QWLITVDKDTKSALLSHLIKEQ WDQALIFIEKKH AAKLV QLAKR IEADSIHGDRSQA+REK+L DFKSGKLKYLVATGVAARGIDIG LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S
Sbjct:    1 MLFSKLGLCSPIAQAIKELGYTTPTPIQKQAIPVIMSGKDLIATAQTGTGKTAAFVLPILERFSKVQTLRGKRVRALILTPTRELSVQVEANVALYSKHMNLTSMAIYGGVDTETQKQRLIEGVDILVATPGRLLDLIHQRALHFDKLEVLVLDEADRMVDMGFVGDINKIIDRLPEARQNLLFSATMTDDVRALSYGFSDDKASDQAVEISISPKTKAAPNINQWLITVDKDTKSALLSHLIKEQKWDQALIFIEKKHGAAKLVDQLAKRGIEADSIHGDRSQAMREKILGDFKSGKLKYLVATGVAARGIDIGDLSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350

[Close]

BLAST of rna helicase vs. nr
Match: gi|655019771|ref|WP_028468725.1| (DEAD/DEAH box helicase [Neptunomonas japonica])

HSP 1 Score: 558.525 bits (1438), Expect = 0.000e+0
Identity = 272/350 (77.71%), Postives = 307/350 (87.71%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349
            MPF NLGLC PI++A++  GYT PTPIQKQAIP+ILSGKDLIATAQTGTGKTAAFVLPILE F  +  LRGK +RAL+L PTRELA+QV ANV  Y++HL+LSSLAVYGGVDSE Q QRL+EG+DILVATPGRLLDL++QRA++FDELEVLV+DEADRM+DMGF  DI KII+RLP ARQNLLFSATM DDVR     FSDSK+S  AVEIS +P     P I+QWLITVDKDTKSALLSHLI +Q WDQALIFIEKKH AAKLV+QLAKR IEAD+IHGD+SQA+REK+LADFKSGKLKYLVATGVAARG+DIG+LSRVVNYDLPF+P++YIHRIGRTGRAG T E VS
Sbjct:    1 MPFLNLGLCKPIVQAIEELGYTAPTPIQKQAIPIILSGKDLIATAQTGTGKTAAFVLPILEAFNKERTLRGKRIRALILTPTRELAVQVAANVEQYSKHLNLSSLAVYGGVDSEVQKQRLIEGIDILVATPGRLLDLSHQRALHFDELEVLVLDEADRMVDMGFVDDIYKIIERLPKARQNLLFSATMTDDVRSIAYDFSDSKMSNPAVEISTSPKASTTPNINQWLITVDKDTKSALLSHLINDQQWDQALIFIEKKHGAAKLVAQLAKRGIEADAIHGDKSQAMREKILADFKSGKLKYLVATGVAARGLDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGSTGEAVS 350

[Close]

BLAST of rna helicase vs. nr
Match: gi|567429906|ref|WP_024023981.1| (RNA helicase [Marinomonas profundimaris] >gi|566041097|gb|ETI60484.1| RNA helicase [Marinomonas profundimaris])

HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 267/343 (77.84%), Postives = 301/343 (87.76%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            MPFS LGL  PI+KA+K  GY  PTP+Q+QAIP+ILSGKDLIATAQTGTGKTAAFVLP LE F   G LRGK +RAL+L PTRELA+QVEANVA Y++HL L+S+AVYGGVD E Q +RL+EGVDILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGF  ++ KI+DRLP  RQNLLFSATM D VR   + FSDSKVS+ A EI+ +P  K AP I QWLITVDKDTKSALLSHLIKEQ WDQALIFIEKKH AAKLV+QLAKR IEADSIHGDRSQA+REK+LADFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++Y+HRIGRTGRAG
Sbjct:    1 MPFSKLGLSSPIVKAIKELGYKKPTPVQEQAIPIILSGKDLIATAQTGTGKTAAFVLPTLERFNKVGTLRGKRIRALILTPTRELAVQVEANVALYSKHLKLTSMAVYGGVDMEAQKERLIEGVDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMIDMGFAENLYKILDRLPERRQNLLFSATMTDSVRALANEFSDSKVSDQAEEITISPKSKTAPNIKQWLITVDKDTKSALLSHLIKEQEWDQALIFIEKKHGAAKLVAQLAKRGIEADSIHGDRSQAMREKILADFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYVHRIGRTGRAG 343

[Close]

BLAST of rna helicase vs. nr
Match: gi|1270405578|gb|PHR99071.1| (DEAD/DEAH box helicase [Oceanobacter sp.])

HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0
Identity = 267/350 (76.29%), Postives = 308/350 (88.00%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349
            MPFSNLGL  PIL+A+ A GY+TPTPIQ QAIPVILSGKDLIATAQTGTGKTAAFVLPILE+F  +  LRGK +RAL+L PTRELA+QV  NVA Y++HL+LSS+AVYGGVD++ Q QRL+ GVDILVATPGRLLDLA+QRA++FDELE+LV+DEADRM+DMGF  DI+KII+RLP  RQNLLFSAT+ DDV      F++SK+ E+A EI+ +P   AAP I QWLITVDKDTKSALLSHLIKEQ WDQALIFIEKKH+AAKLV QLAKRDI+AD+IHGD+SQA+RE++LADFKSGKLKYLVATGVAARGIDIG LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S
Sbjct:    1 MPFSNLGLSAPILRAIDALGYSTPTPIQNQAIPVILSGKDLIATAQTGTGKTAAFVLPILELFNKERTLRGKRIRALILTPTRELAVQVTNNVAQYSQHLNLSSMAVYGGVDTDAQKQRLIAGVDILVATPGRLLDLAHQRALHFDELEILVLDEADRMVDMGFLGDINKIIERLPPTRQNLLFSATVTDDVLAISDSFANSKMGELAEEITISPHSTAAPSIKQWLITVDKDTKSALLSHLIKEQEWDQALIFIEKKHAAAKLVDQLAKRDIKADAIHGDKSQAMREQILADFKSGKLKYLVATGVAARGIDIGSLSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350

[Close]

BLAST of rna helicase vs. nr
Match: gi|1182634235|gb|ORU94077.1| (DEAD/DEAH box helicase [Cycloclasticus sp. symbiont of Bathymodiolus heckerae])

HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0
Identity = 268/350 (76.57%), Postives = 305/350 (87.14%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349
            M FSNLGL +PIL+A+K  GY TPTPIQKQAIP+I+SGKDLIATAQTGTGKTA+FVLPILE+F  + +LRGK +RAL+L PTRELA+QV AN+A Y +HL LSS+AVYGG+D+EPQ+QRL+EGVDILVATPGRLL LA+QRA++FDELEVLV+DEADRM+DMGF  DI KI DRLP  RQNLLFSATM+ +VR     FS SK+S+ AVEIS +P    AP I QWLITVDKDTKS LLSHLI EQ WDQALIFIEKKH AAKLV+QLAKR IEAD IHGDRSQA+REK+LADFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S
Sbjct:    1 MSFSNLGLSNPILQAIKDLGYITPTPIQKQAIPLIISGKDLIATAQTGTGKTASFVLPILEIFNKERQLRGKRIRALILTPTRELAVQVAANIAEYGKHLSLSSMAVYGGIDAEPQVQRLIEGVDILVATPGRLLHLAHQRALHFDELEVLVLDEADRMVDMGFANDIYKITDRLPETRQNLLFSATMSHEVRALADDFSYSKMSKPAVEISISPEATTAPTIKQWLITVDKDTKSTLLSHLINEQKWDQALIFIEKKHGAAKLVAQLAKRGIEADCIHGDRSQAMREKILADFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350

[Close]

BLAST of rna helicase vs. nr
Match: gi|1000090003|gb|KXJ57311.1| (DEAD/DEAH box helicase [Neptuniibacter sp. Phe_28])

HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0
Identity = 268/343 (78.13%), Postives = 300/343 (87.46%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            MPFS LGLC+P+L A+   GYT PTPIQKQAIP+IL+GKDLIATAQTGTGKTAAFVLPILE    +  LRGK +R L+L PTRELA+QV  NVA Y++HL+LSSLAVYGGVDSEPQ QRL+ GVDILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGF  DI KII+RLPT RQNLLFSATM+D VR     FSDSKVS+ AVEIS +P  K A  I+QWLITVDKDTKSALLSHLIK+Q WDQALIFIEKKH AAKLV QLAKR I A++IHGDRSQA+REK+L DFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG
Sbjct:    1 MPFSTLGLCNPLLLAINDLGYTAPTPIQKQAIPLILAGKDLIATAQTGTGKTAAFVLPILERLNKERTLRGKRIRVLILTPTRELAVQVAGNVAEYSKHLNLSSLAVYGGVDSEPQKQRLIAGVDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMVDMGFADDIHKIIERLPTERQNLLFSATMSDGVRALADDFSDSKVSKPAVEISVSPKTKTAATINQWLITVDKDTKSALLSHLIKDQQWDQALIFIEKKHGAAKLVDQLAKRGIVAEAIHGDRSQAMREKILEDFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAG 343

[Close]

BLAST of rna helicase vs. nr
Match: gi|1056553454|ref|WP_067985833.1| (DEAD/DEAH box helicase [Neptuniibacter pectenicola])

HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0
Identity = 267/343 (77.84%), Postives = 299/343 (87.17%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            MPFS LGLC+P+L A+   GYT PTPIQKQAIP+IL+GKDLIATAQTGTGKTAAFVLPILE    +  LRGK +R L+L PTRELA+QV  NVA Y++HL+LSSLAVYGGVDSEPQ QRL+ GVDILVATPGRLLDL +QRA++FDELEVLV+DEADRM+DMGF  DI KII+RLPT RQNLLFSATM+D VR     FSDSKVS+ AVEIS +P  K A  I+QWLITVDKDTKSALLSHLIK+Q WDQALIFIEKKH AAKLV QLAKR I A++IHGDRSQA+REK+L DFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG
Sbjct:    1 MPFSTLGLCNPLLLAINDLGYTAPTPIQKQAIPLILAGKDLIATAQTGTGKTAAFVLPILERLNKERTLRGKRIRVLILTPTRELAVQVAGNVAEYSKHLNLSSLAVYGGVDSEPQKQRLIAGVDILVATPGRLLDLTHQRALHFDELEVLVLDEADRMVDMGFADDIHKIIERLPTERQNLLFSATMSDGVRALADDFSDSKVSKPAVEISVSPKTKTAATINQWLITVDKDTKSALLSHLIKDQQWDQALIFIEKKHGAAKLVDQLAKRGIVAEAIHGDRSQAMREKILEDFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAG 343

[Close]

BLAST of rna helicase vs. nr
Match: gi|1198998532|ref|WP_087107642.1| (ATP-dependent helicase [Halomonas sp. JB380] >gi|1145422377|emb|SJN12096.1| ATP-dependent RNA helicase VC1407 [Halomonas sp. JB380])

HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0
Identity = 261/343 (76.09%), Postives = 299/343 (87.17%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            M F+ LGL  P+++A+   GY TPTPIQ+QAIP ILSG DLIATAQTGTGKTAAFVLP+LE F   G LRGK +RAL+L PTRELA+QVEA+VA YA+HL L+S+AVYGGVDSEPQ QRL+EG+DILVATPGRLLDLA+QRA++FDEL  +V+DEADRM+DMGF  DI+KII+RLP  RQNLLFSATMN DVR     FSDSK++++A EIS +P  +AA  I QWLITVDKDTKSALLSHLI EQAWDQALIFIEKKH AAKLV QLAKR I+ADSIHGDRSQA+REK+LA FKSG+LKYLVATGVAARG+DIG+LSRVVNYDLPFQP++YIHRIGRTGRAG
Sbjct:    1 MSFAKLGLSSPLVQAITELGYKTPTPIQEQAIPAILSGNDLIATAQTGTGKTAAFVLPLLERFSTAGTLRGKRIRALILVPTRELAVQVEASVAQYAKHLHLTSMAVYGGVDSEPQKQRLIEGIDILVATPGRLLDLAHQRALHFDELNAMVLDEADRMVDMGFVDDINKIIERLPENRQNLLFSATMNGDVRALAYGFSDSKMTDLASEISISPNIRAAANIKQWLITVDKDTKSALLSHLINEQAWDQALIFIEKKHGAAKLVDQLAKRGIKADSIHGDRSQAMREKILAQFKSGELKYLVATGVAARGLDIGELSRVVNYDLPFQPEEYIHRIGRTGRAG 343

[Close]

BLAST of rna helicase vs. nr
Match: gi|518449832|ref|WP_019620039.1| (hypothetical protein [Amphritea japonica])

HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 259/343 (75.51%), Postives = 303/343 (88.34%), Query Frame = 0

Query:    1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343
            M F NLGL +PI++A++  GY  PTPIQ QAIP++LSGKDLIATAQTGTGKTAAFVLPILE F  +  LRGK +RAL+L PTRELA+QV A+VA Y+ HL+L+S+AVYGGV++EPQ +RL+EG+DILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGFG +I KIIDRLP ARQNLLFSATM+DDVR     FSDSK+S  AVE+S +P   +A  I+QWLITVDKDTKSALLSHLI EQ WDQALIFIEKKH+AAKLV QLAKR I+A++IHGDRSQ +REK+LADFKSGKL+YLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG
Sbjct:    1 MTFLNLGLSNPIVQAIEDSGYNAPTPIQTQAIPIVLSGKDLIATAQTGTGKTAAFVLPILENFNQERTLRGKRIRALILTPTRELAVQVAASVAMYSTHLNLTSMAVYGGVNAEPQKERLIEGIDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMVDMGFGEEIRKIIDRLPDARQNLLFSATMSDDVRALAEGFSDSKMSTPAVELSISPKATSASTINQWLITVDKDTKSALLSHLINEQQWDQALIFIEKKHAAAKLVVQLAKRGIKAEAIHGDRSQIMREKILADFKSGKLQYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAG 343

The following BLAST results are available for this feature:

BLAST of rna helicase vs. L. salmonis genes
BLAST of rna helicase vs. SwissProt
BLAST of rna helicase vs. nr

BLAST of rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000002581	3.236e-62	34.69	supercontig:LSalAtl2s:LSalAtl2s151:1305107:1306803...	[more]
EMLSAG00000002458	6.881e-62	36.09	supercontig:LSalAtl2s:LSalAtl2s1472:18624:24320:1 ...	[more]
EMLSAG00000012967	5.988e-61	34.19	supercontig:LSalAtl2s:LSalAtl2s98:1266421:1269115:...	[more]
EMLSAG00000000395	2.849e-59	36.31	supercontig:LSalAtl2s:LSalAtl2s1063:103535:105763:...	[more]
EMLSAG00000000249	4.738e-59	32.84	supercontig:LSalAtl2s:LSalAtl2s1036:82728:88820:1 ...	[more]
EMLSAG00000006912	1.177e-55	33.73	supercontig:LSalAtl2s:LSalAtl2s391:287461:291724:1...	[more]
EMLSAG00000002659	1.046e-53	32.14	supercontig:LSalAtl2s:LSalAtl2s153:555306:559625:1...	[more]
EMLSAG00000009885	1.097e-49	37.06	supercontig:LSalAtl2s:LSalAtl2s643:195185:200626:1...	[more]
EMLSAG00000007706	1.197e-48	33.24	supercontig:LSalAtl2s:LSalAtl2s449:21910:24507:-1 ...	[more]
EMLSAG00000011335	5.565e-47	33.43	supercontig:LSalAtl2s:LSalAtl2s781:205091:212596:-...	[more]

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BLAST of rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|548730\|sp\|P25888.3\|RHLE_ECOLI	2.775e-119	52.62	RecName: Full=ATP-dependent RNA helicase RhlE	[more]
gi\|81768862\|sp\|Q8Y8N0.1\|CSHA_LISMO	2.150e-84	45.45	RecName: Full=ATP-dependent RNA helicase CshA	[more]
gi\|75535255\|sp\|Q9Z6C9.1\|CSHA_LACRE	5.901e-83	43.31	RecName: Full=ATP-dependent RNA helicase CshA; Alt...	[more]
gi\|61223743\|sp\|P0A4D7.1\|CSHA_STRPN	2.038e-82	43.44	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|81675946\|sp\|Q5L3G9.1\|CSHA_GEOKA	2.082e-82	41.39	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|12644110\|sp\|P09052.3\|VASA1_DROME	4.609e-82	41.64	RecName: Full=ATP-dependent RNA helicase vasa; Alt...	[more]
gi\|81689748\|sp\|Q63GX5.1\|CSHA_BACCZ	6.642e-82	42.82	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|146291075\|sp\|Q81IT9.2\|CSHA_BACCR	7.150e-82	42.82	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|81696998\|sp\|Q6HPE6.1\|CSHA_BACHK	8.137e-82	42.82	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|81700027\|sp\|Q73EU1.1\|CSHA_BACC1	8.568e-82	42.82	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]

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BLAST of rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|933779692\|ref\|WP_054340761.1\|	0.000e+0	79.43	DEAD/DEAH box helicase [Neptunomonas antarctica] >...	[more]
gi\|738204754\|ref\|WP_036160671.1\|	0.000e+0	78.86	DEAD/DEAH box helicase [Marinomonas ushuaiensis] >...	[more]
gi\|655019771\|ref\|WP_028468725.1\|	0.000e+0	77.71	DEAD/DEAH box helicase [Neptunomonas japonica]	[more]
gi\|567429906\|ref\|WP_024023981.1\|	0.000e+0	77.84	RNA helicase [Marinomonas profundimaris] >gi\|56604...	[more]
gi\|1270405578\|gb\|PHR99071.1\|	0.000e+0	76.29	DEAD/DEAH box helicase [Oceanobacter sp.]	[more]
gi\|1182634235\|gb\|ORU94077.1\|	0.000e+0	76.57	DEAD/DEAH box helicase [Cycloclasticus sp. symbion...	[more]
gi\|1000090003\|gb\|KXJ57311.1\|	0.000e+0	78.13	DEAD/DEAH box helicase [Neptuniibacter sp. Phe_28]	[more]
gi\|1056553454\|ref\|WP_067985833.1\|	0.000e+0	77.84	DEAD/DEAH box helicase [Neptuniibacter pectenicola...	[more]
gi\|1198998532\|ref\|WP_087107642.1\|	0.000e+0	76.09	ATP-dependent helicase [Halomonas sp. JB380] >gi\|1...	[more]
gi\|518449832\|ref\|WP_019620039.1\|	0.000e+0	75.51	hypothetical protein [Amphritea japonica]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold2_size2283618	supercontig	scaffold2_size2283618:1007362..1012772 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold2_size2283618-processed-gene-10.6-mRNA-1	snap_masked-scaffold2_size2283618-processed-gene-10.6-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold2_size2283618:1007362..1012772+

gene from alignment at scaffold2_size2283618:1007362..1012772+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold2_size2283618-processed-gene-10.6 ID=snap_masked-scaffold2_size2283618-processed-gene-10.6|Name=rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=5411bp|location=Sequence derived from alignment at scaffold2_size2283618:1007362..1012772+ (Tigriopus kingsejongensis)
ATGCCATTTTCAAATCTTGGATTGTGCGATCCCATTCTGAAAGCCGTGAA
GGCTCAGGGTTATACAACGCCTACGCCAATCCAAAAACAAGCGATCCCCG
TGATCCTATCTGGCAAAGATCTCATTGCCACTGCGCAAACCGGCACGGGT
AAAACAGCTGCTTTTGTGCTGCCCATCTTAGAGATGTTTAAGGATAAGGG
TGAGTTGCGCGGTAAAAGCGTCCGTGCGTTGGTCTTGGCACCTACACGAG
AGCTGGCGATACAGGTTGAAGCCAACGTTGCCGCGTATGCCGAGCATCTA
GATCTGAGTTCGCTGGCTGTCTATGGAGGCGTGGACTCTGAGCCTCAGAT
GCAGCGATTGGTGGAAGGAGTGGATATTTTGGTCGCTACACCGGGGCGGC
TGCTTGATCTGGCTTACCAACGTGCGGTGTATTTCGACGAACTGGAAGTG
TTGGTGATCGATGAAGCCGATCGAATGCTGGATATGGGCTTTGGCCGCGA
CATAGATAAAATTATTGATCGGCTGCCCACGGCGCGTCAGAACCTATTGT
TTTCCGCCACCATGAACGACGATGTGCGTGAGTTTGTCTCGCACTTCTCT
GACAGTAAGGTGAGTGAGATTGCAGTAGAAATATCTGCCACTCCCACAAA
GAAAGCTGCGCCTGGCATTGATCAGTGGCTAATCACCGTCGACAAAGATA
CGAAGTCCGCTTTGCTCAGCCACTTGATAAAGGAGCAAGCTTGGGATCAG
GCGCTCATTTTTATCGAGAAGAAACACAGTGCGGCCAAGCTGGTCAGCCA
GCTGGCGAAGCGTGATATTGAAGCGGACTCCATACACGGGGACCGGAGCC
AAGCGGTGCGGGAAAAAGTACTGGCTGATTTTAAATCAGGCAAGCTCAAA
TACTTGGTCGCCACAGGGGTTGCCGCGCGTGGTATCGATATTGGAAAGCT
CAGTCGCGTGGTCAATTATGATCTGCCATTCCAGCCTGATGATTATATCC
ACCGTATTGGCCGGACAGGCCGTGCAGGCACGCCAGGTGAGGCAATCTCG
TTTGTGACATTGGCTGACTTCAAGAATCTATGCGCGATAGAAAGCAGTCT
AAATAGTTTAATAGCCCGAAAAGAAATAGACGGGTTCCCCGTCCGCAAAG
CAGTGCCAGTCTCTGTTTTGAATCATGTGAGCAAGCGATCACCAGGGCGT
TAACGGCGATACCCTCAACACCAACGAGAGAGCAGATTGATCAGTCGGGA
TGGGTGCATGAGTACCCGCTATCTCGTCTGATGACTCCAAGCGATAAAGC
AGATGCCGGATATTAAACATTACCTCAGTGGTTACGGCCCCGATGTGCTT
GCACAGGTTGAGCAGCTCGTGGAGCAAAAACGCTTAGGGCATGTGCTGAA
GAAACGTTACCCGGAACCACATGCCTTTGCTTCTAATAAAGCACTGTATG
ACTATGTATCGGATTTAAAAAACACTTACATCAAAAAATCTTCACCATTG
AGTAAGGTCGTTTACGACGACAAAATTCATATCATTAATCAGGCGCTTGG
GTTGCATACGCAACTCTCGCGGGTGCACGGTGGCAAACTAAAGTCGAAAA
TAGAAATTCGCATTGGCTCTGCTTTTAAGAAAATGCCACTGCCTTTACTG
CGCATGATCTGCGTGCATGAGCTGGCGCATCTGAAAGAAAAAGACCACAA
CAAAGCCTTCTATAACCTCTGCCAATACATGGAACCCGACTATCATCAGC
TGGAGTTTGATACACGCTTGTACTTGACGCATCAAGAGTTTTTTGGCGAC
CTGTATGAATAATCCTACCGCCTGCCACTTGAATCGATTCAGTGGAAAGA
CACCGATTATGCACCTTTAATAGGGTTGAAGGCGTTATGTGCCGGTACCT
TGGTGAGCAGGTTGTGCTATCGCCGCCAAACAGAAAGTGCTGGCGTACAC
GATGGTATTGGAAGTAGTGCGTTTTTGTTAGAAGCTGTTGCCGCCAAGCA
TTCTAGGATCCTCCTTAGGTTCGTTGACAAAGATTATTGATTTAGATGAG
CACCTAGGCAATTGTGGCAGTAGGGCTCCAATACTTGGACGTATCGGGAG
GGCGATTATTTTTACTGGCACGCTTGCGGCAAAACTAGTGTATGGTCAAT
CTCAGTAGGAACTCTGTTCCGATCCTCTCTCGAGCATAATCTCTCGCCAG
TTCATCGGCAATTTCACCCGCTCTCTTTCTGAGCCCGACGCTTAAATCGT
CTTGTCTGCGCCACTTTGGCGTGTGGCTTTCGTGTGCGCGCAATATTGAC
AATTTGTAGACGTTTCCCTTGGCTAGCAGCTTTTACAAGCATGCCCAAGT
TGGAAATTTTGATGAGAATTTTCTAGGAAAATATTTAGTACCATGCCTAT
AAACAACACTGTGTTAGAAGAAGGACCCGAGGTTAAAGCGTCGAAACCTA
CGATACTTTCCTTTGCTAAAGACCTACCGAATATCTGTTCGTTGGCTGGA
TTGGGTTGCACAATACTCGCGATATATTTCAGTATTTTGGGGATCTACTC
TGCAGCCATGATCGGCATGGTATGGGCCGTTGCTTTTGATTGGGCTGACG
GTCTAATCGCTAGAAAGATGAAAGGACGTACGGGTACTGACAGCGCATTT
GGTGGGCAAATTGATGTTCTGATCGACATCGTAAGTTACGGTGTTACACC
TGCAATTCTTCTTTTGAGCTACGGCGGTTTCGAACCCATATTTTTGGTAG
GAGCTTTTATCATGCTCGCTACTTGCGCATTAAGATTGAGCTATTTTGCG
ACATTTGGACTCTCTGATGATTCTAAATATATCGGATTAGCCATGGATAA
CAACAGCCTGATACTTGTCTTTGTCTTGTTTTTTGAAGGGATGGTTAGCG
AAGGGGCGTTCTCGCTGATCCTTTATGCATGTTGTCTCAGGCTTGCCGCA
TTAAACGTTTCCAAAATCAAGACACCTAAGCTTTCTGGAAATCCTANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGACACCTAAGCTTTCT
GGAAATCCTAATAACGTCCGTATTCTCGCAGCGTATACGCTTGGAACGAC
AGCTTTCTGTTTATGGAAGCTTTTGTAAAAGTTAATGCAAGTCATGAGGA
TTGACTATCGGAACAGTACTTCTAATTAGGGTTGATGAGAAAAATGGTTG
TTTATACCGTAGGAACGTTTGATTTGTTGCATGTAGGGCACCTCGCATTG
CTTGAGCAATGTCAGAAGATGGGTGATGTCGTGGCGGTTGGTGTCGCGTC
TGATAGGGTGGTGAACTCTTACAAGCCCAACGTTCCCGTTATTCCTCTCG
CTCAGCGCGAAGAGATGTTACGGGCATTACGCTGTGTTGATATTGTTCGT
CCTTATCATGAGCTGGAATATGTTTCTGGCTGCAAGGCATTGGATGTTGA
TATATTTGTGGTCGGTGAAGATTGGGGACGCAATACCCATAATTTGGATG
TGGAAACTTATCTGTTGTCCCGTGGTAAGCAGGTAATCAAAGTTTTATAC
GATAAACGCACCTCGTCTACGCAAATTAAGCACTGTGTTTTAGACCAGAA
CTCAGTTCAGTCACCTGAAAGAGAACGGGCAAGACAATTAGCGGCTACTC
ACTAACACCACATCGTGTCAGTAAGGCTGCATCATTGAAACGTACTTGAA
TAACTCGCGTGTTTGTCTGTCCGATGGTTTTATCTGACTTCACGTGGCTG
TTAAAACTTTGATGTATAGTGAGTTTTTTGTTCATATTGGGGTGCGGCGT
GAGCAAAGCTACTGACAAAGAATTAGTGATGATGCGTACTGATGTAAAAG
ACTCTTTGCAACGCCTGTGTTCAAGTGCATCAAGCGGTGTCTGTCTAGCC
GCATGCTCCCTTGTCTTCTTGGCCGCTCTTGTCGGGAAGCCCGCATTGGC
CCAGACGATTCCTTGTGCCGATGTTCGGTTTTTGATCGAGCAATCTAGAA
CTGGATTTCTGGCGATTCAGCGGGATACACGCCATGAGTTTGGAGGCTTT
GATACGACGATAAAGCTGTCAGAAGCTGAGTACTGTGTGATTCTTGAAGA
CGTTGAAAAGCGGTCGTTTAGGTGCGCTTGGAAATACTCTCACTCAGATA
GGCAGGCCGAAGCAAAATATACACAGATGCGCGAAAACCTTGTTGTGTGT
TTGGGCAATAGTGCCAGTGTACAAAAGGACCAACCGGTCAATCACCCCGA
CATCTACGAGTCTTACCTATACAGGTTACCGGCTGTTGAGCTACGCATTT
CTCTCAAGGAGAAAAGCGCGTTGAAGAGCACTTTTGTCTCGTTTGTTGTT
GAGCAACGGCCAGCGAAATAGGCTGGACAATCCGTTTCCACGAGAGACGT
TTCCCGATAGTTGAGTTGCTGGGCTTGAACATCCTTTTTGTTAGTCGACA
AAAACGGTCGTTTTGCTTCTGTGCCACTGTCTGTTGCGTGTTAGGCGCGT
TAGCCCTTCAGAGCGGTGGGGCCATGCAAAACAAGCGGCCTTTTACACGC
TATCAGCTAGTCTCGAGTCCATAGTCTGCAGACTGTGGGGCTGAACTCCA
CGATTGTTAGTCTAAGTTCGAATGAAAAGCCGCCGATGTTATCGGGGTAG
CTCTACTGTGTCCTTGGTTTAGAGCGGAGAACCAGTGAGTACGCTAATGG
CCGTTTCACCTCTAGCAACATCTTCTGCACTAAGCTCAGAGTCAATTAGC
GACCGTCCGCGCAATCAGATAGCTTCGGCTGAAAAACAATCGAATTCTGA
ACCGTTGAGTGCGTCGGAGTTACGTAATCAGCGAGCGAAACAACATAATC
TCGCGATTCTTGAAGCCAATCAAAACGCTAGTCTATCGGTCTCTGGACAG
CCGCTGAGTTTGCTGTACCAAACTGCCATTAACGCGATAAACGCCGAGCT
TGCATCGACCATGGGCGACAACGCCGTTGAACGCACTCAACACGAGGGGA
TAGATACCTCTCCCGAGGCGACGGCCGGGCGCATTGTGAGCATAACGATG
GGAAATTTCGGCAAGTTCCAAGAACACCACGCCGATTTGCCGCAGTCTGA
ACAAGTTGATCGCTTTTTAGAACTGGTCAGCTCAGGGATTGATAAAGGCT
TTGGCGCCGCCAGAGATATCCTGGAGGGTCTCTCCGTACTCGAAGGCTCT
ATCGCTGAGGATATTAGTAAAACTTATGATCTAGTGCAGCAGGGTTTAGA
GCACTTTCGTGAGCACTTCTTGGCTGATAATAGCTCTGAAGAAAAGGCCG
ATGATGTCTAG

Synonyms

The feature 'rna helicase' has the following synonyms


Synonym
Tk00049

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