rna helicase, snap_masked-scaffold2_size2283618-processed-gene-10.6 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000012740 (supercontig:LSalAtl2s:LSalAtl2s967:89676:95604:1 gene:EMLSAG00000012740 transcript:EMLSAT00000012740 description:"augustus_masked-LSalAtl2s967-processed-gene-0.13") HSP 1 Score: 162.54 bits (410), Expect = 6.393e-45 Identity = 110/334 (32.93%), Postives = 185/334 (55.39%), Query Frame = 0 Query: 21 YTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQM---QRLVEGVDILVATPGRLLDLAYQ-RAVYFDELEVLVIDEADRML-DMGFG--RDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLI-TVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAK-RDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTP 345 Y PTPIQ Q+IP++L G+D++ +A TG+GKTAA++LPIL + ++K +L+ ++L PTREL+ Q+ + E L L + ++ Q+ ++ +G ++L++TP L+ L ++ LE L++DE+D++ D G R+ ++ + + + FSAT+ DV + D+ AV ++ KA + Q L+ T + K+ L++LI + LIF++ A +L L K + I+A+ IH RS RE + F++G+ L+ T + +RGID+ ++ V+NYD P YIHR+GRTGRAG P Sbjct: 87 YPNPTPIQAQSIPIMLQGRDVLGSAPTGSGKTAAYLLPIL-VNQEKNKLK-----TIILCPTRELSHQI------HQEALKL----IPPNYQTKVQVASSKKSNQGANVLISTPNTLVYLIKDGSSLDLKSLEWLIVDESDKLFEDKGKASFREQLAVVYKACMSSKKAFFSATLATDVENWCKTNLDN-----AVSVTIGIRNKACKDVKQSLVYTGSEKGKNYALTNLINDGIKPPVLIFVQDFERADELKEILTKQKKIKAEVIHSHRSLLQREDAIKTFRAGRTWVLICTELMSRGIDVKGVNLVINYDFPPSTVSYIHRVGRTGRAGRP 399
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000006615 (supercontig:LSalAtl2s:LSalAtl2s364:491177:493327:-1 gene:EMLSAG00000006615 transcript:EMLSAT00000006615 description:"snap_masked-LSalAtl2s364-processed-gene-5.14") HSP 1 Score: 159.844 bits (403), Expect = 9.498e-44 Identity = 120/372 (32.26%), Postives = 189/372 (50.81%), Query Frame = 0 Query: 6 LGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEH----LDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYF-DELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDV---REFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWD-QALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVA------------------------TGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGT 344 +GL D +L++V G++ PT IQ +A+P+IL GKDL+A +TG+GKT AF LP+L+ GE G SVRAL LAP+REL Q+ V + H + + +L++ G + E L D LV+TPGRL + + LE+LVIDEAD G+ D+ I+ LP+ Q++L SAT+++DV ++ V H + + +++ P A + Q+LI ++++ K L+ L K + + +IF+ K+ L + I ++ + A R ++ F G +VA +G+ +RGID +S V+N+D P D YIHR+GRT R Sbjct: 1 MGLDDRLLESVAELGWSEPTLIQSRAVPLILEGKDLLARGRTGSGKTGAFALPVLQRLL-LGESTG-SVRALFLAPSRELVQQIHGVVRSLLSHCGRSISIGNLSM--GENLEAGRALLKTPPDXLVSTPGRLWSHIQAKDIDLSSSLEILVIDEADLTFSFGYESDLKGILINLPSIYQSVLTSATLSEDVNKLKKLVLH------NPVILQLEE-PQLAEAXQLAQYLIKIEEEDKFLLIYALFKLRLIQGKTIIFVNNVDRCYKIKLFLEQFGIPVCVLNSELPAASRCHIVTQFNKGIYDIIVAXDENFLHCSNPNDKDKGKRKKDTESGI-SRGIDFQFVSNVINFDFPLDVDSYIHRVGRTARGNN 360
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000005732 (supercontig:LSalAtl2s:LSalAtl2s309:725565:728317:1 gene:EMLSAG00000005732 transcript:EMLSAT00000005732 description:"maker-LSalAtl2s309-augustus-gene-7.79") HSP 1 Score: 159.073 bits (401), Expect = 1.855e-43 Identity = 114/392 (29.08%), Postives = 191/392 (48.72%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFK-DKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLD-LSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIA--VEISATPTKKAAPGIDQWLIT------VDK--DTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGIDKGFGAARDILEGLSVLEGSIAEDISKTYD 382 F + PIL+ +K GY P+PIQ A+P L+G D + +++GTGKT +VL L + EL+G L++APTRE+A+Q + HL L + GG+ E +L + + +PGR+ L + + +L+V ++DEAD++ + F D+ I+ LP Q L SAT F + ++ +S++ + + G++Q+++ V K D K L LI +++Q ++F A + +L R A + G + Q R L D K+ + + ++ T ++ARGID ++ V+N+D+P Q Y+HRIGR GR G S GI + D ++ +S + S D+ T D Sbjct: 22 FEHFQFQSPILEGLKVNGYQVPSPIQVSALPYTLAGLDXLVQSKSGTGKTLVYVLSALSSIDVESNELQG-----LLIAPTREIAVQGAQTMLEIGGHLSKLKASTFIGGMSVEEDKLKL-KKCHMAFGSPGRVKQLIEEGVMNVSQLKVFILDEADKLCEKSFKEDLSWIMRTLPEIHQTLALSAT-------FPNSLENTLISKLKNPTHVRLGQDCQVLLGVNQFVLESPSHGLVKKVVDYKFESLLKLISNVSFEQCIVFCNYSLRARAICDKLNDRGWPAIFLAGMQEQKDRLNSLKDLKTFRCRIVLTTDLSARGIDARHVNFVINFDVPSQGTTYLHRIGRAGRYG-----SKGIALTIASKGDEMKNVSNIAKSTNSDVRVTDD 395
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000012588 (supercontig:LSalAtl2s:LSalAtl2s93:784098:785897:1 gene:EMLSAG00000012588 transcript:EMLSAT00000012588 description:"maker-LSalAtl2s93-augustus-gene-7.24") HSP 1 Score: 153.295 bits (386), Expect = 2.717e-42 Identity = 122/382 (31.94%), Postives = 199/382 (52.09%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSG--KDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQ---VEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFD--ELEVLVIDEADRMLDMGFGRDID-KIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDK-DTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPF------QPDDYIHRIGRTGRAGTPELVSSGID--KGFGAARDILEGLS 367 F +L L +LK V G+ P+ IQ+ A+P +L+ +++IA +Q+GTGKTAAFVL +L + + + L L+PT ELA+Q V ++ ++ L + AV G + P+ ++ + I++ TPG+ +D A + +FD +++V V+DEAD M+ M +D +I L Q LLFSAT ++DV F + + V I ++ I Q+ ++ + + K +S++ QA+IF + + A+ L +L K + G+ S R ++L F+ G K L+ T V ARGID+ ++S VVN+DLP + Y+HRIGRTGR G L + +D K +DI + S Sbjct: 62 FESLNLKPALLKGVYGMGFNNPSKIQEMALPALLADPPQNMIAQSQSGTGKTAAFVLAML----SRVDXSLNYPQVLCLSPTYELALQTGEVATKMSQFSPELTVR-YAVRG--EEIPRGSKITD--HIIIGTPGKTMDWAI-KFKFFDIKKVKVFVLDEADVMIAMQGHQDQSIRIQKSLSPDCQMLLFSATYDEDVMNFAENIISNPVL-----IRLRREEETLDNIKQYWVSCETLEAKXXAISNIYGVITIGQAMIFCQTRKGASWLAEKLVKEGHSVGMLSGELSIDERIRMLDRFRDGMEKILITTNVMARGIDVEQVSIVVNFDLPVDVAGKADCETYLHRIGRTGRFGKKGLAINLVDGPKSMAVLKDIEDHFS 428
BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000010227 (supercontig:LSalAtl2s:LSalAtl2s679:403636:405959:-1 gene:EMLSAG00000010227 transcript:EMLSAT00000010227 description:"maker-LSalAtl2s679-augustus-gene-3.17") HSP 1 Score: 149.443 bits (376), Expect = 5.307e-40 Identity = 115/350 (32.86%), Postives = 173/350 (49.43%), Query Frame = 0 Query: 25 TPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGK--SVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLV-----EGVDILVATPGRLLDL------------AYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDS----KVSEIAVEIS-ATPTKKAAPGIDQWLITVDKDTK--SALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADS-----IHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 TPIQ AIP+ L KD+ A A TG+GKT AFV+PILE+ + K + AL+L+PTRELA Q+ + + + + + G + + EG I++ATPGRL D+ A + A F ++L++DEADR+L +GF I+ II LP R+ LFSAT D+ E + + KV E E +TP K + + + D K + LL L E A + ++F + + S L +R ++ D+ +HG + R K+ FK + LV T V +RG+D + VV +D P + ++HRIGRT R+G Sbjct: 37 TPIQAXAIPLFLGLKDVCAEAVTGSGKTLAFVIPILEILLNSSNEESKVHDIGALILSPTRELASQISQVLEVFLSKIPSLNSLLIIGGGGSSSVGETLRKFEKEGAKIIIATPGRLEDILTGKTESINQLKAEKMARGFKSTKILILDEADRLLRLGFETAINTIISFLPKQRRTSLFSATQTKDLDELIRAGLRNPVLVKVKEHGKENELSTPIK-----LTNYYMKCDPPAKKFATLLKFLKTEAAGKKTMVFFS-TCACVEYFSTLLERFLKDDNTPVFALHGQKG-GTRFKIFDKFKKLDMGVLVCTDVLSRGVDFPDVEWVVQFDAPKTAEAFVHRIGRTARSG 379
BLAST of rna helicase vs. SwissProt
Match: gi|548730|sp|P25888.3|RHLE_ECOLI (RecName: Full=ATP-dependent RNA helicase RhlE) HSP 1 Score: 357.451 bits (916), Expect = 2.775e-119 Identity = 181/344 (52.62%), Postives = 237/344 (68.90%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILE-MFKDKGELRGK-SVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRA 342 M F +LGL IL+AV QGY PTPIQ+QAIP +L G+DL+A+AQTGTGKTA F LP+L+ + + +G+ VRAL+L PTRELA Q+ NV Y+++L++ SL V+GGV PQM +L GVD+LVATPGRLLDL +Q AV D++E+LV+DEADRMLDMGF DI +++ +LP RQNLLFSAT +DD++ K+ +EI A+ + Q + VDK K LLSH+I + W Q L+F KH A L QL K I + +IHG++SQ R + LADFKSG ++ LVAT +AARG+DI +L VVNY+LP P+DY+HRIGRTGRA Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALA-----EKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRA 339
BLAST of rna helicase vs. SwissProt
Match: gi|81768862|sp|Q8Y8N0.1|CSHA_LISMO (RecName: Full=ATP-dependent RNA helicase CshA) HSP 1 Score: 269.626 bits (688), Expect = 2.150e-84 Identity = 155/341 (45.45%), Postives = 206/341 (60.41%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 FS GL + I+K+V G+ TPIQ++ IP+ L GKDLI AQTGTGKTAAF LP++ K +V+AL++APTRELAIQV + + + LAVYGG D Q++ L + I+V TPGR+LD +R + D +E LV+DEAD ML+MGF DI+ I+ +P RQ LLFSATM D +R F S E+ I + A I+Q+ + V + K +LS L+ QA + A++F K +L L R A+ IHGD +QA R VL FK GK+ LVAT VAARG+DI ++ V NYD+P P+ Y+HRIGRTGRAG Sbjct: 4 FSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKS----NNVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHS--PEL---IRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
BLAST of rna helicase vs. SwissProt
Match: gi|75535255|sp|Q9Z6C9.1|CSHA_LACRE (RecName: Full=ATP-dependent RNA helicase CshA; AltName: Full=Autoaggregation-mediating protein) HSP 1 Score: 265.388 bits (677), Expect = 5.901e-83 Identity = 149/344 (43.31%), Postives = 201/344 (58.43%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREF-VSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 M FS LGL D +LKA+K GY TPIQ+Q IP++L GKD+I AQTGTGKTAAF LPI+E + +++A++++PTRELAIQ + + + + VYGG D Q++ L + ILV TPGRL D + V D ++ LV+DEAD ML+MGF DI+ II P RQ LLFSATM +++ V SD + I + T +DQ+ + K +++ LI Q D ++F K +L L R A IHGD +Q R K++ FK+ +L LVAT VAARG+DI ++ V NYD+P PD Y+HRIGRTGRAG Sbjct: 1 MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENV----DTENPNIQAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDL------VDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAG 334
BLAST of rna helicase vs. SwissProt
Match: gi|61223743|sp|P0A4D7.1|CSHA_STRPN (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA >gi|61223744|sp|P0A4D8.1|CSHA_STRR6 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA; AltName: Full=Exported protein 9) HSP 1 Score: 264.618 bits (675), Expect = 2.038e-82 Identity = 149/343 (43.44%), Postives = 206/343 (60.06%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 M F+ L L +L ++ G+ +PIQ+Q IP+ L GKD+I AQTGTGKTAAF LP LE + + +++ALV+APTRELA+Q + + + + +VYGG E Q++ L G I+V TPGRLLDL ++A+ ++E L++DEAD ML+MGF DI+ II R+P RQ LLFSATM D ++ F K E V+I+A +DQ+ I V + K ++ L+ + A++F K +L L R A+ IHGD Q R +VL DFK+G L LVAT VAARG+DI ++ V NYD+P P+ Y+HRIGRTGRAG Sbjct: 1 MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEE----ATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQF--MKAPE-HVKIAAKELTTEL--VDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
BLAST of rna helicase vs. SwissProt
Match: gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA) HSP 1 Score: 263.077 bits (671), Expect = 2.082e-82 Identity = 149/360 (41.39%), Postives = 213/360 (59.17%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGIDKGFGAARDI 362 F LGL ++KA++ G+ TPIQ + IP+ L KD+I AQTGTGKTAAF +PI+E K ++ +V+ALV+APTRELAIQV + + L +YGG D E Q++ L + ++V TPGR++D + + + + +V+DEAD ML+MGF DI+ I+ +P RQ LLFSATM D +R F + E+ V++ A + P I Q+ + V + K +L+ L+ QA + A++F K +L L R A+ IHGD SQA R VL FK G ++ LVAT VAARG+DI ++ V N+D+P P+ Y+HRIGRTGRAG +G+ F R+I Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE----KVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNE--PEL-VKVKAK--EMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG-----KTGVAMTFVTPREI 349
BLAST of rna helicase vs. SwissProt
Match: gi|12644110|sp|P09052.3|VASA1_DROME (RecName: Full=ATP-dependent RNA helicase vasa; AltName: Full=Antigen Mab46F11) HSP 1 Score: 267.7 bits (683), Expect = 4.609e-82 Identity = 157/377 (41.64%), Postives = 230/377 (61.01%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPIL-EMFKDKGELRGKSVRALVLAPTRELAIQV--EANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDR--LPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAGTPELVSSGID--KGFGAARDILEGLSVLEGS 372 F++ L D I+ V GY PTPIQK +IPVI SG+DL+A AQTG+GKTAAF+LPIL ++ +D EL + ++++PTRELAIQ+ EA A+ +L + VYGG Q + + G +++ATPGRLLD + + F++ +V+DEADRMLDMGF D+ +I+ + Q L+FSAT ++++ F + V +A+ I A + Q + V+K K + L ++ EQA D ++F+E K A L S L++++ SIHGDR Q+ RE+ L DFK+G +K L+AT VA+RG+DI + V+NYD+P + DDY+HRIGRTGR G +S D K A D+++ +LEGS Sbjct: 247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIG--IVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVF-VAIGIVG----GACSDVKQTIYEVNKYAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVK---ILEGS 612
BLAST of rna helicase vs. SwissProt
Match: gi|81689748|sp|Q63GX5.1|CSHA_BACCZ (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA) HSP 1 Score: 263.462 bits (672), Expect = 6.642e-82 Identity = 146/341 (42.82%), Postives = 205/341 (60.12%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 F LGL D +L++V++ G+ TPIQ + IP L GKD+I AQTGTGKTAAF LP+L DK + +SV+ +V+APTRELAIQV + +H + L +YGG D Q++ L + I+V TPGR+LD ++ + +E +V+DEAD ML+MGF DI+ I+ +P Q LLFSATM D +R F ++ I V+ P I Q+ + V + K +L+ L+ Q+ + A++F K +L L R A+ IHGD +QA R VL FK G ++ LVAT VAARG+DI ++ V N+D+P P+ Y+HRIGRTGRAG Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL----DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV----TMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
BLAST of rna helicase vs. SwissProt
Match: gi|146291075|sp|Q81IT9.2|CSHA_BACCR (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA) HSP 1 Score: 263.462 bits (672), Expect = 7.150e-82 Identity = 146/341 (42.82%), Postives = 205/341 (60.12%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 F LGL D +L++V++ G+ TPIQ + IP L GKD+I AQTGTGKTAAF LP+L DK + +SV+ +V+APTRELAIQV + +H + L +YGG D Q++ L + I+V TPGR+LD ++ + +E +V+DEAD ML+MGF DI+ I+ +P Q LLFSATM D +R F ++ I V+ P I Q+ + V + K +L+ L+ Q+ + A++F K +L L R A+ IHGD +QA R VL FK G ++ LVAT VAARG+DI ++ V N+D+P P+ Y+HRIGRTGRAG Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL----DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV----TMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
BLAST of rna helicase vs. SwissProt
Match: gi|81696998|sp|Q6HPE6.1|CSHA_BACHK (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA >gi|81715465|sp|Q81VG0.1|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA >gi|134039177|sp|A0R8U6.1|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA) HSP 1 Score: 263.462 bits (672), Expect = 8.137e-82 Identity = 146/341 (42.82%), Postives = 205/341 (60.12%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 F LGL D +L++V++ G+ TPIQ + IP L GKD+I AQTGTGKTAAF LP+L DK + +SV+ +V+APTRELAIQV + +H + L +YGG D Q++ L + I+V TPGR+LD ++ + +E +V+DEAD ML+MGF DI+ I+ +P Q LLFSATM D +R F ++ I V+ P I Q+ + V + K +L+ L+ Q+ + A++F K +L L R A+ IHGD +QA R VL FK G ++ LVAT VAARG+DI ++ V N+D+P P+ Y+HRIGRTGRAG Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL----DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV----TMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
BLAST of rna helicase vs. SwissProt
Match: gi|81700027|sp|Q73EU1.1|CSHA_BACC1 (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA) HSP 1 Score: 263.077 bits (671), Expect = 8.568e-82 Identity = 146/341 (42.82%), Postives = 205/341 (60.12%), Query Frame = 0 Query: 3 FSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 F LGL D +L++V++ G+ TPIQ + IP L GKD+I AQTGTGKTAAF LP+L DK + +SV+ +V+APTRELAIQV + +H + L +YGG D Q++ L + I+V TPGR+LD ++ + +E +V+DEAD ML+MGF DI+ I+ +P Q LLFSATM D +R F ++ I V+ P I Q+ + V + K +L+ L+ Q+ + A++F K +L L R A+ IHGD +QA R VL FK G ++ LVAT VAARG+DI ++ V N+D+P P+ Y+HRIGRTGRAG Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL----DKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFM-TEPQHIKVKAKEV----TMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
BLAST of rna helicase vs. nr
Match: gi|933779692|ref|WP_054340761.1| (DEAD/DEAH box helicase [Neptunomonas antarctica] >gi|1131932376|emb|SIS90452.1| Superfamily II DNA and RNA helicase [Neptunomonas antarctica]) HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0 Identity = 278/350 (79.43%), Postives = 310/350 (88.57%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349 M FSNLGLC+PIL+A++ GYTTPTPIQKQAIP+ILSGKDLIATAQTGTGKTAAFVLPILE+F + LRGK +RAL+L PTRELA+QV ANV AY++HL+LSSLAVYGGVDSE Q QRL+EGVDILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGF DI KIIDRLP ARQNLLFSATM DDVR FSDSK S AVEIS +P AP IDQWLITVDKDTKSALLSHLI +Q W+QALIFIEKKH AAKLV+QLAKR IEAD+IHGD+SQA+REK+LADFKSGKLKYLVATGVAARG+DIG LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S Sbjct: 1 MTFSNLGLCNPILQAIEDSGYTTPTPIQKQAIPIILSGKDLIATAQTGTGKTAAFVLPILEIFNKERTLRGKRIRALILTPTRELAVQVAANVTAYSKHLNLSSLAVYGGVDSEAQKQRLIEGVDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMVDMGFVDDIYKIIDRLPKARQNLLFSATMTDDVRALAFEFSDSKTSNPAVEISTSPISTTAPTIDQWLITVDKDTKSALLSHLINDQQWNQALIFIEKKHGAAKLVAQLAKRGIEADAIHGDKSQAMREKILADFKSGKLKYLVATGVAARGLDIGDLSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350
BLAST of rna helicase vs. nr
Match: gi|738204754|ref|WP_036160671.1| (DEAD/DEAH box helicase [Marinomonas ushuaiensis] >gi|575465316|gb|ETX11047.1| RNA helicase [Marinomonas ushuaiensis DSM 15871]) HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0 Identity = 276/350 (78.86%), Postives = 307/350 (87.71%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349 M FS LGLC PI +A+K GYTTPTPIQKQAIPVI+SGKDLIATAQTGTGKTAAFVLPILE F LRGK VRAL+L PTREL++QVEANVA Y++H++L+S+A+YGGVD+E Q QRL+EGVDILVATPGRLLDL +QRA++FD+LEVLV+DEADRM+DMGF DI+KIIDRLP ARQNLLFSATM DDVR FSD K S+ AVEIS +P KAAP I+QWLITVDKDTKSALLSHLIKEQ WDQALIFIEKKH AAKLV QLAKR IEADSIHGDRSQA+REK+L DFKSGKLKYLVATGVAARGIDIG LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S Sbjct: 1 MLFSKLGLCSPIAQAIKELGYTTPTPIQKQAIPVIMSGKDLIATAQTGTGKTAAFVLPILERFSKVQTLRGKRVRALILTPTRELSVQVEANVALYSKHMNLTSMAIYGGVDTETQKQRLIEGVDILVATPGRLLDLIHQRALHFDKLEVLVLDEADRMVDMGFVGDINKIIDRLPEARQNLLFSATMTDDVRALSYGFSDDKASDQAVEISISPKTKAAPNINQWLITVDKDTKSALLSHLIKEQKWDQALIFIEKKHGAAKLVDQLAKRGIEADSIHGDRSQAMREKILGDFKSGKLKYLVATGVAARGIDIGDLSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350
BLAST of rna helicase vs. nr
Match: gi|655019771|ref|WP_028468725.1| (DEAD/DEAH box helicase [Neptunomonas japonica]) HSP 1 Score: 558.525 bits (1438), Expect = 0.000e+0 Identity = 272/350 (77.71%), Postives = 307/350 (87.71%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349 MPF NLGLC PI++A++ GYT PTPIQKQAIP+ILSGKDLIATAQTGTGKTAAFVLPILE F + LRGK +RAL+L PTRELA+QV ANV Y++HL+LSSLAVYGGVDSE Q QRL+EG+DILVATPGRLLDL++QRA++FDELEVLV+DEADRM+DMGF DI KII+RLP ARQNLLFSATM DDVR FSDSK+S AVEIS +P P I+QWLITVDKDTKSALLSHLI +Q WDQALIFIEKKH AAKLV+QLAKR IEAD+IHGD+SQA+REK+LADFKSGKLKYLVATGVAARG+DIG+LSRVVNYDLPF+P++YIHRIGRTGRAG T E VS Sbjct: 1 MPFLNLGLCKPIVQAIEELGYTAPTPIQKQAIPIILSGKDLIATAQTGTGKTAAFVLPILEAFNKERTLRGKRIRALILTPTRELAVQVAANVEQYSKHLNLSSLAVYGGVDSEVQKQRLIEGIDILVATPGRLLDLSHQRALHFDELEVLVLDEADRMVDMGFVDDIYKIIERLPKARQNLLFSATMTDDVRSIAYDFSDSKMSNPAVEISTSPKASTTPNINQWLITVDKDTKSALLSHLINDQQWDQALIFIEKKHGAAKLVAQLAKRGIEADAIHGDKSQAMREKILADFKSGKLKYLVATGVAARGLDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGSTGEAVS 350
BLAST of rna helicase vs. nr
Match: gi|567429906|ref|WP_024023981.1| (RNA helicase [Marinomonas profundimaris] >gi|566041097|gb|ETI60484.1| RNA helicase [Marinomonas profundimaris]) HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0 Identity = 267/343 (77.84%), Postives = 301/343 (87.76%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 MPFS LGL PI+KA+K GY PTP+Q+QAIP+ILSGKDLIATAQTGTGKTAAFVLP LE F G LRGK +RAL+L PTRELA+QVEANVA Y++HL L+S+AVYGGVD E Q +RL+EGVDILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGF ++ KI+DRLP RQNLLFSATM D VR + FSDSKVS+ A EI+ +P K AP I QWLITVDKDTKSALLSHLIKEQ WDQALIFIEKKH AAKLV+QLAKR IEADSIHGDRSQA+REK+LADFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++Y+HRIGRTGRAG Sbjct: 1 MPFSKLGLSSPIVKAIKELGYKKPTPVQEQAIPIILSGKDLIATAQTGTGKTAAFVLPTLERFNKVGTLRGKRIRALILTPTRELAVQVEANVALYSKHLKLTSMAVYGGVDMEAQKERLIEGVDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMIDMGFAENLYKILDRLPERRQNLLFSATMTDSVRALANEFSDSKVSDQAEEITISPKSKTAPNIKQWLITVDKDTKSALLSHLIKEQEWDQALIFIEKKHGAAKLVAQLAKRGIEADSIHGDRSQAMREKILADFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYVHRIGRTGRAG 343
BLAST of rna helicase vs. nr
Match: gi|1270405578|gb|PHR99071.1| (DEAD/DEAH box helicase [Oceanobacter sp.]) HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0 Identity = 267/350 (76.29%), Postives = 308/350 (88.00%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349 MPFSNLGL PIL+A+ A GY+TPTPIQ QAIPVILSGKDLIATAQTGTGKTAAFVLPILE+F + LRGK +RAL+L PTRELA+QV NVA Y++HL+LSS+AVYGGVD++ Q QRL+ GVDILVATPGRLLDLA+QRA++FDELE+LV+DEADRM+DMGF DI+KII+RLP RQNLLFSAT+ DDV F++SK+ E+A EI+ +P AAP I QWLITVDKDTKSALLSHLIKEQ WDQALIFIEKKH+AAKLV QLAKRDI+AD+IHGD+SQA+RE++LADFKSGKLKYLVATGVAARGIDIG LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S Sbjct: 1 MPFSNLGLSAPILRAIDALGYSTPTPIQNQAIPVILSGKDLIATAQTGTGKTAAFVLPILELFNKERTLRGKRIRALILTPTRELAVQVTNNVAQYSQHLNLSSMAVYGGVDTDAQKQRLIAGVDILVATPGRLLDLAHQRALHFDELEILVLDEADRMVDMGFLGDINKIIERLPPTRQNLLFSATVTDDVLAISDSFANSKMGELAEEITISPHSTAAPSIKQWLITVDKDTKSALLSHLIKEQEWDQALIFIEKKHAAAKLVDQLAKRDIKADAIHGDKSQAMREQILADFKSGKLKYLVATGVAARGIDIGSLSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350
BLAST of rna helicase vs. nr
Match: gi|1182634235|gb|ORU94077.1| (DEAD/DEAH box helicase [Cycloclasticus sp. symbiont of Bathymodiolus heckerae]) HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0 Identity = 268/350 (76.57%), Postives = 305/350 (87.14%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG-TPELVS 349 M FSNLGL +PIL+A+K GY TPTPIQKQAIP+I+SGKDLIATAQTGTGKTA+FVLPILE+F + +LRGK +RAL+L PTRELA+QV AN+A Y +HL LSS+AVYGG+D+EPQ+QRL+EGVDILVATPGRLL LA+QRA++FDELEVLV+DEADRM+DMGF DI KI DRLP RQNLLFSATM+ +VR FS SK+S+ AVEIS +P AP I QWLITVDKDTKS LLSHLI EQ WDQALIFIEKKH AAKLV+QLAKR IEAD IHGDRSQA+REK+LADFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG T E +S Sbjct: 1 MSFSNLGLSNPILQAIKDLGYITPTPIQKQAIPLIISGKDLIATAQTGTGKTASFVLPILEIFNKERQLRGKRIRALILTPTRELAVQVAANIAEYGKHLSLSSMAVYGGIDAEPQVQRLIEGVDILVATPGRLLHLAHQRALHFDELEVLVLDEADRMVDMGFANDIYKITDRLPETRQNLLFSATMSHEVRALADDFSYSKMSKPAVEISISPEATTAPTIKQWLITVDKDTKSTLLSHLINEQKWDQALIFIEKKHGAAKLVAQLAKRGIEADCIHGDRSQAMREKILADFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGATGEAIS 350
BLAST of rna helicase vs. nr
Match: gi|1000090003|gb|KXJ57311.1| (DEAD/DEAH box helicase [Neptuniibacter sp. Phe_28]) HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0 Identity = 268/343 (78.13%), Postives = 300/343 (87.46%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 MPFS LGLC+P+L A+ GYT PTPIQKQAIP+IL+GKDLIATAQTGTGKTAAFVLPILE + LRGK +R L+L PTRELA+QV NVA Y++HL+LSSLAVYGGVDSEPQ QRL+ GVDILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGF DI KII+RLPT RQNLLFSATM+D VR FSDSKVS+ AVEIS +P K A I+QWLITVDKDTKSALLSHLIK+Q WDQALIFIEKKH AAKLV QLAKR I A++IHGDRSQA+REK+L DFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG Sbjct: 1 MPFSTLGLCNPLLLAINDLGYTAPTPIQKQAIPLILAGKDLIATAQTGTGKTAAFVLPILERLNKERTLRGKRIRVLILTPTRELAVQVAGNVAEYSKHLNLSSLAVYGGVDSEPQKQRLIAGVDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMVDMGFADDIHKIIERLPTERQNLLFSATMSDGVRALADDFSDSKVSKPAVEISVSPKTKTAATINQWLITVDKDTKSALLSHLIKDQQWDQALIFIEKKHGAAKLVDQLAKRGIVAEAIHGDRSQAMREKILEDFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAG 343
BLAST of rna helicase vs. nr
Match: gi|1056553454|ref|WP_067985833.1| (DEAD/DEAH box helicase [Neptuniibacter pectenicola]) HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0 Identity = 267/343 (77.84%), Postives = 299/343 (87.17%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 MPFS LGLC+P+L A+ GYT PTPIQKQAIP+IL+GKDLIATAQTGTGKTAAFVLPILE + LRGK +R L+L PTRELA+QV NVA Y++HL+LSSLAVYGGVDSEPQ QRL+ GVDILVATPGRLLDL +QRA++FDELEVLV+DEADRM+DMGF DI KII+RLPT RQNLLFSATM+D VR FSDSKVS+ AVEIS +P K A I+QWLITVDKDTKSALLSHLIK+Q WDQALIFIEKKH AAKLV QLAKR I A++IHGDRSQA+REK+L DFKSGKLKYLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG Sbjct: 1 MPFSTLGLCNPLLLAINDLGYTAPTPIQKQAIPLILAGKDLIATAQTGTGKTAAFVLPILERLNKERTLRGKRIRVLILTPTRELAVQVAGNVAEYSKHLNLSSLAVYGGVDSEPQKQRLIAGVDILVATPGRLLDLTHQRALHFDELEVLVLDEADRMVDMGFADDIHKIIERLPTERQNLLFSATMSDGVRALADDFSDSKVSKPAVEISVSPKTKTAATINQWLITVDKDTKSALLSHLIKDQQWDQALIFIEKKHGAAKLVDQLAKRGIVAEAIHGDRSQAMREKILEDFKSGKLKYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAG 343
BLAST of rna helicase vs. nr
Match: gi|1198998532|ref|WP_087107642.1| (ATP-dependent helicase [Halomonas sp. JB380] >gi|1145422377|emb|SJN12096.1| ATP-dependent RNA helicase VC1407 [Halomonas sp. JB380]) HSP 1 Score: 545.043 bits (1403), Expect = 0.000e+0 Identity = 261/343 (76.09%), Postives = 299/343 (87.17%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 M F+ LGL P+++A+ GY TPTPIQ+QAIP ILSG DLIATAQTGTGKTAAFVLP+LE F G LRGK +RAL+L PTRELA+QVEA+VA YA+HL L+S+AVYGGVDSEPQ QRL+EG+DILVATPGRLLDLA+QRA++FDEL +V+DEADRM+DMGF DI+KII+RLP RQNLLFSATMN DVR FSDSK++++A EIS +P +AA I QWLITVDKDTKSALLSHLI EQAWDQALIFIEKKH AAKLV QLAKR I+ADSIHGDRSQA+REK+LA FKSG+LKYLVATGVAARG+DIG+LSRVVNYDLPFQP++YIHRIGRTGRAG Sbjct: 1 MSFAKLGLSSPLVQAITELGYKTPTPIQEQAIPAILSGNDLIATAQTGTGKTAAFVLPLLERFSTAGTLRGKRIRALILVPTRELAVQVEASVAQYAKHLHLTSMAVYGGVDSEPQKQRLIEGIDILVATPGRLLDLAHQRALHFDELNAMVLDEADRMVDMGFVDDINKIIERLPENRQNLLFSATMNGDVRALAYGFSDSKMTDLASEISISPNIRAAANIKQWLITVDKDTKSALLSHLINEQAWDQALIFIEKKHGAAKLVDQLAKRGIKADSIHGDRSQAMREKILAQFKSGELKYLVATGVAARGLDIGELSRVVNYDLPFQPEEYIHRIGRTGRAG 343
BLAST of rna helicase vs. nr
Match: gi|518449832|ref|WP_019620039.1| (hypothetical protein [Amphritea japonica]) HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0 Identity = 259/343 (75.51%), Postives = 303/343 (88.34%), Query Frame = 0 Query: 1 MPFSNLGLCDPILKAVKAQGYTTPTPIQKQAIPVILSGKDLIATAQTGTGKTAAFVLPILEMFKDKGELRGKSVRALVLAPTRELAIQVEANVAAYAEHLDLSSLAVYGGVDSEPQMQRLVEGVDILVATPGRLLDLAYQRAVYFDELEVLVIDEADRMLDMGFGRDIDKIIDRLPTARQNLLFSATMNDDVREFVSHFSDSKVSEIAVEISATPTKKAAPGIDQWLITVDKDTKSALLSHLIKEQAWDQALIFIEKKHSAAKLVSQLAKRDIEADSIHGDRSQAVREKVLADFKSGKLKYLVATGVAARGIDIGKLSRVVNYDLPFQPDDYIHRIGRTGRAG 343 M F NLGL +PI++A++ GY PTPIQ QAIP++LSGKDLIATAQTGTGKTAAFVLPILE F + LRGK +RAL+L PTRELA+QV A+VA Y+ HL+L+S+AVYGGV++EPQ +RL+EG+DILVATPGRLLDLA+QRA++FDELEVLV+DEADRM+DMGFG +I KIIDRLP ARQNLLFSATM+DDVR FSDSK+S AVE+S +P +A I+QWLITVDKDTKSALLSHLI EQ WDQALIFIEKKH+AAKLV QLAKR I+A++IHGDRSQ +REK+LADFKSGKL+YLVATGVAARGIDIG+LSRVVNYDLPF+P++YIHRIGRTGRAG Sbjct: 1 MTFLNLGLSNPIVQAIEDSGYNAPTPIQTQAIPIVLSGKDLIATAQTGTGKTAAFVLPILENFNQERTLRGKRIRALILTPTRELAVQVAASVAMYSTHLNLTSMAVYGGVNAEPQKERLIEGIDILVATPGRLLDLAHQRALHFDELEVLVLDEADRMVDMGFGEEIRKIIDRLPDARQNLLFSATMSDDVRALAEGFSDSKMSTPAVELSISPKATSASTINQWLITVDKDTKSALLSHLINEQQWDQALIFIEKKHAAAKLVVQLAKRGIKAEAIHGDRSQIMREKILADFKSGKLQYLVATGVAARGIDIGELSRVVNYDLPFKPEEYIHRIGRTGRAG 343 The following BLAST results are available for this feature:
BLAST of rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold2_size2283618:1007362..1012772+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold2_size2283618-processed-gene-10.6 ID=snap_masked-scaffold2_size2283618-processed-gene-10.6|Name=rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=5411bp|location=Sequence derived from alignment at scaffold2_size2283618:1007362..1012772+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'rna helicase' has the following synonyms
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