AGAP005117-PA, snap_masked-scaffold322_size207131-processed-gene-1.11 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of AGAP005117-PA vs. L. salmonis genes
Match: EMLSAG00000011310 (supercontig:LSalAtl2s:LSalAtl2s77:328780:331049:1 gene:EMLSAG00000011310 transcript:EMLSAT00000011310 description:"maker-LSalAtl2s77-augustus-gene-3.16") HSP 1 Score: 92.8189 bits (229), Expect = 2.675e-23 Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 0 Query: 50 RSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKSHQSKP 138 RS+++GN+DY A ++E HF G I RVTI N+ G K FA++EFA K++ A+A++++L RGR IKV P R N+PG+ S +P Sbjct: 82 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYVEFADKDSVSTAMALDDSLFRGRQIKVMPKRTNKPGISSTHRRP 171
BLAST of AGAP005117-PA vs. L. salmonis genes
Match: EMLSAG00000008230 (supercontig:LSalAtl2s:LSalAtl2s496:50959:123619:1 gene:EMLSAG00000008230 transcript:EMLSAT00000008230 description:"maker-LSalAtl2s496-augustus-gene-1.5") HSP 1 Score: 91.2781 bits (225), Expect = 1.130e-22 Identity = 51/126 (40.48%), Postives = 76/126 (60.32%), Query Frame = 0 Query: 119 IKVTPMRLNRPGMKSHQSKPLCQVVVQGCKAKAEDFRMELRSSSTRVVLKWVEWKTAGNYRCEVTADD--FETVSESKDSEVVAVPLAGPTITGQQTRYALGDIVKLNCTSNSSDPLADIFWYINS 242 IK+ +++ P + + C ++G + +++ RSSS +V LK V W T GNY+CEVTA ++TV S + +V GPTITG++ RY GD+V+LNC+SNSS P ++ WYINS Sbjct: 32 IKMYNLKVPDPLILGSAADLYCDYDMEGSQLYSKE-----RSSSRKVRLKVVRWSTEGNYKCEVTAGKPYYDTVVNSSIARIV-----GPTITGRRDRYTSGDLVELNCSSNSSKPATELSWYINS 147
BLAST of AGAP005117-PA vs. L. salmonis genes
Match: EMLSAG00000008718 (supercontig:LSalAtl2s:LSalAtl2s53:973559:992430:-1 gene:EMLSAG00000008718 transcript:EMLSAT00000008718 description:"augustus_masked-LSalAtl2s53-processed-gene-10.2") HSP 1 Score: 76.6406 bits (187), Expect = 8.509e-17 Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = 0 Query: 159 RSSSTRVVLKWVEWKTAGNYRCEVT--ADDFETVSESKDSEVVAVPLAGPTITGQQTRYALGDIVKLNCTSNSSDPLADIFWYINSE 243 RS R+ L+ + K+ G YRCEV+ A F TVS D VV +P GP I G + RY GD V +NCTS S P A++ W IN E Sbjct: 77 RSDEFRITLRNLNLKSTGRYRCEVSTEAPTFATVSSYGDMIVVVIPSNGPKIHGGKVRYRPGDAVNVNCTSRKSKPAANLDWSINGE 163
BLAST of AGAP005117-PA vs. L. salmonis genes
Match: EMLSAG00000010864 (supercontig:LSalAtl2s:LSalAtl2s722:19599:190212:-1 gene:EMLSAG00000010864 transcript:EMLSAT00000010864 description:"maker-LSalAtl2s722-snap-gene-1.8") HSP 1 Score: 73.9442 bits (180), Expect = 5.776e-16 Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0 Query: 160 SSSTRVVLKWVEWKTAGNYRCEVT--ADDFETVSESKDSEVVAVPLAGPTITGQQTRYALGDIVKLNCTSNSSDPLADIFWYINSE 243 S+ T V+L+ V+ T G +RCEV+ A F+T + V+ +P GP ITG RY +GD V++NCTS S P A + WYIN E Sbjct: 97 STETSVLLRNVDLNTTGKFRCEVSGEAPSFQTAYQDAILAVIDLPDDGPIITGGFPRYHIGDRVEVNCTSYRSKPAAKLKWYINGE 182
BLAST of AGAP005117-PA vs. L. salmonis genes
Match: EMLSAG00000002653 (supercontig:LSalAtl2s:LSalAtl2s153:1109508:1222125:-1 gene:EMLSAG00000002653 transcript:EMLSAT00000002653 description:"maker-LSalAtl2s153-augustus-gene-11.4") HSP 1 Score: 65.855 bits (159), Expect = 7.812e-13 Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 0 Query: 157 ELRSSSTRVVLKWVEWKTAGNYRCEVTAD-DFETVSESKDSEVVAVPLAGPTITGQQTRYALGDIVKLNCTSNSSDPLADIFWYINSE 243 E +S+ + L V ++ +G Y CEV AD F T+ ++K+ V+ +P P ITG + +Y +GD + CTS S P A++ W+IN E Sbjct: 95 EEKSTGETLFLHSVNFENSGAYSCEVIADITFHTLIQTKEMLVIDLPDERPRITGVKDKYRIGDTITATCTSWQSHPPANLTWFINGE 182
BLAST of AGAP005117-PA vs. L. salmonis genes
Match: EMLSAG00000007638 (supercontig:LSalAtl2s:LSalAtl2s442:555696:556660:-1 gene:EMLSAG00000007638 transcript:EMLSAT00000007638 description:"snap_masked-LSalAtl2s442-processed-gene-5.4") HSP 1 Score: 60.8474 bits (146), Expect = 2.027e-11 Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 0 Query: 142 VVVQGCKAKAEDFRMELRSSSTRVVLKWVEWKTAGNYRCEVTADD--FETVSESKDSEVVAVPLAGPTITG-QQTRYALGDIVKLNCTSNSSDPLADIFWYINSE 243 V+V G D + RS+S V LK ++ +G Y CE +++ F+T+S + E++ +P + P I+G + Y +G + +NCTS +S P A + WYIN+E Sbjct: 52 VLVFGVSGIIVDVK---RSNSLVVTLKDLQLSCSGTYTCEASSEGPRFKTISGQGEMEILDLPDSEPIISGINASGYKVGSWLNVNCTSPNSKPAAKLNWYINNE 153
BLAST of AGAP005117-PA vs. L. salmonis genes
Match: EMLSAG00000001042 (supercontig:LSalAtl2s:LSalAtl2s1172:23884:25117:-1 gene:EMLSAG00000001042 transcript:EMLSAT00000001042 description:"maker-LSalAtl2s1172-augustus-gene-0.30") HSP 1 Score: 57.7658 bits (138), Expect = 5.464e-10 Identity = 27/87 (31.03%), Postives = 50/87 (57.47%), Query Frame = 0 Query: 45 RASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNRQ-GMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMR-LNRP 129 + ++++F+GNLD++ ++ HF G + + + ++ G+ K F F+ F + +NAL +N T ++GR I+V MR NRP Sbjct: 203 KVDQKKAVFVGNLDFSVNEEELRSHFLVCGAVSNIRLVRDKSTGIGKGFGFINFMDSDGVLNALELNHTELKGRKIRV--MRSSNRP 287
BLAST of AGAP005117-PA vs. L. salmonis genes
Match: EMLSAG00000003689 (supercontig:LSalAtl2s:LSalAtl2s1:1730505:1794660:1 gene:EMLSAG00000003689 transcript:EMLSAT00000003689 description:"augustus_masked-LSalAtl2s1-processed-gene-18.0") HSP 1 Score: 57.3806 bits (137), Expect = 5.736e-10 Identity = 26/71 (36.62%), Postives = 42/71 (59.15%), Query Frame = 0 Query: 175 AGNYRCEVTAD--DFETVSESKDSEVVAVPLAGPTITGQQTRYALGDIVKLNCTSNSSDPLADIFWYINSE 243 +G Y CE+T + F T +++ + V+ P P I G + Y GD+V++NCTS+ S P A + W++N E Sbjct: 104 SGQYSCEITIETPSFRTYNKTSNLTVIVPPKFPPKIKGINSSYRSGDLVEINCTSSDSKPAAKLTWFMNGE 174
BLAST of AGAP005117-PA vs. L. salmonis genes
Match: EMLSAG00000004571 (supercontig:LSalAtl2s:LSalAtl2s238:731450:732235:-1 gene:EMLSAG00000004571 transcript:EMLSAT00000004571 description:"maker-LSalAtl2s238-augustus-gene-7.21") HSP 1 Score: 51.9878 bits (123), Expect = 2.314e-8 Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 0 Query: 159 RSSSTRVVLKWVEWKTAGNYRCEVTAD--DFETVSESKDSEVVAVPLAGPTITGQQTRYALGDIVKLNCTSNSSDPLADIFWYINSE 243 +S+ V L + ++ G Y+CEV+A+ +F T S +D VV VP + I G + Y +GD V + C S S P A + W IN + Sbjct: 2 KSNKQHVHLTNLSLESTGTYKCEVSAEAPNFRTKSAHQDMVVVVVPESA-EIVGTRPMYFVGDTVNVTCYSYKSRPSASLSWRINGQ 87
BLAST of AGAP005117-PA vs. L. salmonis genes
Match: EMLSAG00000005472 (supercontig:LSalAtl2s:LSalAtl2s294:325441:341252:1 gene:EMLSAG00000005472 transcript:EMLSAT00000005472 description:"maker-LSalAtl2s294-augustus-gene-4.24") HSP 1 Score: 51.9878 bits (123), Expect = 3.382e-8 Identity = 42/121 (34.71%), Postives = 55/121 (45.45%), Query Frame = 0 Query: 128 RPGMKSHQSKPLCQVV----VQGCKAKAEDFRMELRSSSTRVVLKWVEWKTAGNYRCEVTADDFETVSESKDSEVVAVPLAGPTITGQQTR--YALGDIVKLNCTSNSSDPLADIFWYINS 242 R G K + P + V G K E R E V+LK V +K+ G YRCEVTA V K+ +P PTI G + + Y GD + L CTS S+P A + W +N Sbjct: 91 RGGFKERKLDPHDDSIQTWKVSGIKIDIEKSRPE------EVILKRVGFKSTGMYRCEVTA-----VVRKKE-----LPKQLPTILGGEIKRTYKPGDFLNLTCTSAPSNPPAKLQWILNG 195
BLAST of AGAP005117-PA vs. SwissProt
Match: gi|75335607|sp|Q9LX90.1|PABN3_ARATH (RecName: Full=Polyadenylate-binding protein 3; Short=AtPabN2; Short=AtPabN3; Short=Poly(A)-binding protein 3; AltName: Full=Nuclear poly(A)-binding protein 3; AltName: Full=Poly(A)-binding protein III; Short=PABIII) HSP 1 Score: 100.138 bits (248), Expect = 1.642e-24 Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 0 Query: 34 PSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNRQGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKSHQ 135 P+S+ AN EGK RS+++GN+DYA +V+LHF G + RVTI ++ G K FA++EF EA AL +NE+ + GR +KV+P R N PGMK + Sbjct: 73 PASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYH 174
BLAST of AGAP005117-PA vs. SwissProt
Match: gi|75009760|sp|Q7KNF2.1|PABP2_DROME (RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2; Short=Poly(A)-binding protein 2; Short=dPABP2; AltName: Full=Nuclear poly(A)-binding protein 1; AltName: Full=Poly(A)-binding protein II; Short=PABII; AltName: Full=Polyadenylate-binding nuclear protein 1; AltName: Full=Protein rox2) HSP 1 Score: 94.7449 bits (234), Expect = 2.094e-22 Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0 Query: 50 RSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKS 133 RS+++GN+DY A ++E HF G I RVTI N+ G K FA++EF SKE ALAMNETL RGR IKV R NRPG+ + Sbjct: 96 RSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLST 180
BLAST of AGAP005117-PA vs. SwissProt
Match: gi|109892812|sp|Q28ZX3.1|PABP2_DROPS (RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2; Short=Poly(A)-binding protein 2; AltName: Full=Nuclear poly(A)-binding protein 1; AltName: Full=Poly(A)-binding protein II; Short=PABII; AltName: Full=Polyadenylate-binding nuclear protein 1) HSP 1 Score: 93.9745 bits (232), Expect = 3.718e-22 Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0 Query: 50 RSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKS 133 RS+++GN+DY A ++E HF G I RVTI N+ G K FA++EF SKE ALAMNETL RGR IKV R NRPG+ + Sbjct: 96 RSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLST 180
BLAST of AGAP005117-PA vs. SwissProt
Match: gi|75333962|sp|Q9FJN9.1|PABN2_ARATH (RecName: Full=Polyadenylate-binding protein 2; Short=AtPabN2; Short=AtPabN3; Short=Poly(A)-binding protein 2; AltName: Full=Nuclear poly(A)-binding protein 2; AltName: Full=Poly(A)-binding protein II; Short=PABII) HSP 1 Score: 92.0485 bits (227), Expect = 2.376e-21 Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 0 Query: 34 PSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNRQGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKSHQSK 137 P+S+ AN GK RS+F+GN+DYA +V+ HF G + RVTI T++ G K FA++EF EA AL +NE+ + GR +KV R N PG+K + + Sbjct: 76 PASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 179
BLAST of AGAP005117-PA vs. SwissProt
Match: gi|82238228|sp|Q6TY21.1|EPA2B_XENLA (RecName: Full=Embryonic polyadenylate-binding protein 2-B; Short=Embryonic poly(A)-binding protein 2-B; Short=XePABP2-B; Short=ePABP-2B; Short=ePABP2-B; AltName: Full=Embryonic poly(A)-binding protein type II-B) HSP 1 Score: 88.5817 bits (218), Expect = 3.817e-20 Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 0 Query: 29 EASPFPSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKS 133 E P P S +E K+ +RS+++GN+DY + D+E HF+ G I R+TI ++ G K +A++EFA + + A+AM+ET+ RGR IKV P R N PG+ S Sbjct: 76 EGPPQPLS----AEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISS 177
BLAST of AGAP005117-PA vs. SwissProt
Match: gi|82237242|sp|Q6NVP7.1|PABP2_XENTR (RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2; Short=Poly(A)-binding protein 2; AltName: Full=Nuclear poly(A)-binding protein 1; AltName: Full=Poly(A)-binding protein II; Short=PABII; AltName: Full=Polyadenylate-binding nuclear protein 1) HSP 1 Score: 88.9669 bits (219), Expect = 1.269e-19 Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 0 Query: 50 RSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKS 133 RSI++GN+DY A ++E HF G + RVTI ++ G K FA++EF+ KE+ +LA++E+L RGR IKV P R NRPG+ + Sbjct: 163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIST 247
BLAST of AGAP005117-PA vs. SwissProt
Match: gi|82241535|sp|Q7ZXB8.1|PAB2B_XENLA (RecName: Full=Polyadenylate-binding protein 2-B; Short=PABP-2-B; Short=Poly(A)-binding protein 2-B; AltName: Full=Nuclear poly(A)-binding protein 1-B; AltName: Full=Poly(A)-binding protein II-B; Short=PABII-B; AltName: Full=Polyadenylate-binding nuclear protein 1-B; AltName: Full=XLnPABP2-B; AltName: Full=nPABP2-B; AltName: Full=xPABPII-B) HSP 1 Score: 88.5817 bits (218), Expect = 1.385e-19 Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 0 Query: 50 RSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKS 133 RSI++GN+DY A ++E HF G + RVTI ++ G K FA++EF+ KE+ +LA++E+L RGR IKV P R NRPG+ + Sbjct: 162 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIST 246
BLAST of AGAP005117-PA vs. SwissProt
Match: gi|82247012|sp|Q9DDY9.1|PAB2A_XENLA (RecName: Full=Polyadenylate-binding protein 2-A; Short=PABP-2-A; Short=Poly(A)-binding protein 2-A; AltName: Full=Nuclear poly(A)-binding protein 1-A; AltName: Full=Poly(A)-binding protein II-A; Short=PABII-A; AltName: Full=Polyadenylate-binding nuclear protein 1-A; AltName: Full=XLnPABP2-A; AltName: Full=nPABP2-A; AltName: Full=xPABPII-A) HSP 1 Score: 88.5817 bits (218), Expect = 1.570e-19 Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 0 Query: 31 SPFPSS---LMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKS 133 SP P + ++ + E K + RSI++GN+DY A ++E HF G + RVTI ++ G K FA++EF KE+ +LA++E+L RGR IKV P R NRPG+ + Sbjct: 141 SPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIST 247
BLAST of AGAP005117-PA vs. SwissProt
Match: gi|46396285|sp|Q28165.3|PABP2_BOVIN (RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2; Short=Poly(A)-binding protein 2; AltName: Full=Nuclear poly(A)-binding protein 1; AltName: Full=Poly(A)-binding protein II; Short=PABII; AltName: Full=Polyadenylate-binding nuclear protein 1) HSP 1 Score: 88.1965 bits (217), Expect = 2.137e-19 Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 0 Query: 50 RSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKS 133 RSI++GN+DY A ++E HF G + RVTI ++ G K FA++EF+ KE+ +LA++E+L RGR IKV P R NRPG+ + Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST 256
BLAST of AGAP005117-PA vs. SwissProt
Match: gi|46403176|sp|Q86U42.3|PABP2_HUMAN (RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2; Short=Poly(A)-binding protein 2; AltName: Full=Nuclear poly(A)-binding protein 1; AltName: Full=Poly(A)-binding protein II; Short=PABII; AltName: Full=Polyadenylate-binding nuclear protein 1) HSP 1 Score: 88.1965 bits (217), Expect = 2.413e-19 Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 0 Query: 50 RSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKS 133 RSI++GN+DY A ++E HF G + RVTI ++ G K FA++EF+ KE+ +LA++E+L RGR IKV P R NRPG+ + Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST 256
BLAST of AGAP005117-PA vs. nr
Match: gi|30683122|ref|NP_850803.1| (RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >gi|332004145|gb|AED91528.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]) HSP 1 Score: 100.908 bits (250), Expect = 1.948e-22 Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 0 Query: 34 PSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNRQGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKSHQ 135 P+S+ AN EGK RS+++GN+DYA +V+LHF G + RVTI ++ G K FA++EF EA AL +NE+ + GR +KV+P R N PGMK + Sbjct: 73 PASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYH 174
BLAST of AGAP005117-PA vs. nr
Match: gi|1218231644|ref|XP_021697649.1| (LOW QUALITY PROTEIN: polyadenylate-binding protein 2 [Aedes aegypti]) HSP 1 Score: 101.679 bits (252), Expect = 2.327e-22 Identity = 53/103 (51.46%), Postives = 66/103 (64.08%), Query Frame = 0 Query: 31 SPFPSSLMANSEGKRASME-RSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGM 131 P P SL + + ++A ++ RSI++GN+DY A + E HF G I RVTI N+ G K FA++EF SKE ALAMNETL RGR IKV P R NRPGM Sbjct: 57 GPPPESLRSLTAEEKAEIDNRSIYVGNVDYGATAKNXEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVNPKRTNRPGM 159
BLAST of AGAP005117-PA vs. nr
Match: gi|224093736|ref|XP_002309968.1| (hypothetical protein POPTR_0007s05140g [Populus trichocarpa] >gi|1334312962|gb|PNT28009.1| hypothetical protein POPTR_007G095800v3 [Populus trichocarpa]) HSP 1 Score: 100.908 bits (250), Expect = 2.951e-22 Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 0 Query: 30 ASPFPSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNRQGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKSHQSK 137 A P P+S AN K + RS+F+GN+DYA +V+ HF G + RVTI T++ G K FA++EF EA ALA+NE+ + GR +KV+P R N PGMK + + Sbjct: 70 AVPDPASAAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALALNESELHGRQLKVSPKRTNVPGMKQYHPR 177
BLAST of AGAP005117-PA vs. nr
Match: gi|297319289|gb|EFH49711.1| (polyadenylate-binding protein family protein [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 100.138 bits (248), Expect = 3.668e-22 Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 0 Query: 34 PSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNRQGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKSHQ 135 P+++ AN EGK RS+++GN+DYA +V+LHF G + RVTI ++ G K FA++EF EA AL +NE+ + GR +KV+P R N PGMK + Sbjct: 73 PATMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYH 174
BLAST of AGAP005117-PA vs. nr
Match: gi|189239479|ref|XP_975440.2| (PREDICTED: polyadenylate-binding protein 2 isoform X2 [Tribolium castaneum]) HSP 1 Score: 100.523 bits (249), Expect = 3.823e-22 Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 0 Query: 14 KEELEVMEKILAQSDE----ASP--FPSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKSHQSKPLCQVVVQGCKAKAEDF 154 +EE E ++++ ++ D+ SP S L + E K RSI++GN+DY A ++E HF G I RVTI N+ G K FA++EF +++ A+AM+E+L RGRPIKV P R NRPG+ + P + +G + F Sbjct: 56 EEEAEKLKQLQSEVDKQMNMGSPPGLTSPLNMSLEEKMEVDNRSIYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDRDSVQTAMAMDESLFRGRPIKVMPKRTNRPGLSTTNRPPRGRGAFRGARGVGRGF 203
BLAST of AGAP005117-PA vs. nr
Match: gi|1000197521|gb|KXJ71533.1| (hypothetical protein RP20_CCG020337 [Aedes albopictus] >gi|1000203235|gb|KXJ75107.1| hypothetical protein RP20_CCG012324 [Aedes albopictus]) HSP 1 Score: 100.523 bits (249), Expect = 4.108e-22 Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = 0 Query: 18 EVMEKILAQSDEASPFPSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGM 131 ++ ++ Q SP + + +E K RSI++GN+DY A ++E HF G I RVTI N+ G K FA++EF SKE ALAMNETL RGR IKV P R NRPGM Sbjct: 61 QLQTEVTKQMTLGSPTGVTPILTAEEKAEIDNRSIYVGNVDYGATAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVNPKRTNRPGM 175
BLAST of AGAP005117-PA vs. nr
Match: gi|642929605|ref|XP_008195901.1| (PREDICTED: polyadenylate-binding protein 2 isoform X1 [Tribolium castaneum] >gi|270010566|gb|EFA07014.1| Polyadenylate-binding protein 2-like Protein [Tribolium castaneum]) HSP 1 Score: 100.523 bits (249), Expect = 4.588e-22 Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 0 Query: 14 KEELEVMEKILAQSDE----ASP--FPSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKSHQSKPLCQVVVQGCKAKAEDF 154 +EE E ++++ ++ D+ SP S L + E K RSI++GN+DY A ++E HF G I RVTI N+ G K FA++EF +++ A+AM+E+L RGRPIKV P R NRPG+ + P + +G + F Sbjct: 56 EEEAEKLKQLQSEVDKQMNMGSPPGLTSPLNMSLEEKMEVDNRSIYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDRDSVQTAMAMDESLFRGRPIKVMPKRTNRPGLSTTNRPPRGRGAFRGARGVGRGF 203
BLAST of AGAP005117-PA vs. nr
Match: gi|727561633|ref|XP_010453061.1| (PREDICTED: polyadenylate-binding protein 3 [Camelina sativa]) HSP 1 Score: 100.138 bits (248), Expect = 4.795e-22 Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 0 Query: 18 EVMEKILAQSDEASPFPSSLMA-NSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNRQGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKSHQ 135 E+ K+ + A+P P+S MA N EGK RS+++GN+DYA +V+LHF G + RVTI ++ G K FA++EF EA AL +NE+ + GR +KV+P R N PGMK + Sbjct: 58 EMQAKVETEMGAATPDPASGMATNQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEIEAVEEALQLNESELHGRQLKVSPKRTNVPGMKQYH 176
BLAST of AGAP005117-PA vs. nr
Match: gi|15238140|ref|NP_196597.1| (RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >gi|75335607|sp|Q9LX90.1|PABN3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=AtPabN2; Short=AtPabN3; Short=Poly(A)-binding protein 3; AltName: Full=Nuclear poly(A)-binding protein 3; AltName: Full=Poly(A)-binding protein III; Short=PABIII >gi|7671468|emb|CAB89408.1| RNA binding protein-like [Arabidopsis thaliana] >gi|28393013|gb|AAO41941.1| putative polyadenylate-binding protein II (PAB2) [Arabidopsis thaliana] >gi|28827384|gb|AAO50536.1| putative polyadenylate-binding protein II (PAB2) [Arabidopsis thaliana] >gi|332004146|gb|AED91529.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >gi|1032277399|gb|OAO91727.1| hypothetical protein AXX17_AT5G10010 [Arabidopsis thaliana]) HSP 1 Score: 100.138 bits (248), Expect = 5.090e-22 Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 0 Query: 34 PSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNRQGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGMKSHQ 135 P+S+ AN EGK RS+++GN+DYA +V+LHF G + RVTI ++ G K FA++EF EA AL +NE+ + GR +KV+P R N PGMK + Sbjct: 73 PASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYH 174
BLAST of AGAP005117-PA vs. nr
Match: gi|1121092265|ref|XP_019536753.1| (PREDICTED: polyadenylate-binding protein 2 [Aedes albopictus] >gi|1121180141|ref|XP_019533709.1| PREDICTED: polyadenylate-binding protein 2-like [Aedes albopictus]) HSP 1 Score: 100.138 bits (248), Expect = 5.246e-22 Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = 0 Query: 18 EVMEKILAQSDEASPFPSSLMANSEGKRASMERSIFIGNLDYAAMTSDVELHFAHLGQILRVTIPTNR-QGMSKAFAFLEFASKEAAVNALAMNETLIRGRPIKVTPMRLNRPGM 131 ++ ++ Q SP + + +E K RSI++GN+DY A ++E HF G I RVTI N+ G K FA++EF SKE ALAMNETL RGR IKV P R NRPGM Sbjct: 61 QLQTEVTKQMTLGSPTGVTPILTAEEKAEIDNRSIYVGNVDYGATAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVNPKRTNRPGM 175 The following BLAST results are available for this feature:
BLAST of AGAP005117-PA vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 11
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BLAST of AGAP005117-PA vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of AGAP005117-PA vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold322_size207131:132164..150091- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold322_size207131-processed-gene-1.11 ID=snap_masked-scaffold322_size207131-processed-gene-1.11|Name=AGAP005117-PA|organism=Tigriopus kingsejongensis|type=gene|length=17928bp|location=Sequence derived from alignment at scaffold322_size207131:132164..150091- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'AGAP005117-PA' has the following synonyms
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