rna helicase, snap_masked-scaffold2_size2283618-processed-gene-21.11 (gene) Tigriopus kingsejongensis

Overview


Name	rna helicase
Unique Name	snap_masked-scaffold2_size2283618-processed-gene-21.11
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000007141 (supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1 gene:EMLSAG00000007141 transcript:EMLSAT00000007141 description:"maker-LSalAtl2s402-augustus-gene-4.12")

HSP 1 Score: 256.914 bits (655), Expect = 9.586e-80
Identity = 147/378 (38.89%), Postives = 214/378 (56.61%), Query Frame = 0

Query:    3 AETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQ-KLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQA 379
             E   +F+ + L   L++ +   G+E PS IQ ++I  I++G DV+ QAQ+GTGKTA F++ +L  +D      Q LVL+PTRELA+Q+ +        M         GG      IR L  G HVV GTPGRV D +RR TL    +K LVLDEADEML  GF + +  +    P   QIAL SAT+P +I  + +  + DP  I+VK    T E  +Q +  V   + K D L  + +       +IF  TK     L +K+    + V+ + GD+ QK+R+  +++ + G   +++ TDV ARGIDV++V+ VINYD+P++ E Y+HRIGR+GR GR G AI FV   + R+L  IE+    +I+  E+P   A
Sbjct:   24 VEVIPTFDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSIDTTMRETQCLVLSPTRELAVQIQKVLLALGDYM-NVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQIALISATLPHEILEMTSKFMADPIRILVKRDELTLEGXKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDIEQYYSTQID--EMPMNVA 398

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000000846 (supercontig:LSalAtl2s:LSalAtl2s1142:195200:196664:-1 gene:EMLSAG00000000846 transcript:EMLSAT00000000846 description:"augustus_masked-LSalAtl2s1142-processed-gene-1.9")

HSP 1 Score: 249.98 bits (637), Expect = 2.123e-76
Identity = 144/396 (36.36%), Postives = 220/396 (55.56%), Query Frame = 0

Query:    4 ETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGT-LNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKK--RQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTL 396
            E  T+F++L L+  L +  E +G++ PS IQ +AIP+ + G D++G A+TG+GKTAAFALP+L  +         LVL PTRELA Q++E F+     + G   + L GG     Q   L +  H+++ TPGR++DHM      +L +LK L++DEAD +L M F  +V+ IL   P+   R+  LFSATM +++ ++  + L DP  + V  K  T + + Q Y  +    K   L  I+      + IIF  T   T+ LA  L   G+   PL+G + Q +R  ++ + K     I++ATDVA+RG+D+  V  VINYDIP  ++ Y+HR+GRT RAGR+G AI FV   +  +   IE    +K     LP      E+  +    R+++ +
Sbjct:   21 EDTTTFSDLGLTEVLCEACESLGWKTPSKIQKEAIPVALTGRDIIGLAETGSGKTAAFALPVLQSLLEKPQRFFALVLTPTRELAYQISEQFEKLGKSI-GVKCVVLVGGMDMVSQALVLGKKPHIIIATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKILSALPRGEGRKNMLFSATMTKKVAKLQRASLRDPVRVEVSSKYQTVDKLLQYYLFIPLKYKEMYLVHIINELAGNSFIIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKNKSRSILIATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGRAITFVCQYDVELYQRIETLIGKK-----LPLYSGATEEEVMVLGDRVNEAV 410

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000008048 (supercontig:LSalAtl2s:LSalAtl2s479:213954:217803:1 gene:EMLSAG00000008048 transcript:EMLSAT00000008048 description:"maker-LSalAtl2s479-augustus-gene-2.18")

HSP 1 Score: 246.899 bits (629), Expect = 1.861e-72
Identity = 144/376 (38.30%), Postives = 201/376 (53.46%), Query Frame = 0

Query:    9 FNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLL---------SQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTP-------------------------KKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFV 350
            + E  LS  +++++EKVGY  P+PIQ QAIP+ ++  D++G A+TG+GKT AF LPLL         ++M+    G   +++APTRELA Q+ E   T+   + G   + + GG     Q   L+ G  +V+ TPGR++D +    L L     +VLDEAD M+ MGF  DV+ IL+  P                         K RQ  +F+ATMP  ++R+A ++L  P  + +       E + Q   ++    K + L  IL       IIIFV  K     LA  L   GY  A L G   Q+QRE  +  LK G  DI+VATDVA RGID++ V+ VINYD+    E Y HRIGRTGRAG++G AI F 
Sbjct:  326 WKEACLSPEILEIIEKVGYTEPTPIQRQAIPIGLQNRDIIGVAETGSGKTCAFLLPLLVWIQSLPKTTRMEDQDQGPYAIIMAPTRELAQQIEEECNTFGGPL-GIXTVAVIGGLSREDQGFKLRLGCEIVIATPGRLIDVLENRYLVLSRCTYIVLDEADRMIDMGFEPDVQKILDHMPVTNAKPDNDEAENEAALLENIRSKNKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIGRPVERVEQVVYMMKENDKRNKLISILNNGIEPPIIIFVNQKKGADKLAQGLEKMGYNAATLHGGKGQEQREYALSGLKAGNKDILVATDVAGRGIDIKNVSLVINYDMAKSIEPYTHRIGRTGRAGKSGKAISFC 700

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000010143 (supercontig:LSalAtl2s:LSalAtl2s66:712270:714003:-1 gene:EMLSAG00000010143 transcript:EMLSAT00000010143 description:"augustus_masked-LSalAtl2s66-processed-gene-7.1")

HSP 1 Score: 240.736 bits (613), Expect = 1.917e-72
Identity = 132/349 (37.82%), Postives = 204/349 (58.45%), Query Frame = 0

Query:   19 MQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNA------SGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMV-KVKTSTAETIRQRYQIVAGGQK-----LDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRER 355
            M  ++K G+++PSPIQ QA P +++G D++G AQTGTGKT AF LP    +D  +       G  VLVL+PTRELA+Q+A+  + Y  E +G   + +YGG     Q++ + +GV +V+ TPGR+ D +  G + + ++  LVLDEAD ML MGF   +  IL      RQ  + SAT P  ++R+A++++ DP  + +  +  +   ++ Q+  +V   ++     LD    +   ++    IIF+  K    D +  L   G     + G   Q  RE+ +   K G + I++ATDVA+RGIDVE ++HVIN+D P+  E YVHRIGR+GRAG+ G +I F+  R+R
Sbjct:    1 MTAIQKRGFKNPSPIQCQAWPYLLKGLDLIGIAQTGTGKTLAFLLPSFIHIDSQSIPREKRGGPNVLVLSPTRELALQIADEVKKY--EYRGIKSVCVYGGGDRKAQVKVVTQGVQIVIATPGRLNDLIESGCIAVESITYLVLDEADRMLDMGFEPQIRKILLDVRPDRQTVMTSATWPPGVRRLASNYMKDPITVSIGSLDLAAVHSVTQKIFVVESEEEKDDRLLDFFNNMTPEDK---AIIFMSKKAKVDDYSSSLCLAGVDCQSIHGGRDQMDREQALLDFKLGHVRILIATDVASRGIDVEDISHVINFDFPNSMEEYVHRIGRSGRAGKKGSSISFMTYRDR 344

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000006912 (supercontig:LSalAtl2s:LSalAtl2s391:287461:291724:1 gene:EMLSAG00000006912 transcript:EMLSAT00000006912 description:"maker-LSalAtl2s391-augustus-gene-3.7")

HSP 1 Score: 231.106 bits (588), Expect = 7.476e-70
Identity = 136/370 (36.76%), Postives = 212/370 (57.30%), Query Frame = 0

Query:    4 ETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQ-KLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELM 372
            E   SF+++ L   L++ +   G+E PS IQ +AI   ++  D + QAQ+GTGKTA F++ +L ++D++ +  Q L+LAPTRELA Q+ +   +    +K        GG+  +  IR+L+ G H+VVGTPGRV D + R  L    +K  VLDEADEML  GF + +  +     +  Q+ L SATMP  +  +    + DP  I+V+ +  T E I Q Y  V   + KL  L  + E       +IF  T+     L +K+  + + V+ + G++ Q++RE  + + + G   +++ TD+ ARGIDV++++ VINYD+P + E+Y+HRIGR GR GR G AI F+   +R  L  IE+    +IE M
Sbjct:   37 EICESFDDMNLKEDLLRGIYSFGFEKPSAIQQRAIVPCIKTRDAIAQAQSGTGKTATFSIAILQKIDISMNRTQALILAPTRELAQQIQKVVLSLGDFLKA-TCYACIGGRSISSDIRALEHGPHIVVGTPGRVFDMITREHLRTENIKMFVLDEADEMLSRGFKEQIYDVFRHLNQDIQVVLMSATMPDDVLDVTKRFMRDPIRILVRKEELTLEGILQFYVFVEKEEWKLSTLCDLYETLTITQAVIFCNTRRKVCWLTEKMGLKHFTVSSMHGEMSQEEREVIMREFRSGSSRVLITTDLLARGIDVQQISLVINYDLPVNKENYIHRIGRGGRFGRKGVAINFITEGDRMALQDIEKHYHTQIEEM 405

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000011390 (supercontig:LSalAtl2s:LSalAtl2s787:174367:180499:1 gene:EMLSAG00000011390 transcript:EMLSAT00000011390 description:"augustus_masked-LSalAtl2s787-processed-gene-0.30")

HSP 1 Score: 241.121 bits (614), Expect = 1.590e-69
Identity = 137/361 (37.95%), Postives = 208/361 (57.62%), Query Frame = 0

Query:   14 LSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPL----LSQMDLN-ASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGT---LNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRIL-EAEEFGAIIIFV-RTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERA 364
            +S  ++ +L++ GYE P+PIQ QAIP+IM G D++G A+TG+GKT AF LPL    ++Q +L    G   +++ PTREL +Q+ +  + ++  +KG   + +YGG   + QI  LKRG  ++V TPGR++D +   +    N   +  +VLDEAD M  MGF   V  I++     +Q+ +FSAT P+Q++ +A   L  P  + V  ++   + I Q   ++    K   L  +L +    G IIIFV + + A   L D ++A   + A L G V Q  R+  I   K G + I+VAT VAARG+DV+ +  V+NYD P+  E YVHR GRTGRAG +G A  F+ P + R    + +A
Sbjct:  229 VSQRILDLLKRNGYEKPTPIQTQAIPIIMSGRDMIGIAKTGSGKTLAFLLPLFRHIMAQPELEEGDGPIAIIMTPTRELCMQIGKEIKKFSKAIKGARSVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNCRRITYVVLDEADRMFDMGFEPQVSRIIDNCRPDKQMVMFSATFPRQMEALARRILCKPVEVTVGGRSVVCKDIDQSVYVLEEEHKFLKLLELLGQRSSEGLIIIFVDKQEHADSLLKDLMSASYTSCASLHGGVDQYDRDSIITNFKNGKVKILVATSVAARGLDVKELVLVVNYDCPNHYEDYVHRCGRTGRAGNSGFAATFLTPEQGRYAGEVIKA 589

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000005110 (supercontig:LSalAtl2s:LSalAtl2s26:913218:916036:-1 gene:EMLSAG00000005110 transcript:EMLSAT00000005110 description:"maker-LSalAtl2s26-augustus-gene-8.40")

HSP 1 Score: 234.958 bits (598), Expect = 5.708e-69
Identity = 147/411 (35.77%), Postives = 215/411 (52.31%), Query Frame = 0

Query:    9 FNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQM-----------DLNASGVQ---VLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQ----TPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEA----------EEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQR 391
            F ++ ++  +   ++   Y  P+P+Q  AIP I  G D++  AQTG+GKTAAF +P+L+++             N    Q    L+LAPTRELA Q+ +  + +A          +YGG     Q+  L RG H++V TPGR++D + RG ++L   K LVLDEAD ML MGF   +  I+E        +RQ  +FSAT P++I+ +A   L +   + V    ST+E I Q+   V    K   L  +LEA          E+    ++FV T+     L + L   G+ V  + GD  Q++RE  + + + G   I+VAT VAARG+D+  V HVIN+D+P D E YVHRIGRTGR G  G A  F   R R +       TK  +EL+   + Q  N   ++A + R
Sbjct:  182 FMDINMAEIMANNIKLANYSKPTPVQKHAIPAITNGRDLMACAQTGSGKTAAFLVPILNRIFEGGPPQPAPHSKNKRSKQYPMALILAPTRELATQIFDEAKKFAYRSL-VQPCVVYGGANVFEQMMDLDRGCHLLVATPGRLVDMLDRGKISLEQCKYLVLDEADRMLDMGFEPQIRKIVENDNMPPAGQRQTLMFSATFPKEIQMLARDFLANYIFLAVGRVGSTSENITQKIVWVDELDKRSFLLDLLEAAGLAKGPAGNEDSSLTLVFVETRKGADQLDEYLYKEGFPVTSIHGDRTQREREDALRRFRSGNTPILVATAVAARGLDIPNVKHVINFDLPSDVEEYVHRIGRTGRMGNLGLATSFFNDRNRNL-------TKDLVELIVESNQQCPNWLESMALEIR 584

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000011189 (supercontig:LSalAtl2s:LSalAtl2s760:470421:474651:1 gene:EMLSAG00000011189 transcript:EMLSAT00000011189 description:"maker-LSalAtl2s760-augustus-gene-3.33")

HSP 1 Score: 238.039 bits (606), Expect = 7.060e-69
Identity = 137/353 (38.81%), Postives = 200/353 (56.66%), Query Frame = 0

Query:    9 FNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLN-----ASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAE-TIRQRYQIVAGGQKLDVLTRILE---AEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAI-LFVA 351
            F E      +++  ++ G+E P+ IQ+Q  P+ + G +++G A TG+GKT  + LP +  ++         G  VLVLAPTRELA Q+ E    +    +      ++GG P   Q+R L+RG  +V+ TPGR++D +  G +N+     LVLDEAD ML MGF   +  I+EQ    RQ+ ++SAT P++++R+A   L+D  HI +   T  A   I Q   +    QK + L R+LE    E    I+IFV TK    +L   +   GY    + GD  QK+R+  + + K G   I+ ATDVAARG+DV+ V  VINYD P+++E Y+HRIGRTGR  RTG A  LF +
Sbjct:  117 FTEAGFPDYILKEFKRQGFERPTAIQSQGWPIALSGSNMVGIAMTGSGKTCGYLLPGIIHVNNQPYLEEGDGPIVLVLAPTRELAQQIQEVASEFGRTSR-IKSTCIFGGAPKGPQLRDLERGCEIVIATPGRLIDILEMGKINMRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRRLAEDFLDDYVHINIGAATLHANHNILQIVDVCEDFQKEEKLARLLEEIGCEPHNKILIFVETKRKADELTRLMRRDGYPAMCIHGDKQQKERDWVLGEFKHGATTILXATDVAARGLDVDDVKFVINYDYPNNSEDYIHRIGRTGRKDRTGTAYTLFTS 468

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000002581 (supercontig:LSalAtl2s:LSalAtl2s151:1305107:1306803:-1 gene:EMLSAG00000002581 transcript:EMLSAT00000002581 description:"maker-LSalAtl2s151-snap-gene-13.39")

HSP 1 Score: 228.794 bits (582), Expect = 6.419e-68
Identity = 128/354 (36.16%), Postives = 193/354 (54.52%), Query Frame = 0

Query:    8 SFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQM------DLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTS---TAETIRQRYQIVAGGQKLDVLTRILEA---EEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILF 349
            SF E      L++ ++  G+E P+ IQAQ  P+   G +++   +TG+GKT  F LP L  +           G  VL++APTRELA Q+      +A+++       L GG    GQIR L RG  +VV TPGR++D M  G ++L     +VLDEAD ML MGF   +  I+ Q    RQ+ ++SAT P +++ +A+       +  V + +S     + I Q ++     +K+D +  ILE+    E   ++IF  TK+    L  KL    + V  + GD  Q  R R +++ + G ++I+VATDVA+RG+DV  +  VINYD P++ E YVHRIGRTGR  + G +  F
Sbjct:   79 SFQETGFPLGLIERIKSHGFEAPTAIQAQGWPIATNGKNIIAIGETGSGKTLGFVLPGLCHLMRXPPRRNRGDGPVVLIIAPTRELAEQIHNVVDGFASKIP---TACLVGGNHKQGQIRDLNRGAEIVVATPGRLIDLMEDGDVDLKRCSYMVLDEADRMLDMGFEPQIRKIMRQVRPDRQLLMWSATWPSEVQSLAHDFFGGTDYAHVNIGSSELXANKLIMQDFKFCERFEKMDSIKEILESLSEVESKKVLIFAATKIRVDQLVRKLKYWNFVVDGIHGDKTQAMRTRALDKFRSGRINILVATDVASRGLDVNDIKVVINYDFPNNIEDYVHRIGRTGRCSKEGKSFSF 429

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BLAST of rna helicase vs. L. salmonis genes
Match: EMLSAG00000000395 (supercontig:LSalAtl2s:LSalAtl2s1063:103535:105763:1 gene:EMLSAG00000000395 transcript:EMLSAT00000000395 description:"augustus_masked-LSalAtl2s1063-processed-gene-0.12")

HSP 1 Score: 231.491 bits (589), Expect = 5.929e-67
Identity = 129/374 (34.49%), Postives = 210/374 (56.15%), Query Frame = 0

Query:    8 SFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDL--NASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRG-TLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLD---VLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELP 375
            SF  + LS PL++ +E + Y HP+PIQA  IP+ + G DV G A TGTGKTA + LP+L ++    N S  +V+VL PTREL +QV +  +  + +     +    GG     Q  +L++   +V+ TPGR++DH++   T  L  ++ L+LDEAD ML   F++ ++ I++    KRQ  LFSATM  ++  ++   L  P  I V      A  +RQ +  +   ++ D   +L  ++        I+F++TK+    L   L+  G  V  L G++ Q QR  ++++ K+  +D+++ TDVAARG+D+  V  VINY +P   E Y+HR+GRT RAGR G ++      +R+M+  I +  +  ++   +P
Sbjct:  183 SFYAMXLSRPLLKAIEXLRYVHPTPIQASTIPVALAGRDVCGCAATGTGKTAXYMLPILERLLFRPNQSITRVIVLVPTRELGVQVYQVSKQLS-QFTSIDIALSVGGLDLKAQELALRKNPDIVIATPGRLIDHIKNTPTFGLENIEVLILDEADRMLDECFLEQMKEIVKSCSPKRQTLLFSATMTDKVNDLSTMALRKPVKIFVDSNKVVAWNLRQEFVRIRANRESDREGILAALVCRTFRDHTIVFIQTKVQCHRLLILLSLLGVRVGELHGNLSQPQRLESLKKFKEEEIDVLITTDVAARGLDISGVKTVINYTLPTTLEHYIHRVGRTARAGRAGRSVSIAGEGDRKMVREIVKNARDPVKARTVP 555

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BLAST of rna helicase vs. SwissProt
Match: gi|11386733|sp|P57453.1|DEAD_BUCAI (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 523.857 bits (1348), Expect = 3.005e-179
Identity = 282/619 (45.56%), Postives = 396/619 (63.97%), Query Frame = 0

Query:    7 TSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPRE--KRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANRSKSKPNASKGKGG---FTGGGDKRPKRDAKAGSKGSKFKR 620
            ++F+ L L+  ++Q L ++GY  PSPIQA  IPL++EG DVLG AQTG+GKTAAF+LPLL  +++N    Q+LVLAPTRELA+QVAEAF  ++  M G HVLPLYGGQ Y  Q+R+L++G  +VVGTPGR++DH++RGTLNL  L  LVLDEADEMLRMGFI+DVE I+ Q PK+ Q ALFSATMP+ I+RI+   + +P+ I ++   +T   I+Q Y +V  G+K D L R LEAE+F A IIFVRTK AT+++++ L   GY  A L+GD+ Q  RE+T+E+LK G LDI++ATDVAARG+DV+R++ VINYDIP D+ESYVHRIGRTGRAGR G A+LFV  RERR+L +IER  KQ I  ++LP  + + ++R   F +++   L S DL  ++ +L +  + +D+    +AAAL +  QG +P ++       KP         +  +R+SR         D  F+D   RE  +      D     +  E YR+EVG    V+  +IVGAIANE  I+S++IG I +   +S I+LP+GM KD     +   +  + +N+  + D     N++  +   +K K      + G   +     K   K S F+R
Sbjct:    6 STFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQTALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMVY-GRKTDALIRFLEAEDFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKQSIPEVQLPKVELLCQRRLEQFAKKVQQQLESRDLDEYSALLDKLYSTDDLDIKTLAAALLKMAQGERPLII-------KP---------DVIKRQSR---------DLLFQDDRRREDNRNSRTRRDRRDINKDAELYRIEVGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYSTIELPKGMSKDLLQTFNRTRILNKPINMKLLRDSRHYENKTTHRSIFNKDKNSNRRVSDGSFNKSNSPKKTEFKSSFFRR 598

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BLAST of rna helicase vs. SwissProt
Match: gi|614140103|sp|P9WH04.1|DEAD_MYCTO (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A >gi|614140109|sp|P9WH05.1|DEAD_MYCTU RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 519.62 bits (1337), Expect = 3.838e-178
Identity = 275/569 (48.33%), Postives = 377/569 (66.26%), Query Frame = 0

Query:    3 AETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNI 571
            A +A +F +L++   +++ +  VGYE P+ IQA  IP +M G DV+G AQTGTGKTAAFA+P+LS++D+ +   Q LVL PTRELA+QVAEAF  Y A +   +VLP+YGG  Y  Q+  L+RG  VVVGTPGR++DH+ R TL+L  +  LVLDEADEML MGF DDVE IL +TP+ +Q+ALFSATMP  I++++  +L+DP  +  K KT+ AE I Q Y  VA  +K+D LTR+LE E F A+I+FVRTK AT ++A+KL ARG++ A +SGDV Q QRERTI  L+ G +DI+VATDVAARG+DVER++HV+NYDIPHDTESYVHRIGRTGRAGR+G A++FV+PRE  +L +IE+AT+Q +   +LP+ + +N +R   F   I++ L    +  F  ++ E+  E+D+    +AAALA Q +G + F++     +  P                    P SR       DRP R KR P   D+TT       YR+ VG  H + PG IVGAIANE G+     G+I I  DFSL++LP  +P+ T   L+   ++G  +++
Sbjct:    9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALAVQCRGGEAFLM-----APDP--------------------PLSRRNRDQRRDRPQRPKRRP---DLTT-------YRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540

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BLAST of rna helicase vs. SwissProt
Match: gi|25090073|sp|Q8K9H6.1|DEAD_BUCAP (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 520.005 bits (1338), Expect = 1.117e-177
Identity = 276/618 (44.66%), Postives = 403/618 (65.21%), Query Frame = 0

Query:    5 TATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANRSKSKPNASKGKGGFTGGGDKRPKRDA--KAGSKGSKFKR 620
            T ++F+ L L+  +++ L K+GY  PSPIQA  IPL++EG DVLG AQTG+GKTAAF+LPLL  +++N    Q+LVLAPTRELA+QVAEAF  ++  + G HVLPLYGGQ Y  Q+R+L++G  +VVGTPGR++DH++RGTLNL  L  LVLDEADEMLRMGFI+DVE I+ Q PK+ Q ALFSATMP+ I+RI+   + +PQ I ++   +T   I+Q Y +V  G+K D L R LE E+F A IIFV+TK AT+++++ L   GY  A L+GD+ Q  RE+T+E+LK G LDI++ATDVAARG+DV+R++ VINYDIP D+ESYVHRIGRTGRAGR G A+LFV  RERR+L +IER   Q I  ++LP  + + ++R   F +++ + L S DL  ++ +L +  + +D+    +A+AL +  QG +P +++ KD   +P  +   +D + R  ++     R+R + R  +D                    ++ YR+E G    V+  +IVGAIANE  I+S++IG I +   +++++LP+G+ KD    L    +  +K+NI  + D +    R+ ++   +K K       D R  + +  K  +K S F+R
Sbjct:    4 TESTFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQTALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMVY-GRKTDALIRFLEVEDFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTINQTIPEVQLPKIEVLCKRRLERFAKKVQEQLESRDLDEYSALLDKLYSPDDLDIKTLASALLKMAQGGRPLIIK-KDLLQRPSREFSFKD-DRRREDNHRNNNRNRRERRELKD--------------------IDLYRIEAGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYAIVELPKGLSKDLLQRLIKTKILNKKINIKLLRDIKNYETRTHNRSIFNKDKNNKRRFSDNRLNKSSSIKNETKSSFFRR 598

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BLAST of rna helicase vs. SwissProt
Match: gi|1169261|sp|P44586.1|DEAD_HAEIN (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 506.523 bits (1303), Expect = 2.289e-172
Identity = 276/612 (45.10%), Postives = 388/612 (63.40%), Query Frame = 0

Query:    8 SFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTE-FCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANRSKSKPNASKGKGGFTG-----GGDKRPKRDAKAGS 613
            +FN+L L   +++ +  +G+E PSPIQ   IP ++ G+DVLG AQTG+GKTAAFALPLL+Q+D +    Q+LV+APTRELAIQVA+A + +    +G  ++ LYGGQ Y  Q+R+LK+G  VVVGTPGR++DH+RRGTLNL  L+ +VLDEADEMLRMGFIDDVE ++ + P+  Q ALFSATMP+ I+RI    +NDPQ + +KV    A  I Q    V G +K + L R LE E+F A IIF RTK  T+D+ + L   G+  A L+GD+ Q+ RE+T+++L+ G LDI+VATDVAARGID+ER++ V+NYDIP D ESYVHRIGRTGRAGR+G A+LFV PRERR+L +IE   K+ I  +ELP+   + E R   F  +I+  L   DL  + ++L + F A+ D +   +AAA+   +QG Q  +L             P    E R RE  +R  R R+  R+ E R  R+             + M+ YR+EVG    V+  +IVGAIANE  I+S++IG I +++D++ ++LP+GMPK+     +   V  +++ +S +            K + S+G   F G     GGD R +R  + G+
Sbjct:    6 TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQE--NIAAAMLMLLQGKQKLILP------------PDPPMEKRRRERNDRGDR-RENPRSAERRGERKG--------YGNPQPMDLYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFAKTRVLNKQMQMSFL---------GAVKSDNSRGSDDFNGKRKGRGGDFRGERGRERGN 585

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BLAST of rna helicase vs. SwissProt
Match: gi|8928554|sp|P33906.3|DEAD_KLEPN (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 501.516 bits (1290), Expect = 6.869e-170
Identity = 274/579 (47.32%), Postives = 377/579 (65.11%), Query Frame = 0

Query:    3 AETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQV---AAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGE 578
            AE  T+F +L L  P+++ L  +GYE PSPIQA+ IP +++G DVLG AQTG+GKTAAF+LPLL+ +D      Q+LVLAPTRELA+QVAEA   ++  M+G +V+ LYGGQ Y  Q+R+L++G  +VVGTPGR++DH++RGTL+L  L  LVLDEADEMLRMGFI+DVE I+ Q P+  Q ALFSATMP+ I+RI    + +PQ + ++   +T   I Q Y    G +K + L R LEAE+F A IIFVRTK AT+++A+ L   GY  A L+GD+ Q  RE+ +E+LK G LDI++ATDVAARG+DVER++ V+NYDIP D+ESYVHRIGRTGRAGR G A+LFV  RERR+L +IER  K  I  +ELP+ + ++++R   F  ++   L S DL  +  +L +  A  + + + V   AAAL +  QG +  ++         R  R   D   R  +  +R PR    DR  EDRP RE+R     DV      ME YR+EVG +  V+  +IVGAIANE  I S++IG I +    S I+LP+GMP +     +   +  + +N+  + D +
Sbjct:    2 AEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLSKRRLEKFAAKVQQQLESSDLDQYRALLAKIHATAEGEELDVETLAAALLKMAQGERSLIVPPVAPMRPRREFRDRDDSFDRRGDRNDRGPRG---DR--EDRPKRERR-----DVGD----MELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQ 566

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BLAST of rna helicase vs. SwissProt
Match: gi|71154182|sp|P0A9P7.2|DEAD_ECOL6 (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A >gi|71154193|sp|P0A9P6.2|DEAD_ECOLI RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A; AltName: Full=Translation factor W2 >gi|71154222|sp|P0A9P8.2|DEAD_SHIFL RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 489.189 bits (1258), Expect = 2.702e-165
Identity = 270/579 (46.63%), Postives = 372/579 (64.25%), Query Frame = 0

Query:    3 AETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEF--CAENDIQPVQ-VAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGE 578
            AE  T+F +L L  P+++ L  +GYE PSPIQA+ IP ++ G DVLG AQTG+GKTAAF+LPLL  +D      Q+LVLAPTRELA+QVAEA   ++  M+G +V+ LYGGQ Y  Q+R+L++G  +VVGTPGR++DH++RGTL+L  L  LVLDEADEMLRMGFI+DVE I+ Q P+  Q ALFSATMP+ I+RI    + +PQ + ++   +T   I Q Y  V G +K + L R LEAE+F A IIFVRTK AT+++A+ L   GY  A L+GD+ Q  RE+T+E+LK G LDI++ATDVAARG+DVER++ V+NYDIP D+ESYVHRIGRTGRAGR G A+LFV  RERR+L +IER  K  I  +ELP+ + + ++R   F  ++   L S DL  +  +L++    AE +   ++ +AAAL +  QG +  ++           D P R +       RE   R     R+  DR PR  R  R          M+ YR+EVG +  V+  +IVGAIANE  I S++IG I +    S I+LP+GMP +     +   +  + +N+  + D +
Sbjct:    2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVP---------PDAPMRPK-------REFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQ 564

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BLAST of rna helicase vs. SwissProt
Match: gi|32171494|sp|Q8XA87.3|DEAD_ECO57 (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 489.189 bits (1258), Expect = 3.145e-165
Identity = 270/579 (46.63%), Postives = 372/579 (64.25%), Query Frame = 0

Query:    3 AETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEF--CAENDIQPVQ-VAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGE 578
            AE  T+F +L L  P+++ L  +GYE PSPIQA+ IP ++ G DVLG AQTG+GKTAAF+LPLL  +D      Q+LVLAPTRELA+QVAEA   ++  M+G +V+ LYGGQ Y  Q+R+L++G  +VVGTPGR++DH++RGTL+L  L  LVLDEADEMLRMGFI+DVE I+ Q P+  Q ALFSATMP+ I+RI    + +PQ + ++   +T   I Q Y  V G +K + L R LEAE+F A IIFVRTK AT+++A+ L   GY  A L+GD+ Q  RE+T+E+LK G LDI++ATDVAARG+DVER++ V+NYDIP D+ESYVHRIGRTGRAGR G A+LFV  RERR+L +IER  K  I  +ELP+ + + ++R   F  ++   L S DL  +  +L++    AE +   ++ +AAAL +  QG +  ++           D P R +       RE   R     R+  DR PR  R  R          M+ YR+EVG +  V+  +IVGAIANE  I S++IG I +    S I+LP+GMP +     +   +  + +N+  + D +
Sbjct:    2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVP---------PDAPMRPK-------REFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQ 564

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BLAST of rna helicase vs. SwissProt
Match: gi|31340034|sp|Q89AF9.1|DEAD_BUCBP (RecName: Full=ATP-dependent RNA helicase DeaD; AltName: Full=Cold-shock DEAD box protein A)

HSP 1 Score: 480.715 bits (1236), Expect = 2.233e-162
Identity = 263/611 (43.04%), Postives = 383/611 (62.68%), Query Frame = 0

Query:    5 TATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQ-VAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANRSKSKPNASKGKGGFTGGGDKRPKRDAKAGSK 614
            T  +F+   L++ ++  L  +GY  PSPIQA  IP +++G DVLG AQTG+GKTAAFALPLL  + L+    Q+LVL PTRELA+QVAEAF  ++ ++ G HVL LYGGQ Y  Q++SL++G  ++VGTPGR++DH++R TL+L  L +LVLDEADEMLRMGFI+DVE I+ + P + Q ALFSATMP+ I+RI+   + +P+ I ++   +T   I+Q Y +V  G+K D L R LEAE+F A IIFVRTK AT+++++ L   GY  A L+GD+ Q  RE+T+E+LK G LDI++ATDVAARG+DV+R++ VINYDIP D+ESYVHRIGRTGRAGR G A+LFV  RERR+L +IERA    I  + LP +  ++++R   F Q++   L S DL  +  +L +    N+   ++ +AAAL +  QG +  ++            +P      R  + ++    +  +  N+  R  R+K    +VD+         YR++VG    V+  +IVGAIANE  I S+ IG + +  ++S I+LP+G+     N L   ++  + LN  + ++ +++ N        S  KG +    D +     K  SK
Sbjct:    4 TNMTFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQTALFSATMPEAIRRISRRFMKNPKEIRIQSNITTRPDIQQSYWMVY-GKKTDALIRFLEAEDFSATIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISEVNLPKSDFLSKRRLEKFAQKVQIQLDSKDLHEYRGLLPKLQPNNNSLDIESLAAALLKMAQGERSLIV------------KPESIVRARHLKIKDTYRNNNYKSLNYVSRYNRDK----NVDL---------YRIDVGRNDGVEVRHIVGAIANEGDISSRKIGNVRLFSNYSTIELPKGLS----NTLPKTFIRTKILN--KFINIKLLYN--------SNFKGNYNDIKDVKVYNSNKLRSK 574

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BLAST of rna helicase vs. SwissProt
Match: gi|81689748|sp|Q63GX5.1|CSHA_BACCZ (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA)

HSP 1 Score: 400.208 bits (1027), Expect = 4.762e-132
Identity = 206/420 (49.05%), Postives = 281/420 (66.90%), Query Frame = 0

Query:    7 TSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAAL 426
            T+F EL LS  L+Q +E +G+E  +PIQA+ IP  ++G D++GQAQTGTGKTAAF LPLL ++D +   VQ +V+APTRELAIQV E         K   +LP+YGGQ    QIR+LK+  H++VGTPGR++DH+ R TL L  ++T+VLDEADEML MGFI+D+E IL   P+  Q  LFSATMP  I+RIA   + +PQHI VK K  T   I+Q Y  V   +K DVLTR+L+ +     I+F RTK    +L++ L  RGYA   + GD+ Q +R   + + K+G ++++VATDVAARG+D+  VTHV N+DIP D ESYVHRIGRTGRAG+ G A+LFV PRE   L +IER TK+K++ M+ P+     E +     +++  T+ +++L ++  +  E   END   V VAAAL
Sbjct:    2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTV-VAAAL 419

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BLAST of rna helicase vs. SwissProt
Match: gi|81700027|sp|Q73EU1.1|CSHA_BACC1 (RecName: Full=DEAD-box ATP-dependent RNA helicase CshA)

HSP 1 Score: 400.208 bits (1027), Expect = 5.205e-132
Identity = 206/420 (49.05%), Postives = 282/420 (67.14%), Query Frame = 0

Query:    7 TSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAAL 426
            T+F EL LS  L+Q +E +G+E  +PIQA+ IP  ++G D++GQAQTGTGKTAAF LPLL ++D +   VQ +V+APTRELAIQV E         K   +LP+YGGQ    QIR+LK+  H++VGTPGR++DH+ R TL L  ++T+VLDEADEML MGFI+D+E IL   P+  Q  LFSATMP  I+RIA   + +PQHI VK K  T   I+Q Y  V   +K DVLTR+L+ +     I+F RTK    +L++ L  RGYA   + GD+ Q +R   + + K+G ++++VATDVAARG+D+  VTHV N+DIP D ESYVHRIGRTGRAG+ G A+LFV PRE   L +IER TK+K++ M+ P+     E +     +++ +T+ +++L ++  +  E   END   V VAAAL
Sbjct:    2 TTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH-KRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEENDSVTV-VAAAL 419

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BLAST of rna helicase vs. nr
Match: gi|1247361856|gb|PCI23159.1| (ATP-dependent RNA helicase [Thiotrichales bacterium] >gi|1247365253|gb|PCI26441.1| ATP-dependent RNA helicase [Thiotrichales bacterium])

HSP 1 Score: 737.643 bits (1903), Expect = 0.000e+0
Identity = 360/586 (61.43%), Postives = 452/586 (77.13%), Query Frame = 0

Query:    1 MTAETATS--FNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLAS-DDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRP---------TRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRI 574
            MT+ T  +  F +L LS P+++ LE +GYE PSPIQA  IP ++   DV+GQAQTGTGKTAAFALPLLSQ+D+  S  QVLVLAPTRELAIQVAEAFQ YA+ +KGFHV P+YGGQ Y  QIR+LKRGVHVVVGTPGRV DHMRRGTL LG L  LVLDEADEMLRMGF+++VEW+L+QTP  RQI LFSATMP+  ++IA  HLN+P+ I +KVKT+TAE IRQRY +V+G  KLD LTRILEAE F  +IIFVRTK AT +LA+KL ARGYA A L+GD++QKQRERT+ QLKKG LDI++ATDVAARG+DVERV+HVINYDIP+D+E+YVHRIGRTGRAGR+GDAILFVAPRERRML++IERATKQK+E+MELPST+ IN KR   FKQRI+DTLA+ ++L+ +  +L ++  E++I  +++AAALA+  QG    +L+ +   ++ R+             ++R  R+R+S     R R+ DR   DR P+           T++E ME +R+EVGHEH+VKP N++GAIANEAGIDSK+IGR+ I ++ S+IDLP  MPK+ F DL   WV GQ+L I R+
Sbjct:    1 MTSATKNTVQFTDLGLSKPVLEALEVIGYETPSPIQATIIPHVLNNRDVIGQAQTGTGKTAAFALPLLSQIDVRRSETQVLVLAPTRELAIQVAEAFQKYASHIKGFHVAPIYGGQDYGVQIRALKRGVHVVVGTPGRVTDHMRRGTLKLGGLNALVLDEADEMLRMGFVEEVEWVLQQTPDTRQICLFSATMPKVXRQIAQKHLNNPEEITIKVKTTTAENIRQRYWLVSGLHKLDALTRILEAETFDGVIIFVRTKTATAELAEKLRARGYAAAELNGDIIQKQRERTVNQLKKGDLDIVIATDVAARGLDVERVSHVINYDIPYDSEAYVHRIGRTGRAGRSGDAILFVAPRERRMLNTIERATKQKMEMMELPSTEIINNKRIATFKQRITDTLANENELSLYQQILEQYEHEHNIPAIEIAAALAKISQGDNSLLLKKEAKPSRQRNSESDRGDRGGRDRKERNSRDRDSNRPNDRERNSDR---DRKPKRSN-------HTSDEDMESFRIEVGHEHNVKPSNVIGAIANEAGIDSKYIGRLQIFDEHSIIDLPSDMPKEIFTDLKKAWVCGQQLKIKRV 576

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BLAST of rna helicase vs. nr
Match: gi|1058384972|gb|ODB94740.1| (ATP-dependent RNA helicase [Candidatus Thiodiazotropha endoloripes])

HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0
Identity = 364/577 (63.08%), Postives = 441/577 (76.43%), Query Frame = 0

Query:    7 TSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANR 583
            TSFNE  L   L++ L+KVGYE PSPIQAQ IP ++ G D+LG A TGTGKTAAFALPLL++++L    VQV+VL PTRELAIQVAEAFQ YA++MK FHVLP+YGGQ Y  QIR LKRGVHVVVGTPGRVMDHMR+GTL L  ++TLVLDEADEMLRMGFIDDVEWILEQT  +RQIALFSATMP++I+ IA  HLN P  I +K KT+TAETIRQRY +V G  KLD LTRILE E F AIIIFVRTK AT +LA++L+ARGY+ A L+GD+VQKQRE+ +E+LK+G LDI+VATDVAARG+DVER++HVIN+DIP+D ESYVHRIGRTGRAGRTGDAILFVAPRERRML SIE++T+ KI+ + LPST+ +N KR  AFKQRISDTLAS++L F   +L ++  E+D+  + +AAALA+   G +P +L+       P   RP ++ EP  RE  ++  RS  +       PP                GMER+R+EVGHEH+V+PGNIVGAIANEAG+D++HIG IDI  DFSL+DLP GMP + F DL   WV GQ+L ISR+   E  A R
Sbjct:    9 TSFNEFDLPKQLLRALDKVGYETPSPIQAQTIPYLLAGDDLLGHAPTGTGKTAAFALPLLARLNLKLRHVQVMVLTPTRELAIQVAEAFQRYASQMKDFHVLPIYGGQDYGTQIRQLKRGVHVVVGTPGRVMDHMRKGTLKLDNIQTLVLDEADEMLRMGFIDDVEWILEQTNPERQIALFSATMPKEIRHIARRHLNQPHEIAIKSKTATAETIRQRYWLVKGLHKLDALTRILEVEPFDAIIIFVRTKTATTELAERLSARGYSAAALNGDMVQKQREQMVERLKRGALDILVATDVAARGLDVERISHVINFDIPYDAESYVHRIGRTGRAGRTGDAILFVAPRERRMLGSIEKSTRHKIDQLTLPSTETVNNKRIAAFKQRISDTLASEELDFMQGLLEQYQQEHDVPAIDIAAALAKMSLGDKPLLLQ-------PERSRP-KNSEP-SRERSDKRVRSSQKSSAAGSAPP---------------SGMERFRIEVGHEHNVQPGNIVGAIANEAGLDAEHIGHIDIQNDFSLVDLPVGMPHEIFQDLRKAWVCGQRLKISRLAKAEKPAKR 561

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BLAST of rna helicase vs. nr
Match: gi|503915466|ref|WP_014149460.1| (RNA helicase [Methylomicrobium alcaliphilum] >gi|351719023|emb|CCE24697.1| Cold-shock DEAD box protein A homolog [Methylomicrobium alcaliphilum 20Z])

HSP 1 Score: 733.791 bits (1893), Expect = 0.000e+0
Identity = 371/606 (61.22%), Postives = 459/606 (75.74%), Query Frame = 0

Query:    8 SFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANRSKSKPNASKGKGGFTGGGDKRPKRDAKAGS 613
            +F EL L  P+++ L+ VGYE PSPIQAQ IP +M+G DVLGQAQTGTGKTAAFALP+LS++DL  +  QVLVLAPTRELAIQVAEAFQ YAA +KGFHVLP+YGGQ YT Q+R LKRG HV+VGTPGRVMDHMR+GTL LG L  LVLDEADEMLRMGFIDDVEWILEQTPK+RQIALFSATMP  I++IA ++L+DP+ I VKV+TSTAETIRQRY +V+G  KLD LTRILE+E F  IIIFVRTK ATV+LA+KL ARGY+ A ++GD+ Q  RERTI  LK G LDI++ATDVAARG+DVERV+HVINYDIP+DTE+Y+HRIGRTGRAGRTGDAILFVAPRERR+LS+IE+AT+QK+E M LPST+ IN KR   FKQRI+DTLA+++L+FF  ++ ++  E+++  +++AAALA+Q+QG  P ++++           P ++ E RER+       S D++   E +  R+         T  +  ME YR+EVG  H VKPGNIVGAIANE G+D  HI RI I E++S ++LP G+PKD F +L    VAGQ+LNISR+  GE +    K+K            G D + KR  KAGS
Sbjct:   10 TFRELTLIEPVLKALDDVGYESPSPIQAQTIPYLMQGKDVLGQAQTGTGKTAAFALPILSRLDLKKTEPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKRGPHVIVGTPGRVMDHMRKGTLRLGELSCLVLDEADEMLRMGFIDDVEWILEQTPKQRQIALFSATMPAPIRKIAQTYLHDPEEITVKVRTSTAETIRQRYWLVSGVHKLDALTRILESETFDGIIIFVRTKTATVELAEKLEARGYSAAAINGDMSQVLRERTIAHLKNGKLDILIATDVAARGLDVERVSHVINYDIPYDTEAYIHRIGRTGRAGRTGDAILFVAPRERRLLSNIEKATRQKVEEMGLPSTEIINNKRIARFKQRITDTLAAEELSFFIQLMEQYQNEHNVSAIEIAAALAKQVQGETPLLMKNP----------PKKETERRERKD------SIDREYGKERKSKRK---------TNPDIEMETYRIEVGKAHGVKPGNIVGAIANETGLDGDHIARIKIEENYSTVELPAGIPKDIFQELKKVRVAGQQLNISRM--GETLKKTFKAKKR---------DGSDSKRKR-VKAGS 578

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BLAST of rna helicase vs. nr
Match: gi|1247323705|gb|PCH86919.1| (ATP-dependent RNA helicase [Gammaproteobacteria bacterium] >gi|1247326385|gb|PCH89497.1| ATP-dependent RNA helicase [Gammaproteobacteria bacterium])

HSP 1 Score: 733.406 bits (1892), Expect = 0.000e+0
Identity = 366/605 (60.50%), Postives = 455/605 (75.21%), Query Frame = 0

Query:    4 ETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDD-LTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDRE---PRERESRERAPRSRD------------QDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANRSKSKPNASK 592
            E    F +L LS  +++ L+ +GYE PSPIQA  IP ++   DV+GQAQTGTGKTAAFALPLLSQ+D+  +  QVLVL PTRELAIQVAEAFQ YA+ +KGFHV P+YGGQ Y  QIR+LKRGVH+VVGTPGRV DHMRRGTL LG LK LVLDEADEMLRMGF+++VEW+LEQTP  RQI LFSATMP+ I++IA  +LN+P+ I +KVKT+TAE IRQRY +V+G  KLD LTRILEAE F  +IIFVRTK ATV+LADKL ARGYA A L+GD++QKQRERT+ QLKKG LDI++ATDVAARG+DV+RV+HVINYDIP+D E+YVHRIGRTGRAGR+GDAI+FVAPRERRML++IERAT QK+++MELPST+ IN+KR   FKQRI+DTLAS+D L  +  +L ++  E++I  +++AAALA+  QG    +L       K  + RP+R R+   PRER S ER+ R  +            ++ + E +P R            T+E ME +R+EVGHEHDVKP N++GAIANEAGIDSK+IGR+ I +D S+IDLP  MPK+ F DL   WV GQ+L I R+   E   + S SK +  K
Sbjct:    6 ENTPQFTDLGLSKDVLEALKVIGYETPSPIQAAIIPHVLNSRDVIGQAQTGTGKTAAFALPLLSQIDVRRNETQVLVLTPTRELAIQVAEAFQKYASHIKGFHVAPIYGGQDYGVQIRALKRGVHIVVGTPGRVTDHMRRGTLKLGGLKALVLDEADEMLRMGFVEEVEWVLEQTPDTRQICLFSATMPKVIRQIAQKYLNNPEEITIKVKTTTAENIRQRYWLVSGLHKLDALTRILEAETFDGVIIFVRTKTATVELADKLRARGYAAAELNGDIIQKQRERTVNQLKKGDLDIVIATDVAARGLDVQRVSHVINYDIPYDAEAYVHRIGRTGRAGRSGDAIMFVAPRERRMLNTIERATNQKMDIMELPSTEVINDKRIATFKQRITDTLASNDELNLYQQVLEQYQHEHNIPVIEIAAALAKIAQGDSSLLL-------KKETARPSRQRDEHKPRERNSGERSNRGNEHGHGRDRGRDRDRNSDSERKPKRSHH--------ETDEDMESFRIEVGHEHDVKPSNVIGAIANEAGIDSKYIGRLQIFDDHSVIDLPSDMPKEIFMDLKKAWVCGQQLKIKRL--NEKSGSDSSSKQHKPK 593

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BLAST of rna helicase vs. nr
Match: gi|553736618|ref|WP_023070859.1| (RNA helicase [Leptolyngbya sp. Heron Island J] >gi|553086833|gb|ESA38386.1| rna helicase [Leptolyngbya sp. Heron Island J])

HSP 1 Score: 731.48 bits (1887), Expect = 0.000e+0
Identity = 357/596 (59.90%), Postives = 454/596 (76.17%), Query Frame = 0

Query:    1 MTAETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMV--ANRSKSKPNASKGK 594
            M  E A SF+EL LS P+++ LE +GYE P+PIQAQ IP ++ G D++GQAQTGTGKTAAFALPLLS++D+       LVL PTRELAIQVAEAFQ+YA++MKGFHVLPLYGGQ Y+ Q+R L+R VH+VVGTPGRVMDHM+RGTLNL  LK LVLDEADEMLRMGFIDDVEW+LEQTP  RQ+ALFSAT+P++I+RIA  HLNDP  +++K KTSTA+TIRQRY +V+G  KLD LTRILE E F  +I+FVRT+LATV+LA+KL ARGY  APLSGDV Q QRERT++QLK G LDI+VATDVAARG+DV+R++HVINYD+P+DTE+YVHR+GRTGRAGR G+AILFVAPRERR+L +IERATKQKI  MELP+T+ +N KR   FKQ+I+DT+A ++L FF T++ ++  E+++  +++AAALA+ +QG +P +LE +  S      RP R+ + RER  +     S          PP              E+GM RYR+EVGH H VKPG+IVGAIANE+G++S++IGRI+I++  S +DLPEGMPK+    L    +AGQ L ISR V+G++    N  + +P     K
Sbjct:    1 MDVELAPSFSELLLSEPVLKALEGLGYESPTPIQAQTIPHVLAGADIIGQAQTGTGKTAAFALPLLSRVDVKQRLPHTLVLTPTRELAIQVAEAFQSYASQMKGFHVLPLYGGQSYSIQLRQLERSVHIVVGTPGRVMDHMKRGTLNLSELKCLVLDEADEMLRMGFIDDVEWVLEQTPDSRQVALFSATLPKEIRRIAQRHLNDPVEVLIKSKTSTADTIRQRYWMVSGYHKLDALTRILETETFDGMIVFVRTRLATVELAEKLEARGYETAPLSGDVSQMQRERTVDQLKSGKLDIVVATDVAARGLDVDRISHVINYDMPYDTETYVHRVGRTGRAGRKGEAILFVAPRERRLLYAIERATKQKISKMELPTTEMVNNKRIARFKQQITDTIAEENLEFFTTLMEQYEQEHNVPAIEIAAALAKLVQGEEPLLLEERKRS------RPERNNDRRERSHQAERKAS----------PP--------------EQGMGRYRIEVGHRHRVKPGHIVGAIANESGLESRYIGRINIYDSHSTVDLPEGMPKEIMRHLKKVSIAGQPLRISR-VEGDLTGKGNSKRRRPKTKSKK 565

[Close]

BLAST of rna helicase vs. nr
Match: gi|1308663125|gb|PKM36723.1| (ATP-dependent RNA helicase [Gammaproteobacteria bacterium HGW-Gammaproteobacteria-10])

HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0
Identity = 371/607 (61.12%), Postives = 455/607 (74.96%), Query Frame = 0

Query:    8 SFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPR-ERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANRSKSKPNASKGKGGFTGGGDKRPKRDAKAGS 613
            +F EL L  P+++ L+ VGYE PSPIQAQ IP +M+G DVLGQAQTGTGKTAAFALP+LS++DL  +  QVLVLAPTRELAIQVAEAFQ YAA +KGFHVLP+YGGQ YT Q+R LKRG HV+VGTPGRVMDHMR+GTL LG L  LVLDEADEMLRMGFIDDVEWILEQTPK+RQIALFSATMP  I++IA ++L DP+ I VKV+TSTAETIRQRY +V+G  KLD LTRILE+E F  IIIFVRTK ATV+LA+KL ARGY+ A ++GD+ Q  RERTI  LK G LDI++ATDVAARG+DVER++HVINYDIP+DTE+Y+HRIGRTGRAGRTGDAILFVAPRERR+LS+IE+AT+QK+E M LPST+ IN KR   FKQRI+DTLA+++L+FF  ++ ++  E+++  +++AAALA+Q+QG  P +++     N P+ +   R+R+   +RES       R  + + E                     ME YR+EVG  H VKPGNIVGAIANE G+D  HI RI I E++S ++LP GMPKD F +L    VAGQ+LNISR+  GE +    K+K           G   KR K  AKAGS
Sbjct:   10 TFRELALIEPVLKALDDVGYESPSPIQAQTIPHLMQGKDVLGQAQTGTGKTAAFALPILSRLDLKKTEPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKRGPHVIVGTPGRVMDHMRKGTLRLGELSCLVLDEADEMLRMGFIDDVEWILEQTPKQRQIALFSATMPPPIRKIAQTYLQDPEEITVKVRTSTAETIRQRYWLVSGVHKLDALTRILESETFDGIIIFVRTKTATVELAEKLEARGYSAAAINGDMSQVLRERTIAHLKNGKLDILIATDVAARGLDVERISHVINYDIPYDTEAYIHRIGRTGRAGRTGDAILFVAPRERRLLSNIEKATRQKVEEMGLPSTEIINNKRIARFKQRITDTLAAEELSFFIQLMEQYQNEHNVSAIEIAAALAKQVQGETPLLMK-----NPPKKETERRERKDSIDRESGTERKSKRKANPDIE---------------------METYRIEVGKAHGVKPGNIVGAIANETGLDGDHIARIKIEENYSTVELPAGMPKDIFQELKKVRVAGQQLNISRM--GETLKKTFKAKKR--------DGSDSKRKK--AKAGS 578

[Close]

BLAST of rna helicase vs. nr
Match: gi|1247325144|gb|PCH88303.1| (ATP-dependent RNA helicase [Gammaproteobacteria bacterium])

HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0
Identity = 365/605 (60.33%), Postives = 454/605 (75.04%), Query Frame = 0

Query:    4 ETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDD-LTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDRE---PRERESRERAPRSRD------------QDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANRSKSKPNASK 592
            E    F +L LS  +++ L+ +GYE PSPIQA  IP ++   DV+GQAQTGTGKTAAFALPLLSQ+D+  +  QVLVL PTRELAIQVAEAFQ YA+ +KGFHV P+YGGQ Y  QIR+LKRGVH+VVGTPGRV DHMRRGTL LG LK LVLDEADEMLRMGF+++VEW+LEQTP  RQI LFSATMP+ I++IA  +LN+P+ I +KVKT+TAE IRQRY +V+G  KLD LTRILEAE F  +IIFVRTK ATV+LADKL ARGYA A L+GD++QKQRERT+ QLKKG LDI++ATDVAARG+DV+RV+HVINYDIP+D E+YVHRIGRTGRAGR+GDAI+FVAPRERRML++IERAT QK+++MELPST+ IN+KR   FKQRI+DTLAS+D L  +  +L ++  E++I  +++AAALA+  QG    +L       K  + RP+  R+   PRER S ER+ R  +            ++ + E +P R            T+E ME +R+EVGHEHDVKP N++GAIANEAGIDSK+IGR+ I +D S+IDLP  MPK+ F DL   WV GQ+L I R+   E   + S SK +  K
Sbjct:    6 ENTPQFTDLGLSKDVLEALKVIGYETPSPIQAAIIPHVLNSRDVIGQAQTGTGKTAAFALPLLSQIDVRRNETQVLVLTPTRELAIQVAEAFQKYASHIKGFHVAPIYGGQDYGVQIRALKRGVHIVVGTPGRVTDHMRRGTLKLGGLKALVLDEADEMLRMGFVEEVEWVLEQTPDTRQICLFSATMPKVIRQIAQKYLNNPEEITIKVKTTTAENIRQRYWLVSGLHKLDALTRILEAETFDGVIIFVRTKTATVELADKLRARGYAAAELNGDIIQKQRERTVNQLKKGDLDIVIATDVAARGLDVQRVSHVINYDIPYDAEAYVHRIGRTGRAGRSGDAIMFVAPRERRMLNTIERATNQKMDIMELPSTEVINDKRIATFKQRITDTLASNDELNLYQQVLEQYQHEHNIPVIEIAAALAKIAQGDSSLLL-------KKETARPSXQRDEHKPRERNSGERSNRGNEHGHGRDRGRDRDRNSDSERKPKRSHH--------ETDEDMESFRIEVGHEHDVKPSNVIGAIANEAGIDSKYIGRLQIFDDHSVIDLPSDMPKEIFMDLKKAWVCGQQLKIKRL--NEKSGSDSSSKQHKPK 593

[Close]

BLAST of rna helicase vs. nr
Match: gi|1205184066|ref|WP_087870598.1| (ATP-dependent RNA helicase [Bathymodiolus platifrons methanotrophic gill symbiont] >gi|1198320937|dbj|GAW87031.1| ATP-dependent RNA helicase DeaD [Bathymodiolus platifrons methanotrophic gill symbiont])

HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0
Identity = 368/609 (60.43%), Postives = 469/609 (77.01%), Query Frame = 0

Query:    1 MTAETAT--SFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANRSKSKPNASKGKGGFTGGGDKRPKR 607
            MT E ++   F++L L  PL + L++VGYE PSPIQAQ IPLI+EG DVLGQAQTGTGKTAAFALPLLS++DL     QVLVLAPTRELAIQVAEAFQTYA  +KGFHV P+YGGQ Y+GQ+R L+RG HVVVGTPGRVMDHMR+GTL L  L  LVLDEADEMLRMGFIDDVEW+LEQ P++RQIALFSATMP  I+RIAN++L DP+H+ +KVKT+TAETIRQRY  V+G  KLD LTRILEAE F  +IIFVRTK +T++LA+KL ARG++ A ++GD+ Q QRE+TI +LK G LDI+VATDVAARG+DV+R++HVINYDIP+DTE+YVHRIGRTGRAGRTGDAILFVAPRE+RMLS+IERATKQ+IELME+PST+ IN+KR   FKQ+I+DTLA+++L F+  ++ ++  E+D+  ++VAAALA+ +QG +P +L+                   ++ + +ER+ R RD+ R+ E    R K        +  +  M+RYR+EVG +H  KPGNIVGAIANEAG++ K IG+ID+H+DFS++DLP+GMP + F  L    VAGQKLNI+ + +GE+   +  S+ +  K         DK+P+R
Sbjct:    1 MTFEVSSLPKFSDLDLIDPLFKALDEVGYETPSPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPLLSKLDLQQKDPQVLVLAPTRELAIQVAEAFQTYAKFIKGFHVAPIYGGQDYSGQLRMLRRGAHVVVGTPGRVMDHMRKGTLKLNNLTCLVLDEADEMLRMGFIDDVEWVLEQLPEQRQIALFSATMPTAIRRIANNYLRDPEHVTIKVKTTTAETIRQRYWTVSGVHKLDALTRILEAETFDGMIIFVRTKNSTIELAEKLEARGFSAAAINGDLAQNQREKTITKLKNGKLDILVATDVAARGLDVQRISHVINYDIPYDTEAYVHRIGRTGRAGRTGDAILFVAPREKRMLSAIERATKQRIELMEMPSTEMINDKRVNRFKQQITDTLANEELEFYTKIIEQYETEHDVPAIEVAAALAKLVQGDEPLLLK-------------------KQAKVKERSGRDRDRGRDRESGSVRRK------GGSAIQGSMQRYRIEVGKDHGAKPGNIVGAIANEAGLNGKEIGQIDMHDDFSIVDLPKGMPDEVFQGLQATRVAGQKLNIAPVKEGEVPRQQKDSRRSGEK--------SDKKPRR 576

[Close]

BLAST of rna helicase vs. nr
Match: gi|516449801|ref|WP_017838713.1| (RNA helicase [Methylomicrobium buryatense])

HSP 1 Score: 729.939 bits (1883), Expect = 0.000e+0
Identity = 365/580 (62.93%), Postives = 448/580 (77.24%), Query Frame = 0

Query:    8 SFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPTRDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISRIVDGEMVANRSKSK 587
            +F EL L  P+++ L+ VGYE PSPIQAQ IP +M+G DVLGQAQTGTGKTAAFALP+LS++DL  +  QVLVLAPTRELAIQVAEAFQ YAA +KGFHVLP+YGGQ YT Q+R LKRG HV+VGTPGRVMDHMR+GTL LG L  LVLDEADEMLRMGFIDDVEWILEQTPK+RQIALFSATMP  I++IA ++L+DP+ I VKV+TSTAETIRQRY +V+G  KLD LTRILE+E F  IIIFVRTK ATV+LA+KL ARGY+ A ++GD+ Q  RERTI  LK G LDI++ATDVAARG+DVERV+HVINYDIP+DTE+Y+HRIGRTGRAGRTGDAILFVAPRERR+LS+IE+AT+QK+E M LPST+ IN KR   FKQRI+DTLA+++L+FF  ++ ++  E+++  +++AAALA+Q+QG  P +++     N P+          +E E RE     +D   N      + KR P      T +  M+ YR+EVG  H VKPGNIVGAIANE G+D  HI RI I E++S ++LP GMPKD F +L    VAGQ+LNISR+  GE +    K+K
Sbjct:   10 TFRELALIEPVLKALDDVGYESPSPIQAQTIPHLMQGKDVLGQAQTGTGKTAAFALPILSRLDLKKTEPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKRGPHVIVGTPGRVMDHMRKGTLRLGELSCLVLDEADEMLRMGFIDDVEWILEQTPKQRQIALFSATMPAPIRKIAQTYLHDPEEITVKVRTSTAETIRQRYWLVSGVHKLDALTRILESETFDGIIIFVRTKTATVELAEKLEARGYSAAAINGDMSQVLRERTIAHLKNGKLDILIATDVAARGLDVERVSHVINYDIPYDTEAYIHRIGRTGRAGRTGDAILFVAPRERRLLSNIEKATRQKVEEMGLPSTEIINNKRIARFKQRITDTLAAEELSFFIQLMEQYQIEHNVSAIEIAAALAKQVQGETPLLMK-----NPPK----------KESERREH----KDHRENDSGNERKSKRKP------TPDIEMQTYRIEVGKAHGVKPGNIVGAIANETGLDGDHIARIKIEENYSTVELPAGMPKDIFQELKKVRVAGQQLNISRM--GEPLKKSFKAK 562

[Close]

BLAST of rna helicase vs. nr
Match: gi|1200625787|gb|OUX34047.1| (ATP-dependent RNA helicase [Gammaproteobacteria bacterium TMED260])

HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0
Identity = 361/577 (62.56%), Postives = 450/577 (77.99%), Query Frame = 0

Query:    1 MTAETATSFNELKLSTPLMQVLEKVGYEHPSPIQAQAIPLIMEGHDVLGQAQTGTGKTAAFALPLLSQMDLNASGVQVLVLAPTRELAIQVAEAFQTYAAEMKGFHVLPLYGGQPYTGQIRSLKRGVHVVVGTPGRVMDHMRRGTLNLGALKTLVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPQQIKRIANSHLNDPQHIMVKVKTSTAETIRQRYQIVAGGQKLDVLTRILEAEEFGAIIIFVRTKLATVDLADKLAARGYAVAPLSGDVVQKQRERTIEQLKKGGLDIIVATDVAARGIDVERVTHVINYDIPHDTESYVHRIGRTGRAGRTGDAILFVAPRERRMLSSIERATKQKIELMELPSTQAINEKRTVAFKQRISDTLASDDLTFFATMLTEFCAENDIQPVQVAAALAQQMQGAQPFMLEHKDFSNKPRSDRPT----RDREPRERESRERAPRSRDQDRNFEDRPPREKRLPRSVDVTTTEEGMERYRLEVGHEHDVKPGNIVGAIANEAGIDSKHIGRIDIHEDFSLIDLPEGMPKDTFNDLSNCWVAGQKLNISR 573
            MT +T T+F++L+L+ PL++ L+ +GYE P+PIQA+ IPL++ G DVLGQAQTGTGKTAAFALP+LS +DL     Q LVL PTRELAIQV+EAFQTYA + K FHVLP+YGGQ Y GQIR+LKRG HVVVGTPGRVMDHMR+GTL L  L TLVLDEADEMLRMGFIDDVEWILEQTP KRQIALFSATMP +++RIANSHL++P+ + ++ K +TA+ IRQR+  V+G  KLD LTRILEAE F  +I+FVRT++AT +LA+KL+ARG+A   L+GD+ Q QRERTIE+LKKG LDI+VATDVAARG+DV+R++HVINYDIPHDTE+YVHRIGRTGRAGR GDAILFVAPRE+R+L +IERAT  KIE+M LPST+ IN+KR   FKQ ISDTLA+ DL+ +A ++ ++  E++I   +VAAALA   QG  P +L+H+    K +S        RD   R R++    PR+ ++ R  E+   R+K  P        E+GMER+R+EVGH   V PGNIVGAIANEAG+ SK IGRI+I E +S +DLP+GMP D + DL N WVA +KLNI+R
Sbjct:    1 MTTDTVTAFDQLQLAAPLIKTLQDIGYETPTPIQAKTIPLLLSGTDVLGQAQTGTGKTAAFALPILSNLDLKQKNPQALVLCPTRELAIQVSEAFQTYAHKSKSFHVLPVYGGQEYGGQIRALKRGTHVVVGTPGRVMDHMRKGTLKLDELTTLVLDEADEMLRMGFIDDVEWILEQTPPKRQIALFSATMPAEVRRIANSHLSNPEQVTIESKRATADLIRQRFWPVSGTHKLDALTRILEAETFDGMIVFVRTRIATTELAEKLSARGFAATALNGDIAQAQRERTIEKLKKGKLDILVATDVAARGLDVDRISHVINYDIPHDTEAYVHRIGRTGRAGRKGDAILFVAPREKRLLGAIERATGGKIEMMXLPSTELINDKRIAQFKQSISDTLAAXDLSLYAKVIEQYQVEHNIPANEVAAALAHXAQGGSPLLLKHQPTPKKDKSWDKXDKGGRDDRXRSRDNSRDKPRA-NRKRGNEEEIRRKKNAP-------PEKGMERFRIEVGHNEHVMPGNIVGAIANEAGLTSKDIGRINIFESYSTVDLPKGMPNDIYKDLKNTWVAKKKLNITR 569

The following BLAST results are available for this feature:

BLAST of rna helicase vs. L. salmonis genes
BLAST of rna helicase vs. SwissProt
BLAST of rna helicase vs. nr

BLAST of rna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000007141	9.586e-80	38.89	supercontig:LSalAtl2s:LSalAtl2s402:374905:376772:1...	[more]
EMLSAG00000000846	2.123e-76	36.36	supercontig:LSalAtl2s:LSalAtl2s1142:195200:196664:...	[more]
EMLSAG00000008048	1.861e-72	38.30	supercontig:LSalAtl2s:LSalAtl2s479:213954:217803:1...	[more]
EMLSAG00000010143	1.917e-72	37.82	supercontig:LSalAtl2s:LSalAtl2s66:712270:714003:-1...	[more]
EMLSAG00000006912	7.476e-70	36.76	supercontig:LSalAtl2s:LSalAtl2s391:287461:291724:1...	[more]
EMLSAG00000011390	1.590e-69	37.95	supercontig:LSalAtl2s:LSalAtl2s787:174367:180499:1...	[more]
EMLSAG00000005110	5.708e-69	35.77	supercontig:LSalAtl2s:LSalAtl2s26:913218:916036:-1...	[more]
EMLSAG00000011189	7.060e-69	38.81	supercontig:LSalAtl2s:LSalAtl2s760:470421:474651:1...	[more]
EMLSAG00000002581	6.419e-68	36.16	supercontig:LSalAtl2s:LSalAtl2s151:1305107:1306803...	[more]
EMLSAG00000000395	5.929e-67	34.49	supercontig:LSalAtl2s:LSalAtl2s1063:103535:105763:...	[more]

Pages

BLAST of rna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|11386733\|sp\|P57453.1\|DEAD_BUCAI	3.005e-179	45.56	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|614140103\|sp\|P9WH04.1\|DEAD_MYCTO	3.838e-178	48.33	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|25090073\|sp\|Q8K9H6.1\|DEAD_BUCAP	1.117e-177	44.66	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|1169261\|sp\|P44586.1\|DEAD_HAEIN	2.289e-172	45.10	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|8928554\|sp\|P33906.3\|DEAD_KLEPN	6.869e-170	47.32	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|71154182\|sp\|P0A9P7.2\|DEAD_ECOL6	2.702e-165	46.63	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|32171494\|sp\|Q8XA87.3\|DEAD_ECO57	3.145e-165	46.63	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|31340034\|sp\|Q89AF9.1\|DEAD_BUCBP	2.233e-162	43.04	RecName: Full=ATP-dependent RNA helicase DeaD; Alt...	[more]
gi\|81689748\|sp\|Q63GX5.1\|CSHA_BACCZ	4.762e-132	49.05	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]
gi\|81700027\|sp\|Q73EU1.1\|CSHA_BACC1	5.205e-132	49.05	RecName: Full=DEAD-box ATP-dependent RNA helicase ...	[more]

Pages

BLAST of rna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1247361856\|gb\|PCI23159.1\|	0.000e+0	61.43	ATP-dependent RNA helicase [Thiotrichales bacteriu...	[more]
gi\|1058384972\|gb\|ODB94740.1\|	0.000e+0	63.08	ATP-dependent RNA helicase [Candidatus Thiodiazotr...	[more]
gi\|503915466\|ref\|WP_014149460.1\|	0.000e+0	61.22	RNA helicase [Methylomicrobium alcaliphilum] >gi\|3...	[more]
gi\|1247323705\|gb\|PCH86919.1\|	0.000e+0	60.50	ATP-dependent RNA helicase [Gammaproteobacteria ba...	[more]
gi\|553736618\|ref\|WP_023070859.1\|	0.000e+0	59.90	RNA helicase [Leptolyngbya sp. Heron Island J] >gi...	[more]
gi\|1308663125\|gb\|PKM36723.1\|	0.000e+0	61.12	ATP-dependent RNA helicase [Gammaproteobacteria ba...	[more]
gi\|1247325144\|gb\|PCH88303.1\|	0.000e+0	60.33	ATP-dependent RNA helicase [Gammaproteobacteria ba...	[more]
gi\|1205184066\|ref\|WP_087870598.1\|	0.000e+0	60.43	ATP-dependent RNA helicase [Bathymodiolus platifro...	[more]
gi\|516449801\|ref\|WP_017838713.1\|	0.000e+0	62.93	RNA helicase [Methylomicrobium buryatense]	[more]
gi\|1200625787\|gb\|OUX34047.1\|	0.000e+0	62.56	ATP-dependent RNA helicase [Gammaproteobacteria ba...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold2_size2283618	supercontig	scaffold2_size2283618:2137441..2139303 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold2_size2283618-processed-gene-21.11-mRNA-1	snap_masked-scaffold2_size2283618-processed-gene-21.11-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold2_size2283618:2137441..2139303+

gene from alignment at scaffold2_size2283618:2137441..2139303+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold2_size2283618-processed-gene-21.11 ID=snap_masked-scaffold2_size2283618-processed-gene-21.11|Name=rna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1863bp|location=Sequence derived from alignment at scaffold2_size2283618:2137441..2139303+ (Tigriopus kingsejongensis)
ATGACTGCCGAAACGGCCACATCTTTTAACGAGCTCAAGCTCAGTACCCC
ATTAATGCAGGTACTTGAGAAGGTGGGCTACGAACATCCTTCGCCGATAC
AGGCGCAGGCAATTCCGCTGATCATGGAAGGGCACGACGTGCTCGGCCAG
GCGCAAACAGGTACCGGTAAAACGGCCGCCTTTGCATTGCCGCTATTGTC
GCAAATGGATCTAAACGCCAGCGGAGTTCAAGTGTTGGTGCTAGCACCGA
CCCGTGAGCTTGCCATCCAAGTGGCGGAAGCTTTCCAAACCTACGCTGCT
GAGATGAAAGGCTTCCATGTATTGCCTCTCTATGGTGGCCAACCTTACAC
CGGTCAGATCCGTTCCCTAAAACGTGGTGTTCACGTTGTCGTGGGTACGC
CTGGTCGAGTGATGGACCACATGCGTCGTGGCACATTGAATCTGGGCGCT
CTGAAGACTTTGGTCTTGGATGAAGCCGATGAAATGTTGCGTATGGGCTT
CATCGATGATGTCGAATGGATCCTTGAGCAGACGCCTAAAAAACGGCAGA
TTGCACTCTTCTCGGCGACGATGCCACAGCAGATCAAGCGCATCGCCAAC
TCGCACCTGAACGATCCTCAGCACATCATGGTGAAGGTGAAAACCAGTAC
CGCTGAAACTATTCGTCAGCGATACCAGATTGTCGCGGGCGGGCAGAAGC
TCGACGTGTTGACTCGTATTCTTGAAGCCGAAGAGTTTGGCGCGATCATC
ATCTTTGTGCGCACGAAATTGGCCACAGTTGATTTAGCCGACAAGCTGGC
TGCACGCGGTTATGCCGTGGCGCCACTGAGCGGCGATGTCGTGCAGAAGC
AGCGCGAGCGCACCATTGAACAACTGAAGAAAGGCGGCCTCGATATTATA
GTGGCGACGGACGTCGCGGCACGTGGTATCGACGTTGAGCGTGTTACTCA
CGTCATCAACTACGATATTCCGCACGATACAGAGTCTTACGTGCACCGTA
TTGGCCGTACTGGTCGTGCAGGACGCACCGGTGACGCAATCTTGTTTGTG
GCGCCGCGTGAGCGTCGCATGCTGTCTTCTATCGAGCGCGCCACCAAGCA
AAAAATCGAGCTGATGGAATTGCCTTCCACACAGGCGATTAACGAAAAAC
GCACGGTTGCTTTCAAACAGCGTATTTCGGACACCTTGGCAAGCGATGAC
CTGACCTTCTTCGCCACGATGCTCACAGAGTTTTGTGCTGAAAACGATAT
TCAGCCCGTGCAAGTAGCTGCAGCCTTGGCGCAGCAGATGCAGGGCGCAC
AGCCGTTCATGCTCGAGCACAAAGACTTCAGTAACAAACCGCGCAGTGAC
CGTCCGACCCGTGATCGCGAGCCACGTGAGCGCGAATCGAGAGAACGTGC
ACCGCGTAGCCGGGATCAGGATCGCAACTTCGAAGATCGTCCTCCGCGTG
AGAAGCGTTTGCCGCGTTCAGTGGATGTCACCACCACTGAAGAAGGCATG
GAGCGTTACCGCCTAGAAGTGGGTCACGAGCACGATGTGAAGCCGGGCAA
TATCGTCGGCGCGATTGCAAACGAAGCGGGCATTGATAGCAAGCATATCG
GTCGCATCGATATCCACGAAGATTTCAGCTTGATTGATTTGCCGGAAGGC
ATGCCTAAGGACACTTTTAATGACCTGTCCAATTGCTGGGTTGCAGGGCA
GAAGCTGAATATTTCGCGCATAGTGGATGGCGAGATGGTGGCAAACCGGT
CCAAGAGCAAGCCTAACGCCAGTAAGGGCAAGGGCGGCTTCACCGGCGGT
GGCGATAAGCGACCAAAGCGCGACGCCAAAGCTGGATCGAAAGGTAGCAA
GTTTAAGCGCTAG

Synonyms

The feature 'rna helicase' has the following synonyms


Synonym
Tk00090

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