cleavage stimulation factor 50 kda subunit, snap_masked-scaffold403_size186359-processed-gene-0.17 (gene) Tigriopus kingsejongensis

Overview


Name	cleavage stimulation factor 50 kda subunit
Unique Name	snap_masked-scaffold403_size186359-processed-gene-0.17
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Match: EMLSAG00000003862 (supercontig:LSalAtl2s:LSalAtl2s209:625539:633615:-1 gene:EMLSAG00000003862 transcript:EMLSAT00000003862 description:"maker-LSalAtl2s209-snap-gene-5.15")

HSP 1 Score: 61.6178 bits (148), Expect = 3.245e-10
Identity = 61/284 (21.48%), Postives = 106/284 (37.32%), Query Frame = 0

Query:  205 PSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDV--ERMLAKSNIEHLSNPNH----------EQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKL--------------------FDFSKTSAKKAMKTITDAE------------PVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLW 444
            P   P   +Y    V +   +  A   + D ++   G  DA+IK+  +   ++    + + L + N           E     V RTLY H   V  + F P + +L S S D T++L                    + F+     K +   +  +             V  IAFHP  +++  G     VR++D  +G C         H+  + ++ +SPDG+   S   D  +  WD     ++A  +N      V +  F+R+G  +  S  D    +W
Sbjct:  313 PECLPSVCFYS---VLNSASSLTAIEITDDSSILGAGFSDAAIKVWSLLPSKLKVLKSADELGDINRDADDVLHRMMEDNSGVVSRTLYGHSGPVYGISFSPDKSMLLSCSEDGTIRLWICYRGHMYAVWHVKFSPQGYYFASAGHDKTVMLWSTEQHHSLRIFAGHFSDVDCIAFHPNCNYIASGSSDRSVRVWDCVSGNCVRLMTG---HKTAVSTLAFSPDGRFLASGGRDSRVLFWDIAHGHLLADLSNH--SQTVTALAFSRDGNILAXSSTDFXLAMW 588

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BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Match: EMLSAG00000008628 (supercontig:LSalAtl2s:LSalAtl2s531:15936:18664:1 gene:EMLSAG00000008628 transcript:EMLSAT00000008628 description:"maker-LSalAtl2s531-augustus-gene-0.4")

HSP 1 Score: 60.8474 bits (146), Expect = 5.465e-10
Identity = 48/185 (25.95%), Postives = 86/185 (46.49%), Query Frame = 0

Query:  274 HPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTIT-DAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTG 457
            H ++R    H + + AL    ++ ++ SGS+D T  L+  +     + +      A  VTS+AF+    F  +     +     T++ Q     +     + E+ S+  S DG+L  + +MD + KIW+ +S +V+AT      G  +   +F+   K +L+S  D   K+WEL+   CL    G
Sbjct:  336 HKLVR---GHNEAIVALS--GRDNMILSGSKDKTAILWKLNDNLDIEMLGVCKGHATSVTSVAFNSLTCFFTISKDSVLKVWSYTDSIQSHKTILAHEGSKGEVNSLDLSVDGRLLATGAMDKTAKIWNTVSLEVVATLTGHRRG--IWCVKFSEFDKILLTSSTDGNVKIWELNGFSCLKTLQG 513

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BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Match: EMLSAG00000010784 (supercontig:LSalAtl2s:LSalAtl2s714:17193:18452:-1 gene:EMLSAG00000010784 transcript:EMLSAT00000010784 description:"snap_masked-LSalAtl2s714-processed-gene-0.5")

HSP 1 Score: 59.3066 bits (142), Expect = 9.495e-10
Identity = 58/260 (22.31%), Postives = 107/260 (41.15%), Query Frame = 0

Query:  217 AYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILD------VERMLAKSNIEHLSNPNHEQGGHPVIRT-------------------LYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTN---TGQCFVGSVPSHHH--QREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWEL 446
            A ++ H G      FS DG+   T S D ++ + D      ++R+   +   +  +P   + G P+I +                    +++  +VT + ++     + +G  D  +K++D  K +    +   TD   +T ++  P G + L       +R++D     TG+  V     H H  ++ +L   WSPDG +  + S D  + IW   S +++      H G+ V    F +    VLS+  D    L EL
Sbjct:  108 AVISGHTGAILDLNFSGDGSYLYTSSTDKTVGVFDSTTGQRIKRLKGHTGFVNTCHP--ARRGPPLIVSGSDDCTIKTWDQRKRGCVHSFNNTFQVTGVTYNDTADQIITGGIDNDLKIWDIRKNNIIYTLSGHTDT--ITGLSLSPDGSYALTNSMDNSLRIWDIRPFVTGERCVKIFSGHKHNFEKNLLRCTWSPDGAMIAAGSSDRFVHIWXTTSRRILFKLP-GHLGS-VNEIDFHKLEPIVLSASSDKNIYLGEL 361

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BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Match: EMLSAG00000009796 (supercontig:LSalAtl2s:LSalAtl2s638:23384:28063:-1 gene:EMLSAG00000009796 transcript:EMLSAT00000009796 description:"maker-LSalAtl2s638-augustus-gene-1.14")

HSP 1 Score: 58.151 bits (139), Expect = 2.674e-9
Identity = 51/229 (22.27%), Postives = 102/229 (44.54%), Query Frame = 0

Query:  184 IKNSRNEVLGPGLDLEFDT-DLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATF 411
            I+  RN ++    D      ++ +++P    +    ++ H G  R      +G    +GS D++IK+ D++     S+I                 T+  H+D+V A+  +  + ++ SGS D TVK++     S K+ ++      PV  +  H  G  LL G     ++ +   TG+C + ++  H      +S+    +    V+ S+D +IK+WD  + + ++T 
Sbjct:  194 IQLDRNRIVSGSHDKTIRVWNIKTNSP----WSVMTLSGHSGEVRC--LYLEGNRLVSGSADSTIKVWDLDIQSEWSSI-------------ACKVTMVGHLDKVRAVTMNRNKDLVISGSYDQTVKIWCLKTGSCKRTLR--GHEGPV--LCVHWAGFTLLSGSADKTIKQWSVETGEC-IRTLTGHGDAVTCISL----ETDRIVTGSLDRTIKLWDSKTGKCVSTL 394

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BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Match: EMLSAG00000001730 (supercontig:LSalAtl2s:LSalAtl2s129:321159:324031:-1 gene:EMLSAG00000001730 transcript:EMLSAT00000001730 description:"maker-LSalAtl2s129-snap-gene-3.7")

HSP 1 Score: 57.7658 bits (138), Expect = 4.441e-9
Identity = 54/229 (23.58%), Postives = 101/229 (44.10%), Query Frame = 0

Query:  239 ATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFA--NAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELST---TRCLIAYTGAGATG 462
             +GS D++++I D+E                       +  L  H+  V  + +  +  ++ SG+ D+ VK+++  +      +   T+   V S+ F   G  ++ G     +R++D  TG C   ++  H      + ++      + VS + D ++K+WD  + Q + T +  N H  A  C  QF  N K+V++S  D   KLW++ T    R L+A    G+ G
Sbjct:  419 VSGSRDSTLRIWDIE-------------------TGECLHILAGHLAAVRCVQYDGR--LVVSGAYDYMVKVWNPEREECLHTLSGHTNR--VYSLQF--DGIHVVSGSLDTSIRVWDVETGAC-KHALMGHQSLTSGMELR----NNILVSGNADSTVKVWDITNGQCLQTLSGHNKHQSAVTC-LQF--NSKFVITSSDDGTVKLWDVKTGEFVRDLVALESGGSGG 614

HSP 2 Score: 50.447 bits (119), Expect = 9.986e-7
Identity = 41/168 (24.40%), Postives = 75/168 (44.64%), Query Frame = 0

Query:  234 DGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWD 401
            DG L  +G+ D  +K+                NP  E+  H    TL  H + V +L F      + SGS D +++++D    + K A+      + +TS       + L+ G     V+++D   GQC       + HQ  +  +++  + K  +++S DG++K+WD
Sbjct:  454 DGRLVVSGAYDYMVKVW---------------NPEREECLH----TLSGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGACKHAL---MGHQSLTS-GMELRNNILVSGNADSTVKVWDITNGQCLQTLSGHNKHQSAVTCLQF--NSKFVITSSDDGTVKLWD 594

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BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Match: EMLSAG00000000430 (supercontig:LSalAtl2s:LSalAtl2s1068:253244:254083:-1 gene:EMLSAG00000000430 transcript:EMLSAT00000000430 description:"augustus_masked-LSalAtl2s1068-processed-gene-2.2")

HSP 1 Score: 55.8398 bits (133), Expect = 7.044e-9
Identity = 53/240 (22.08%), Postives = 99/240 (41.25%), Query Frame = 0

Query:  207 SAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWEL 446
            +AP P     + +TS    C A A S D  LC +   D +I + D+                H Q    ++R    H D  + +D       L +G  D TV+ +D  +    + ++       +  + + P  D+L VG     V +  TN  + +      H H+  +LS+K++  GK +VS   D  +  W    +   A+   +++ + V S   + + KY+++   D    ++E+
Sbjct:   69 AAPSPVI--KSELTSSAPACYALAISPDTKLCFSCCSDGNIGVWDL----------------HNQ---KLVRQFQGHTDGASCIDISSDGTKLWTGGLDNTVRSWDLRE---GRQLQQHDFTSQIFCLGYCPADDWLAVGMESSHVEVLHTNQPEKY----QLHLHESCVLSLKFANCGKWFVSTGKDNLLNAW---RTPYGASIFQSNESSSVLSVDISSDDKYIVTGSGDKKATVYEI 277

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BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Match: EMLSAG00000010193 (supercontig:LSalAtl2s:LSalAtl2s676:312750:314896:1 gene:EMLSAG00000010193 transcript:EMLSAT00000010193 description:"maker-LSalAtl2s676-augustus-gene-2.44")

HSP 1 Score: 55.8398 bits (133), Expect = 1.070e-8
Identity = 59/242 (24.38%), Postives = 99/242 (40.91%), Query Frame = 0

Query:  215 ETAYVTSHKGNCRAGAFSSDGTLCAT--------GSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFD---FSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREI-LSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLW 444
            E  Y++  +G+ +        TLC +        GS+D +I++ D+ R      + HL+       G PV               F P+  I A+G    +VKL+D   F K                T + F P G  +L+  +  +++L D  +GQ  + +   H + + I L   +SPD +  +S S DG + IW+  +   +      HDG   C  QF  N KY++ +   +    W
Sbjct:  100 ENKYISYFRGHTKKVV-----TLCVSPVDESFISGSLDKTIRLWDL-RSNNCQGLMHLA-------GRPVA-------------SFDPEGLIFAAGISSESVKLYDLRSFDKGPFSSFKFPPEKEMEWTGLKFSPDGKTILISTNGSLIKLIDAFSGQT-LQTFTGHLNTKGIPLEASFSPDSQFVISGSTDGRVHIWNAETGTKVCVLNGDHDGPVSC-VQF--NPKYMMMASACNNMAFW 311

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BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Match: EMLSAG00000011421 (supercontig:LSalAtl2s:LSalAtl2s78:119197:121424:1 gene:EMLSAG00000011421 transcript:EMLSAT00000011421 description:"augustus_masked-LSalAtl2s78-processed-gene-1.3")

HSP 1 Score: 56.6102 bits (135), Expect = 1.243e-8
Identity = 38/149 (25.50%), Postives = 69/149 (46.31%), Query Frame = 0

Query:  301 SGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTT 449
            SG+R F  K+   S  +     +      P+T +++ P   +L+V      V ++D +  +          H   +  + WSP+GKL  S  +D SI IW            +AH  +++   ++  + K V+S+G+DS  K+W++S T
Sbjct:  489 SGNRVFIYKVDSGSNYTTTLEKELTLSGSPITELSYSPDRKYLVVSDGNRKVTVFDDHYEK--ANKKEWGFHTARVNCIDWSPNGKLVASGGLDCSIIIWSMKDHGKHCIIQSAHLQSQITGIKWLDD-KTVVSTGQDSNVKIWDISFT 634

HSP 2 Score: 55.4546 bits (132), Expect = 2.804e-8
Identity = 50/215 (23.26%), Postives = 86/215 (40.00%), Query Frame = 0

Query:  328 AEPVTSIAFHPTGDF-LLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATF------ANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFW 535
            + PV S  F P   F ++ G       +Y+   G  F        H R + +V++SPDG L+ S   DG I ++    S++I  F       NAH G  V +  +  N K +LS+  D  C +W++ T + +  +        Q+        H     +     + ++   D  N ++ + +  GHN  +  ++  P      T   D R   W
Sbjct:  168 SRPVNSTDFKPNRPFRIITGSEDNTSAVYE---GPPFKFKGTKKDHSRYVQTVRFSPDGNLWASGGFDGRIFLYGSKDSELIGEFHSDGSSKNAHAGG-VYAISWNPNNKQILSASGDKTCCIWDVDTRKPIQEFVLGTNVEDQQLGCLWSGKH-----LLSVSLSGNINFLDVDNPSKPKHVIEGHNKPITALLVLPSEGKMFTGGSDGRIAEW 373

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BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Match: EMLSAG00000009719 (supercontig:LSalAtl2s:LSalAtl2s627:20682:23106:-1 gene:EMLSAG00000009719 transcript:EMLSAT00000009719 description:"snap_masked-LSalAtl2s627-processed-gene-0.29")

HSP 1 Score: 56.225 bits (134), Expect = 1.492e-8
Identity = 55/182 (30.22%), Postives = 84/182 (46.15%), Query Frame = 0

Query:  275 PVIR---TLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSP------DGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELS 447
            PV R   +L  H + V    F P    LASGS D TV+ +D S  +     K     + V ++A+ P G  L  G  +  + L+D  TG   VG   S H    I ++ W P      + K + SAS DG I+IWD I+ + + +   +H     C  ++  +G  + S+ +D   K+W  S
Sbjct:  116 PVSRCTSSLCGHGEPVIVASFSPNGQYLASGSGDATVRFWDLSTETPH--FKCEGHIQWVLALAWAPDGSRLASGDRRGGILLWDPKTGNKTVGRTLSGHSNF-IXALVWEPLHLSGGESKHFASASKDGDIRIWD-IAGRCLRSL-TSHTQNVTC-LKWGGSG-LIYSASQDRTIKVWRAS 290

HSP 2 Score: 54.6842 bits (130), Expect = 4.635e-8
Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 0

Query:  298 ILASGSRDFTVKLFDFSKTSAKKAMKTIT-DAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLS 434
            IL SGS DFT  LF +   + KK+   +T   + V  + F P   ++        +RL+D  TG+ F+       H + +  + W  D +L VS S D ++K+W  + ++ + T    H GA+V    ++ +G+ V+S
Sbjct:  361 ILVSGSDDFT--LFLWKPETDKKSYARLTGHQQTVNDVKFSPDARYIASASFDKSIRLWDGRTGK-FMAXF--RGHVQAVYQLAWXLDSRLIVSGSADSTVKLW-SVKNKKLHTDLPGH-GADVYCVDWSPDGQRVVS 491

HSP 3 Score: 52.373 bits (124), Expect = 2.033e-7
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 0

Query:  372 HQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGA 460
            HQ+ +  VK+SPD +   SAS D SI++WDG + + +A F   H  A V    +  + + ++S   DS  KLW +   +      G GA
Sbjct:  389 HQQTVNDVKFSPDARYIASASFDKSIRLWDGRTGKFMAXF-RGHVQA-VYQLAWXLDSRLIVSGSADSTVKLWSVKNKKLHTDLPGHGA 475

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BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Match: EMLSAG00000005405 (supercontig:LSalAtl2s:LSalAtl2s290:443342:466882:1 gene:EMLSAG00000005405 transcript:EMLSAT00000005405 description:"augustus_masked-LSalAtl2s290-processed-gene-4.1")

HSP 1 Score: 54.299 bits (129), Expect = 3.955e-8
Identity = 46/180 (25.56%), Postives = 73/180 (40.56%), Query Frame = 0

Query:  222 HKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWD 401
            H G+  + + S D     +G+ DAS K+ D+   + K        P HE               ++ A+ F P+     +GS D TVKL+D                  VTS+AF  +G  L+ G     V ++DT   +   G +  H ++   L V  +  G    + S D  +KIW+
Sbjct:  183 HTGDVMSLSLSPDSRTFVSGACDASAKLWDIRDGMCKQTF-----PGHES--------------DINAVTFFPQGTAFCTGSDDATVKLYDIXADQELAQYSHDNIICGVTSVAFSKSGRLLMAGYDDFNVNVWDTLRVE-RAGVLAGHDNRVSCLGV--TDXGMAVXTGSWDSFLKIWN 340

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BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Match: gi|67460105|sp|Q5BJQ6.1|CSTF1_RAT (RecName: Full=Cleavage stimulation factor subunit 1; AltName: Full=Cleavage stimulation factor 50 kDa subunit; Short=CSTF 50 kDa subunit; Short=CstF-50 >gi|67460583|sp|Q99LC2.1|CSTF1_MOUSE RecName: Full=Cleavage stimulation factor subunit 1; AltName: Full=CF-1 50 kDa subunit; AltName: Full=Cleavage stimulation factor 50 kDa subunit; Short=CSTF 50 kDa subunit; Short=CstF-50)

HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 254/420 (60.48%), Postives = 314/420 (74.76%), Query Frame = 0

Query:  128 IKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERD-TDIKNS--RNEVLGPG--LDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSN--IEHLSNPNHEQG--GHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            +K+R+ LY+L+ISQL YDG+  IA  L N I+P+  C PSE+L HL+ LGME D T ++ +  R++ + PG  +DLEFD D+ + +PE + YET YVTSHKG CR   +S DG L ATGS DASIKILD ERMLAKS   IE + N   +Q    HPVIRTLYDH+DEVT L FHP E ILASGSRD+T+KLFD+SK SAK+A K I +AE + SI+FHP+GDF+LVG   P +RLYD NT QCFV   P   H   I SV ++P   +YV+ S DG IK+WDG+S++ I TF  AHDGAEVCSA F++N KY+LSSGKDS+ KLWE+ST R L+ YTGAG +G+Q +R QAVFNHTED+++ PDE T SLCCWDSR A R+ LLSLGHN +VR IVHSP +P F+TCSDDFRARFWY+R
Sbjct:    8 LKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDTAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCNPQDQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRR 427

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BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Match: gi|461848|sp|Q05048.1|CSTF1_HUMAN (RecName: Full=Cleavage stimulation factor subunit 1; AltName: Full=CF-1 50 kDa subunit; AltName: Full=Cleavage stimulation factor 50 kDa subunit; Short=CSTF 50 kDa subunit; Short=CstF-50)

HSP 1 Score: 529.25 bits (1362), Expect = 0.000e+0
Identity = 254/420 (60.48%), Postives = 313/420 (74.52%), Query Frame = 0

Query:  128 IKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERD-TDIKNS--RNEVLGPG--LDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSN--IEHLSNPNHEQG--GHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            +K+R+ LY+L+ISQL YDG+  IA  L N I+P+  C PSE+L HL+ LGME D T ++ +  R++ + PG  +DLEFD D+ + +PE + YET YVTSHKG CR   +S DG L ATGS DASIKILD ERMLAKS   IE + N   +Q    HPVIRTLYDH+DEVT L FHP E ILASGSRD+T+KLFD+SK SAK+A K I +AE + SI+FHP+GDF+LVG   P +RLYD NT QCFV   P   H   I SV ++    +YV+ S DG IK+WDG+S++ I TF  AHDGAEVCSA F++N KY+LSSGKDS+ KLWE+ST R L+ YTGAG +G+Q +R QAVFNHTED+V+ PDE T SLCCWDSR A R+ LLSLGHN +VR IVHSP +P F+TCSDDFRARFWY+R
Sbjct:    8 LKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDTAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRR 427

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BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Match: gi|67460449|sp|Q5R8K2.1|CSTF1_PONAB (RecName: Full=Cleavage stimulation factor subunit 1; AltName: Full=Cleavage stimulation factor 50 kDa subunit; Short=CSTF 50 kDa subunit; Short=CstF-50)

HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 254/420 (60.48%), Postives = 313/420 (74.52%), Query Frame = 0

Query:  128 IKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERD-TDIKNS--RNEVLGPG--LDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSN--IEHLSNPNHEQG--GHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            +K+R+ LY+L+ISQL YDG+  IA  L N I+P+  C PSE+L HL+ LGME D T ++ +  R++ + PG  +DLEFD D+ + +PE + YET YVTSHKG CR   +S DG L ATGS DASIKILD ERMLAKS   IE + N   +Q    HPVIRTLYDH+DEVT L FHP E ILASGSRD+T+KLFD+SK SAK+A K I +AE + SI+FHP+GDF+LVG   P +RLYD NT QCFV   P   H   I SV ++    +YV+ S DG IK+WDG+S++ I TF  AHDGAEVCSA F++N KY+LSSGKDS+ KLWE+ST R L+ YTGAG +G+Q +R QAVFNHTED+V+ PDE T SLCCWDSR A R+ LLSLGHN +VR IVHSP +P F+TCSDDFRARFWY+R
Sbjct:    8 LKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDTAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCNPQDQHADAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYVLLPDERTISLCCWDSRIAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRR 427

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BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Match: gi|75329664|sp|Q8L4J2.1|CTF50_ARATH (RecName: Full=Cleavage stimulation factor subunit 50; Short=AtCstF-50; Short=AtCstF50; AltName: Full=CF-1 50 kDa subunit; AltName: Full=Cleavage stimulation factor 50 kDa subunit; Short=CSTF 50 kDa subunit)

HSP 1 Score: 268.855 bits (686), Expect = 2.132e-83
Identity = 161/440 (36.59%), Postives = 238/440 (54.09%), Query Frame = 0

Query:  112 LGGNRDAAPEFIPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNA-IQPEPACPPSEKLFHLVNLGMERDTD-----------IKNSRNEVLGP---GLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGS-VPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFW 535
            +G + D       GNI +    L  L+++ L +    Q+A  + +A + P     P  +L  LV  G+  + +           + +S   +  P    +D   +    SS   P + E+  ++ HK   R   FS DG   ATG  D SIK+ +V ++  K  I      + +    P+IRT YDH + +  LDFHP+  IL S ++D  +K FDFSKT+AK+A K   D   V SI+FHP+G+FLL G   PI  LYD NT QCF+ S  P       I  V++S  G +Y++AS DG+I+++DG+S++ + +  NAH  +EV SA FT++ ++VLSSGKDS  KLWE+ + R +  Y GA    + + R+QA+FN TE+FV+  DEA+  +  WD+R A +       HNG  R I HSP+   F+TC  D   RFW
Sbjct:    1 MGNSGDLEQALQDGNIFRQ---LNALIVAHLRHHNLSQVASAVASATMTPLNIEVPPNRLLELVAKGLAAENNGTLRGVSSSVLLPSSYGSITTPRTASIDFSVNHAKGSSKTIPKH-ESKTLSEHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKV--KQMI------SGDTQARPLIRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISFHPSGEFLLAGTDHPIPHLYDVNTYQCFLPSNFPDSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLWEIGSGRMVKEYLGA---KRVKLRSQAIFNDTEEFVISIDEASNEVVTWDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGIDRSIRFW 425

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BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Match: gi|20140995|sp|Q8YTC2.1|Y2800_NOSS1 (RecName: Full=Uncharacterized WD repeat-containing protein alr2800)

HSP 1 Score: 108.227 bits (269), Expect = 2.505e-23
Identity = 85/313 (27.16%), Postives = 131/313 (41.85%), Query Frame = 0

Query:  230 AFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEAT-------TSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFW 535
            AFS D  + A+GS D ++K+ D                   Q G   I +L  H D +  + F P    LAS S D +V+L++ S     + +   TD   V ++ FHP G  +  G     V+L++ +TGQC         H  +IL + WSPDG+L  SAS D S+++WD  + + +       +   V SA F+ NG+ + +   D   K+W+    +CL   TG               N   D    PD           ++  WD  N  +   + +GH  +V  +  SP      + S D   R W
Sbjct:  943 AFSPDRQILASGSNDKTVKLWD------------------WQTG-KYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDW--VYAVVFHPQGKIIATGSADCTVKLWNISTGQCLK---TLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSN--RVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHT-------------NWVFDIAFSPDGKILASASHDQTVRIWDV-NTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIW 1215

HSP 2 Score: 106.301 bits (264), Expect = 1.030e-22
Identity = 91/318 (28.62%), Postives = 142/318 (44.65%), Query Frame = 0

Query:  219 VTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSL-GHNGVVRHIVHSPISPAFLTCSDDFRARFW 535
            +T H+    + AF  DG   A+ S D +IK+ D+                  Q G   ++TL  H D V  + F P    LAS + D T+KL+D S+    + +K+ T    V S+AF   G  L  G     +++++ +TG+C    +    H   + S+ +SPD K+ VS S D +IK+WD  +   I T  + H   EVCS  F+ +G+ +     D   +LW   T +CL A+ G        + A  V    +  ++       ++  WD +  T K + SL GH   +  I  SP S    + S D   R W
Sbjct:  722 LTGHEHEVFSVAFHPDGETLASASGDKTIKLWDI------------------QDG-TCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGW--VRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTL-HGHTN-EVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYG------NTDWALPVAFSPDRQILASGSNDKTVKLWDWQ--TGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLW 1005

HSP 3 Score: 89.3521 bits (220), Expect = 2.874e-17
Identity = 87/328 (26.52%), Postives = 131/328 (39.94%), Query Frame = 0

Query:  219 VTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFV----MFPDEAT-------TSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFW 535
            +T H    R  AFS DG   A+ + D +IK+ DV                  QG    +RTL  H   V ++ F      LASGS D T+K++++      K    I     V SIA+ P    L+ G     ++L+D  T  C       H H  E+ SV +SPDG+     S+D S+++W+  + Q +  +    D A      F+ + + + S   D   KLW+  T + + +  G                HT DF+      PD  T       +S+  W+       Q+L L H   V  +V  P      T S D   + W
Sbjct:  764 LTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVS-----------------QG--KCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTY--IGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIK---TLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWA--LPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEG----------------HT-DFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQIL-LEHTDWVYAVVFHPQGKIIATGSADCTVKLW 1047

HSP 4 Score: 83.5741 bits (205), Expect = 1.706e-15
Identity = 66/264 (25.00%), Postives = 116/264 (43.94%), Query Frame = 0

Query:  230 AFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITD-AEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATF--------------------ANAHDGA------------EVC--------SAQFTRNGKYVLSSGKDSLCKLWELSTTRCL 452
            AFS D    A+ S D+S+++ ++                         + L +H D V A+ FHP+  I+A+GS D TVKL++ S     + +KT+++ ++ +  +A+ P G  L        VRL+D  TG+C VG +  H ++  + S  +SP+G++  + S D ++KIWD    + + T                     + +HD               +C        S  F+ +G+ V S  +D   ++W + T  CL
Sbjct:  985 AFSPDSQTLASASTDSSVRLWNIST-------------------GQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNIS---TGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRC-VGILRGHSNR--VYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWNVKTGECL 1223

HSP 5 Score: 61.6178 bits (148), Expect = 1.119e-8
Identity = 42/142 (29.58%), Postives = 65/142 (45.77%), Query Frame = 0

Query:  222 HKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCF 363
            H     +  FS +G + AT S D ++KI D                  +QG    ++TL  H + V  + F P   ILAS S D TV+++D +  + K     I     V+S+AF P G+ +  G     VR+++  TG+C 
Sbjct: 1103 HSNRVYSAIFSPNGEIIATCSTDQTVKIWD-----------------WQQG--KCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVN--TGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWNVKTGECL 1223

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Match: gi|74996742|sp|Q54KL5.1|WDR5_DICDI (RecName: Full=WD repeat-containing protein 5 homolog)

HSP 1 Score: 102.064 bits (253), Expect = 1.435e-22
Identity = 73/255 (28.63%), Postives = 119/255 (46.67%), Query Frame = 0

Query:  207 SAPE-PAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGH--PVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTT-RCLIAYTG 457
            S P+ P Y     +  H  +  +  FS DG   A+ S D +IKI                      G +     RTL  H + ++ + +     ++ S S D T+K++D       K +K     E V  ++F+P  + ++ G     VR++D NTG+C   +     H   +  V ++ DG L VS S DG+++IWD  + Q++ T +   DG EV   +F+ NGK+VL+   D+  +LW  +   +CL  YTG
Sbjct:   29 SIPQTPNYILKYTLKGHLKSISSVKFSPDGKWLASASADKTIKIW---------------------GAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLK--GHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGEC---TKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTIS-TEDGKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTYTG 256

HSP 2 Score: 89.7373 bits (221), Expect = 2.338e-18
Identity = 61/238 (25.63%), Postives = 112/238 (47.06%), Query Frame = 0

Query:  222 HKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVC--SAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTG 457
            HK      A+S D  L  + S D +IKI DVE                      +++TL  H + V  + F+P+  ++ SGS D  V+++D +     K +   +D  PVT + F+  G  ++ G +   VR++DT TGQ    +  S    +E+  VK+SP+GK  ++ ++D ++++W   +++        H   + C  S      GK++++  +D+L  ++ L T   +    G
Sbjct:   87 HKEGISDIAWSQDSKLICSASDDKTIKIWDVE-------------------SGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMISAHSD--PVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLL--NTISTEDGKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTYTGHKNEKYCIFSTFSVTCGKWIVTGSEDNLIYIYNLQTREIVQTLAG 301

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Match: gi|75335857|sp|Q9M2Z2.1|WDR5A_ARATH (RecName: Full=COMPASS-like H3K4 histone methylase component WDR5A; Short=AtWDR5A)

HSP 1 Score: 99.3673 bits (246), Expect = 9.594e-22
Identity = 82/336 (24.40%), Postives = 147/336 (43.75%), Query Frame = 0

Query:  203 DLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            ++P++A    Y  +  +TSH     +  FSSDG L A+ S D +I+   +  +      + ++ P  E  GH          + ++ + F      + S S D T+KL+D    S  K +  I        + F+P  + ++ G     VR++D  TG+C +  +P+H     + +V ++ DG L VS+S DG  +IWD  +   + T  +  +   V   +F+ NGK++L    D+  +LW +S+ + L  YTG       +    + F+ T    +        +  W+  +    Q L  GH   V ++   P      + S D   R W ++
Sbjct:    4 EIPATASFTPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTIN-----DPIAEPVQEFTGHE---------NGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTL--IGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKC-LKVLPAH--SDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLID-DENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGH---VNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLE-GHTETVMNVACHPTENLIASGSLDKTVRIWTQK 315

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BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Match: gi|3123159|sp|Q17963.1|WDR51_CAEEL (RecName: Full=WD repeat-containing protein wdr-5.1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.661e-21
Identity = 70/251 (27.89%), Postives = 113/251 (45.02%), Query Frame = 0

Query:  222 HKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVF 472
            H  +  +  FS  G    T S D ++KI +++ M+ +                   RTL  H   V  + +      + S S D T+K+F+   +   K +K   +   V    F+P    ++ G     VR++D  TG C + ++P+H     + +V ++ DG L  S S DG ++IWD  + Q I T  +  +   V   +F+ NGKY+L+S  DS  KLW+ S  + L  YTG       EN    +F
Sbjct:   86 HTKSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICE-------------------RTLTGHKLGVNDIAWSSDSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNY--VFCCNFNPQSSLVVSGSFDESVRIWDVKTGMC-IKTLPAH--SDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVD-DENPPVAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQYTG------HENSKYCIF 305

HSP 2 Score: 90.1225 bits (222), Expect = 2.594e-18
Identity = 64/245 (26.12%), Postives = 119/245 (48.57%), Query Frame = 0

Query:  219 VTSHKGNCRAGAFSSDGTLCATGSVDASIKILDV--ERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCS-AQFT-RNGKYVLSSGKDSLCKLWELST---TRCLIAYT 456
            +T HK      A+SSD     + S D ++KI ++   RM                      +TL  H + V   +F+P+  ++ SGS D +V+++D       K +   +D  PV++++F+  G  +  G +  +VR++DT  GQC    V        +  VK+SP+GK  +++++D ++K+WD    + +  +   H+ ++ C  A F+   GK+++S  +D    +W L T    +CL  +T
Sbjct:  125 LTGHKLGVNDIAWSSDSRCVVSASDDKTLKIFEIVTSRM---------------------TKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSD--PVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLV--DDENPPVAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQYT-GHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNLQTREIVQCLEGHT 343

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Match: gi|20532311|sp|Q8YRI1.1|YY46_NOSS1 (RecName: Full=Uncharacterized WD repeat-containing protein alr3466)

HSP 1 Score: 100.908 bits (250), Expect = 6.555e-21
Identity = 101/374 (27.01%), Postives = 153/374 (40.91%), Query Frame = 0

Query:  222 HKGNCRAGAFSSDGTLCATGSVDASIKILDVE---------------RMLAKS-NIEHLSNPNHEQ-------GGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTG-----------------AGATGKQENRAQAV---------FNHTE---DFVMFPDEAT-------TSLCCWDSRNATRKQLLSL-GHNGVVRHIVHSPISPAFLTCSDDFRARFW 535
            H    R+  FS DG + A+G  D  +++ D+                R L  S N   L+N + +Q            + TL  H + V A+ F P    LASGS D TV+L+D S +     ++  T    V S+ F+P G  L  G     VRL++ N+ +C         H   + SV ++PDG +  S S D ++++WD  SS+ + TF    +   V S  F  +G  + S   D   +LWE+S+++CL  + G                 A  +  Q  R  ++           HT      +  PD A         ++  W   +   K L +L GHN  V  IV SP      + SDD   R W
Sbjct: 1073 HTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSW--VNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLC---TFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNW--VNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSG--KCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLW 1437

HSP 2 Score: 95.9005 bits (237), Expect = 2.036e-19
Identity = 88/322 (27.33%), Postives = 135/322 (41.93%), Query Frame = 0

Query:  222 HKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTS-------LCCWDSRNATRKQLLSL-GHNGVVRHIVHSPISPAFLTCSDDFRARFW 535
            H     +  FS DG + A+GS D ++++ D+                        ++T   H   V ++ F P   +LASGS D TV+L+D S        +  T    V S+AF+  G  L  G     VRL+D ++ QCF        H   + SV +S DG +  S S D ++++WD  S   + T    H    V S  F+ +G  + S G D + +LW++S+  CL  YT  G T           +     V  P+  T +       +  WD   +++K L +L GH   V  +  SP      + S D   R W
Sbjct:  905 HNSWVNSVGFSQDGKMLASGSDDQTVRLWDI-------------------SSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGW--VYSVAFNLDGSMLATGSGDQTVRLWDISSSQCF---YIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTL-QGHTSC-VRSVVFSPDGAMLASGGDDQIVRLWDISSGNCL--YTLQGYT-----------SWVRFLVFSPNGVTLANGSSDQIVRLWDI--SSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLW 1185

HSP 3 Score: 83.9593 bits (206), Expect = 1.417e-15
Identity = 88/319 (27.59%), Postives = 126/319 (39.50%), Query Frame = 0

Query:  224 GNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTS-------LCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFW 535
            G+    AFS DG L ATG     ++  +     A +  E L+   H                 V ++ F     +LASGS D TV+L+D S     K  K  T    V S+ F P    L  G     VRL+D ++G+C         H   + SV ++ DG +  + S D ++++WD  SSQ    F   H    V S  F+ +G  + S   D   +LW++S+  CL  YT  G T           +     V  PD A  +       +  WD  +      L  G+   VR +V SP        S D   R W
Sbjct:  865 GSVLTVAFSPDGKLFATGDSGGIVRFWE-----AATGKELLTCKGHNSW--------------VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHT--SRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECL---YIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIF-QGHTSC-VRSVVFSSDGAMLASGSDDQTVRLWDISSGNCL--YTLQGHT-----------SCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQ-GYTSWVRFLVFSPNGVTLANGSSDQIVRLW 1143

HSP 4 Score: 82.8037 bits (203), Expect = 2.842e-15
Identity = 62/231 (26.84%), Postives = 105/231 (45.45%), Query Frame = 0

Query:  222 HKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCL 452
            H     + AF+ DG++ A+GS D ++++ ++                        + T   H   V+++ F P   +LASGS D TV+L+  S  S +     +     V S+ F P G  L  G     VRL+  ++G+C         H   + S+ +SPDG L  S S D ++++W+  S + + T  + H  + V S  F+ +G  + S   D   KLW++ T  C+
Sbjct: 1283 HTNWVNSVAFNPDGSMLASGSGDQTVRLWEI-------------------SSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSIS--SGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLY---TLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTL-HGHINS-VRSVAFSSDGLILASGSDDETIKLWDVKTGECI 1487

HSP 5 Score: 76.2554 bits (186), Expect = 3.784e-13
Identity = 59/206 (28.64%), Postives = 93/206 (45.15%), Query Frame = 0

Query:  222 HKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTIT-DAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFAN--AHDGAEVCSAQ 424
            H     +  FS DGT+ A+GS D ++++  +                        + T   H + V ++ F P   ILASGS D TV+L+  S   + K + T+      V SI F P G  L  G     VRL++ ++G+C       H H   + SV +S DG +  S S D +IK+WD  + + I T  +   ++G  + S +
Sbjct: 1325 HTSWVSSVTFSPDGTMLASGSDDQTVRLWSI-------------------SSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSIS---SGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLY---TLHGHINSVRSVAFSSDGLILASGSDDETIKLWDVKTGECIKTLKSEKIYEGMNITSVR 1505

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Match: gi|322518324|sp|B6GZD3.1|LIS12_PENCW (RecName: Full=Nuclear distribution protein nudF 2; AltName: Full=Lissencephaly-1 homolog 2; Short=LIS-1 2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.026e-20
Identity = 80/282 (28.37%), Postives = 128/282 (45.39%), Query Frame = 0

Query:  274 HPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGD-FLLVGCHQPI-VRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAV-------FNHTEDFV-----MFPDEATT------SLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFW 535
            HP IR+L  H D +  + FHPK  ++ASGS D T++++D+  ++ ++ +K  T A  V  + +  T    LL  C     ++L+DT      V ++  H H   + +V++ P G L  SAS D  + +W+ I+   + T  +        S  F  +G+++LS+G D   +LWE+S ++ +  +T  G     ENR           F +   F+         E T       S+  WDS    R  +   GH   VR I   P     L+ SDD   R W
Sbjct:  105 HP-IRSLESHRDSINCIAFHPKYSLIASGSGDLTIRIWDWEDSTLERTLKGHTMA--VCDVDYGDTSSGILLASCSSDFTIKLWDTTDDYKNVKTLRGHDHI--VSAVRFIPSGNLLASASRDMKVILWNVINGYRVKTIEDHTGWVRDISPSF--DGQFLLSTGDDMTVRLWEISASQPICKFTATG----HENRILCCAVAPATSFRYLASFLESRGSTIAAEITATGSRDKSIKLWDSHG--RCIMTLTGHASWVRAIAFHPGGKYLLSVSDDKTMRCW 373

HSP 2 Score: 63.929 bits (154), Expect = 1.445e-9
Identity = 80/315 (25.40%), Postives = 133/315 (42.22%), Query Frame = 0

Query:  219 VTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEP--ILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTS-IAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATF-ANAHDGAEVCSA-----QFTRNGKYVLSSG------------KDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWD-SRNATRKQLLSLGHNGVV 511
            + SH+ +    AF    +L A+GS D +I+I D E     S +E               RTL  H   V  +D+       +LAS S DFT+KL+D   T   K +KT+   + + S + F P+G+ L        V L++   G   V ++  H     +  +  S DG+  +S   D ++++W+  +SQ I  F A  H+   +C A      F     ++ S G            +D   KLW+ S  RC++  TG        +  +A+  H     +       ++ CWD S+     + +S  H+G +
Sbjct:  110 LESHRDSINCIAFHPKYSLIASGSGDLTIRIWDWE----DSTLE---------------RTLKGHTMAVCDVDYGDTSSGILLASCSSDFTIKLWD--TTDDYKNVKTLRGHDHIVSAVRFIPSGNLLASASRDMKVILWNVINGY-RVKTIEDHTGW--VRDISPSFDGQFLLSTGDDMTVRLWEISASQPICKFTATGHENRILCCAVAPATSFRYLASFLESRGSTIAAEITATGSRDKSIKLWD-SHGRCIMTLTG------HASWVRAIAFHPGGKYLLSVSDDKTMRCWDLSQQGRCVKSISNAHDGFI 393

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BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Match: gi|795053941|ref|XP_011871011.1| (PREDICTED: cleavage stimulation factor subunit 1 isoform X2 [Vollenhovia emeryi])

HSP 1 Score: 637.106 bits (1642), Expect = 0.000e+0
Identity = 303/431 (70.30%), Postives = 351/431 (81.44%), Query Frame = 0

Query:  120 PEFIPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERDTD------------IKNSRNEVLGPGLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            PE  P N+IK+RE LYRLMISQLFYDGHQ +AVQL N IQ EP CPPS++L HL+ +G   + D              +S +  LGPGLDLEF+T+  + APEPA YETAYVTSHKGNCRAGAFSSDG L ATGSVDASIKILDV+RMLAKS  E ++ P  + GGHPVIRTLYDH++EVT L+FHP+EPIL SGSRDF+VKLFDFSK S KKA +TITDA+ +  ++FHPTGDFL+VG + P+VRLYD NT QCFV S+PSH H   I S+K+SPD K Y SA  DGSIK+WDG+SS+ + TFA AHDG EVCS  FTRNGKY+LSSGKDSL KLWELST+RCLIAYTGAG TGKQE++AQA+FNHTED+VMFPDEATTSLC W+SRNA+RKQLLSLGHNG VR IVHSP +PAFLTCSDDFRARFW++R
Sbjct:    4 PEADPKNMIKSRELLYRLMISQLFYDGHQTLAVQLSNMIQAEPPCPPSDRLLHLMLIGAAHEPDRAKKDSSANLSTFASSFDNTLGPGLDLEFETETQTQAPEPAQYETAYVTSHKGNCRAGAFSSDGQLIATGSVDASIKILDVDRMLAKSAPEEIT-PGDQTGGHPVIRTLYDHLEEVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLIVGTNHPVVRLYDVNTAQCFVCSIPSHQHTAGITSIKYSPDAKTYASAGKDGSIKLWDGVSSRCVNTFAKAHDGYEVCSVIFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQEHKAQAIFNHTEDYVMFPDEATTSLCAWNSRNASRKQLLSLGHNGPVRMIVHSPTAPAFLTCSDDFRARFWFRR 433

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Match: gi|815799842|ref|XP_012220564.1| (PREDICTED: cleavage stimulation factor subunit 1 [Linepithema humile])

HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0
Identity = 304/431 (70.53%), Postives = 352/431 (81.67%), Query Frame = 0

Query:  120 PEFIPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGM--ERDTDIKNSRNEV----------LGPGLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            PE  P NIIK+RE LYRLMISQLFYDGHQ +AVQL N IQ EP CPPS++L HL+ +G   E D   K++ N +          LGPGLDLEF+T+  + APEPA YETAYVTSHKGNCRAGAFS+DG L ATGSVDASIKILDV+RMLAKS  + ++ P  + GGHPVIRTLYDH++EVT L+FHP+EPIL SGSRDF+VKLFDFSK S KKA +TITDA+ +  ++FHPTGDFL+VG + P+VRLYD NT QCFV S+PSH H   I S+K+SPD K Y SA  DGSIK+WDG+SS+ I TF  AHDG EVCS  FTRNGKY+LSSGKDSL KLWELST+RCLIAYTGAG TGKQE++AQA+FNHTED+VMFPDEATTSLC W+SRNA+RKQLLSLGHNG VR IVHSP +PAFLTCSDDFRARFW++R
Sbjct:    4 PEVDPKNIIKSREQLYRLMISQLFYDGHQTLAVQLSNIIQAEPPCPPSDRLLHLMLIGAAHEPDRSKKDTSNSLSTFASSFDNTLGPGLDLEFETETQTQAPEPAQYETAYVTSHKGNCRAGAFSADGQLIATGSVDASIKILDVDRMLAKSAPDEMA-PGDQTGGHPVIRTLYDHLEEVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLIVGTNHPVVRLYDVNTAQCFVCSIPSHQHTAGITSIKYSPDAKTYASAGKDGSIKLWDGVSSRCINTFVKAHDGYEVCSVTFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQEHKAQAIFNHTEDYVMFPDEATTSLCAWNSRNASRKQLLSLGHNGPVRLIVHSPTAPAFLTCSDDFRARFWFRR 433

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BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Match: gi|751218509|ref|XP_011162294.1| (PREDICTED: cleavage stimulation factor subunit 1 [Solenopsis invicta])

HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0
Identity = 303/431 (70.30%), Postives = 351/431 (81.44%), Query Frame = 0

Query:  120 PEFIPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERDTD------------IKNSRNEVLGPGLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            PE  P NIIK+RE LYRLMISQLFYDGHQ +AVQL N IQ EP CPPS++L HL+ +G   + D              +S +  LGPGLDLEF+T+  + APEPA YETAYVTSHKGNCRAGAFSSDG L ATGSVDASIKILDV+RMLAKS  E ++ P  + GGHPVIRTLYDH++EVT L+FHP+EPIL SGSRDF+VKLFDFSK S KKA +TITDA+ +  ++FHPTGDFL+VG + P+VRLYD NT QCFV S+PSH H   I S+K+SPD K Y SA  DGSIK+WDG+S++ + TFA AHDG EVCS  FTRNGKY+LSSGKDSL KLWELST+RCLIAYTGAG TGKQE++AQA+FNHTED+VMFPDEATTSLC W+SRNA+RKQLLSLGHNG VR IVHSP +PAFLTCSDDFRARFW++R
Sbjct:    4 PEADPKNIIKSRELLYRLMISQLFYDGHQTLAVQLSNVIQAEPPCPPSDRLLHLMLIGAAHEPDRSKKDNSTSISTFASSFDNTLGPGLDLEFETETQTQAPEPAQYETAYVTSHKGNCRAGAFSSDGQLIATGSVDASIKILDVDRMLAKSAPEEIA-PGDQTGGHPVIRTLYDHLEEVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLIVGTNHPVVRLYDVNTAQCFVCSIPSHQHTAGITSIKYSPDAKTYASAGKDGSIKLWDGVSNRCVNTFAKAHDGYEVCSVIFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQEHKAQAIFNHTEDYVMFPDEATTSLCAWNSRNASRKQLLSLGHNGPVRMIVHSPTAPAFLTCSDDFRARFWFRR 433

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BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Match: gi|951565066|ref|XP_014481393.1| (PREDICTED: cleavage stimulation factor subunit 1 [Dinoponera quadriceps])

HSP 1 Score: 636.336 bits (1640), Expect = 0.000e+0
Identity = 305/437 (69.79%), Postives = 352/437 (80.55%), Query Frame = 0

Query:  113 GGNRDAAPEFIPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGM--ERDTDIKNSRN---------EVLGPGLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            G N    PE  P NIIK+RE LYRLMISQLFYDGHQ +AVQL N +Q EP CPPS++L HL+ +G   E D   K S N           LGPGLDLEF+T+  + APEPA YETAYVTSHKGNCRAGAFS+DG L ATGSVDASIKILDV+RMLAKS  + ++ P  + GGHPVIRTLYDH++EVT L+FHP+EPIL SGSRDF+VKLFDFSK S KKA +TITDA+ +  ++FHPTGDFL+VG + P+VRLYD NT QCFV S+PSH H   I S+K+SPD K Y SA  DGSIK+WDG+S++ I TF  AHDG EVCS  FTRNGKY+LSSGKDSL KLWELST+RCLIAYTGAG TGKQE++AQA+FNHTED+VMFPDEATTSLC W+SRNA+RKQLLSLGHNG VR IVHSP +PAFLTCSDDFRARFW++R
Sbjct:    3 GQNATKEPEVDPKNIIKSRELLYRLMISQLFYDGHQTLAVQLSNMMQAEPPCPPSDRLLHLMLIGAAHEPDRSKKESNNVSTFASSFDNTLGPGLDLEFETEAQTQAPEPAQYETAYVTSHKGNCRAGAFSADGQLIATGSVDASIKILDVDRMLAKSAPDEMA-PGDQTGGHPVIRTLYDHLEEVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLIVGTNHPVVRLYDVNTAQCFVCSIPSHQHTAGITSIKYSPDAKTYASAGKDGSIKLWDGVSNRCINTFVKAHDGYEVCSVTFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQEHKAQAIFNHTEDYVMFPDEATTSLCAWNSRNASRKQLLSLGHNGPVRLIVHSPTAPAFLTCSDDFRARFWFRR 438

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Match: gi|826453264|ref|XP_012532678.1| (PREDICTED: cleavage stimulation factor subunit 1 isoform X1 [Monomorium pharaonis])

HSP 1 Score: 636.336 bits (1640), Expect = 0.000e+0
Identity = 303/431 (70.30%), Postives = 351/431 (81.44%), Query Frame = 0

Query:  120 PEFIPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERDTD------------IKNSRNEVLGPGLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            PE  P N+IK+RE LYRLMISQLFYDGHQ +AVQL N IQ EP CPPS++L HL+ +G   + D              +S +  LGPGLDLEF+T+  + APEPA YETAYVTSHKGNCRAGAFSSDG L ATGSVDASIKILDV+RMLAKS  E ++ P  + GGHPVIRTLYDH++EVT L+FHP+EPIL SGSRDF+VKLFDFSK S KKA +TITDA+ +  ++FHPTGDFL+VG + PIVRLYD NT QCFV S+PSH H   I S+K+SPD K Y SA  DGSIK+WDG+S++ + TFA AHDG EVCS  FTRNGKY+LSSGKDSL KLWELST+RCLIAYTGAG TGKQE++AQA+FNHTED+VMFPDEATTSLC W+SRNA+RKQLLSLGHNG VR IVHSP +PAFLTCSDDFRARFW++R
Sbjct:    4 PEADPKNVIKSRELLYRLMISQLFYDGHQTLAVQLSNMIQAEPPCPPSDRLLHLMLIGTAHEPDRSKKDNSTSLSTFASSFDNTLGPGLDLEFETETQTQAPEPAQYETAYVTSHKGNCRAGAFSSDGQLIATGSVDASIKILDVDRMLAKSAPEEIA-PGDQTGGHPVIRTLYDHLEEVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLIVGTNHPIVRLYDVNTAQCFVCSIPSHQHTAGITSIKYSPDAKTYASAGKDGSIKLWDGVSNRCVNTFAKAHDGYEVCSVIFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQEHKAQAIFNHTEDYVMFPDEATTSLCAWNSRNASRKQLLSLGHNGPVRMIVHSPTAPAFLTCSDDFRARFWFRR 433

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Match: gi|769832588|ref|XP_011643192.1| (PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1 [Pogonomyrmex barbatus])

HSP 1 Score: 636.336 bits (1640), Expect = 0.000e+0
Identity = 306/449 (68.15%), Postives = 357/449 (79.51%), Query Frame = 0

Query:  102 PAGTQANATTLGGNRDAAPEFIPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERDTD------------IKNSRNEVLGPGLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            P+   AN +T+       PE  P NIIK+RE LYRLMISQLFYDGHQ +AVQL N IQ EP CPPS++L HL+ +G   + D              +S +  LGPGLDLEF+T+  + APEPA YETAYVTSHKGNCRAGAFS+DG L ATGSVDASIKILDV+RMLAKS  E ++ P  + GGHPVIRTLYDH++EVT L+FHP+EPIL SGSRDF+VKLFDFSK S KKA +TITDA+ +  ++FHPTGDFL+VG + P+VRLYD NT QCFV S+PSH H   I S+K+SPD K Y SA  DGSIK+WDG+S++ I TFA AHDG EVCS  FTRNGKY+LSSGKDSL KLWELST+RCLIAYTGAG TGKQE++AQA+FNHTED+VMFPDEATTSLC W+S NA+RKQLLSLGHNG VR IVHSP +PAFLTCSDDFRARFW++R
Sbjct:   48 PSKNTANQSTM-----KEPEADPKNIIKSRELLYRLMISQLFYDGHQTLAVQLSNMIQAEPPCPPSDRLLHLMLIGTAHEPDRSKKDNSSNLSTFASSFDNTLGPGLDLEFETETQTQAPEPAQYETAYVTSHKGNCRAGAFSADGQLIATGSVDASIKILDVDRMLAKSAPEEIA-PGDQTGGHPVIRTLYDHLEEVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLIVGTNHPVVRLYDVNTAQCFVCSIPSHQHTAGITSIKYSPDAKTYASAGKDGSIKLWDGVSNRCINTFAKAHDGYEVCSVIFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQEHKAQAIFNHTEDYVMFPDEATTSLCAWNSXNASRKQLLSLGHNGPVRMIVHSPTAPAFLTCSDDFRARFWFRR 490

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Match: gi|1153833364|ref|XP_020293282.1| (cleavage stimulation factor subunit 1 isoform X1 [Pseudomyrmex gracilis])

HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0
Identity = 300/438 (68.49%), Postives = 351/438 (80.14%), Query Frame = 0

Query:  112 LGGNRDAAPEFIPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERDTDIKNSRN-----------EVLGPGLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            +  N    PE  P NIIK+RE+LYRLMISQLFYDGHQ +A+QL N IQ EP CPPS++L HL+ +G   + D     N             LGPGLDLEF+T++ + APEPA YETAYVTSHKGNCRAGAFS+DG L ATGSVDASIKILDV+RMLAKS  + +  P  + GGHPVIRTLYDH++EVT L+FHP+EPIL SGSRDF+VKLFDFSK S KKA +TITDA+ +  ++FHPTGD+L+VG + P+VRLYD NT QCFV S+PSH H   I S+K+SPD K Y SA  DGSIK+WDG+S++ I TF  AHDG EVCS  FTRNGKY+LSSGKDSL KLWELST+RCLIAYTGAG TGKQE++AQA+FNHTED+VMFPDEATTSLC W+SRNA+RKQLLSLGHNG VR IVHSP +PAFLTCSDDFRARFW++R
Sbjct:    1 MSNNATKEPEVDPKNIIKSRETLYRLMISQLFYDGHQTLAMQLSNVIQAEPPCPPSDRLLHLMLIGAAHEPDRSKKENTSLSTFASSFDNTLGPGLDLEFETEIQTQAPEPAQYETAYVTSHKGNCRAGAFSADGQLIATGSVDASIKILDVDRMLAKSAPDEVP-PGDQTGGHPVIRTLYDHLEEVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDYLIVGTNHPVVRLYDVNTAQCFVCSIPSHQHSNGITSIKYSPDAKTYASAGKDGSIKLWDGVSNRCINTFVKAHDGYEVCSVTFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQEHKAQAIFNHTEDYVMFPDEATTSLCAWNSRNASRKQLLSLGHNGPVRLIVHSPTAPAFLTCSDDFRARFWFRR 437

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Match: gi|225719552|gb|ACO15622.1| (Cleavage stimulation factor 50 kDa subunit [Caligus clemensi])

HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0
Identity = 303/430 (70.47%), Postives = 351/430 (81.63%), Query Frame = 0

Query:  120 PEF-IPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERDTDIK----------NSRNEVLGPGLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            PEF + GN++KNRE+LYRLMISQLFYDGHQQ+A+QL   +  EPACPPSE+L  +V LGME++ +            N+ N +    LDLEFDT++ S APEPA YETAYVTSHK  CRAGAFSSDG LCATGS DASIK+LDV+RMLAKSN E   +   E  GHPVIRTLYDH+DEVT L+FHPKE ILASGS+D T+KLFD+SK SAKKA +TITDAE + S++F+PTGDFLL GC  P+VRLYD NT QCFV S+    H  E+  VKWS DGKLYVS S+DG+ KIWDG+SS+V+ TF  AHDGAEVCSA FTRNGKY+L+SGKDSL KLWELST+RCLIAYTGAG TG+QE+RAQAVFNHT+D+VMFPDEATTSLCCWDSRNA+RK LLSLGHNG VR+IVHS +SPAFLT SDDFRARFW+KR
Sbjct:   13 PEFTLGGNVLKNREALYRLMISQLFYDGHQQVALQLSGIVGTEPACPPSERLHKVVTLGMEKERNALAASKAAASAPNNTNGMSLYSLDLEFDTEMRSEAPEPALYETAYVTSHKSFCRAGAFSSDGQLCATGSADASIKVLDVDRMLAKSNNEIPVSKQSE--GHPVIRTLYDHVDEVTCLEFHPKETILASGSKDNTIKLFDYSKASAKKACRTITDAEKIQSLSFNPTGDFLLAGCEHPVVRLYDVNTSQCFVSSISQQRHNAEVTVVKWSNDGKLYVSTSLDGTFKIWDGVSSKVVNTFEQAHDGAEVCSAYFTRNGKYILTSGKDSLIKLWELSTSRCLIAYTGAGTTGRQEHRAQAVFNHTDDYVMFPDEATTSLCCWDSRNASRKTLLSLGHNGAVRNIVHSTVSPAFLTSSDDFRARFWFKR 440

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Match: gi|780628358|ref|XP_011684871.1| (PREDICTED: cleavage stimulation factor subunit 1 [Wasmannia auropunctata])

HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 302/431 (70.07%), Postives = 351/431 (81.44%), Query Frame = 0

Query:  120 PEFIPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERDTD------------IKNSRNEVLGPGLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            PE  P NIIK+RE LYRLMISQLFYDGHQ +AVQL N +Q EP CPPS++L HL+ +G   + D              +S +  LGPGLDLEF+T+  + APEPA YETAYVTSHKGNCRAGAFSSDG L ATGSVDASIKILDV+RMLAKS  E ++ P  + GGHPVIRTLYDH++EVT L+FHP+EPIL SGSRDF+VKLFDFSK S KKA +TITDA+ +  ++FHPTGDFL+VG + P+VRLYD NT QCFV S+PSH H   I S+K+SPD K Y SA  DGSIK+WDG+S++ + TFA AHDG EVCS  FTRNGKY+LSSGKDSL KLWELST+RCLIAYTGAG TGKQE++AQA+FNHTED+VMFPDEATTSLC W+SRNA+RKQLLSLGHNG VR IVHSP +PAFLTCSDDFRARFW++R
Sbjct:    4 PEADPKNIIKSRELLYRLMISQLFYDGHQTLAVQLSNMMQAEPPCPPSDRLLHLMLIGTAHEPDRSKKDNSTSLSTFASSFDNTLGPGLDLEFETETQTQAPEPAQYETAYVTSHKGNCRAGAFSSDGQLIATGSVDASIKILDVDRMLAKSAPEEIA-PGDQTGGHPVIRTLYDHLEEVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLIVGTNHPVVRLYDVNTAQCFVCSIPSHQHTAGITSIKYSPDAKTYASAGKDGSIKLWDGVSNRCVNTFAKAHDGYEVCSVIFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQEHKAQAIFNHTEDYVMFPDEATTSLCAWNSRNASRKQLLSLGHNGPVRMIVHSPTAPAFLTCSDDFRARFWFRR 433

[Close]

BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Match: gi|970898967|ref|XP_015115117.1| (PREDICTED: cleavage stimulation factor subunit 1 [Diachasma alloeum])

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 302/434 (69.59%), Postives = 351/434 (80.88%), Query Frame = 0

Query:  120 PEFIPGNIIKNRESLYRLMISQLFYDGHQQIAVQLQNAIQPEPACPPSEKLFHLVNLGMERDTDIKNSRNE---------------VLGPGLDLEFDTDLPSSAPEPAYYETAYVTSHKGNCRAGAFSSDGTLCATGSVDASIKILDVERMLAKSNIEHLSNPNHEQGGHPVIRTLYDHMDEVTALDFHPKEPILASGSRDFTVKLFDFSKTSAKKAMKTITDAEPVTSIAFHPTGDFLLVGCHQPIVRLYDTNTGQCFVGSVPSHHHQREILSVKWSPDGKLYVSASMDGSIKIWDGISSQVIATFANAHDGAEVCSAQFTRNGKYVLSSGKDSLCKLWELSTTRCLIAYTGAGATGKQENRAQAVFNHTEDFVMFPDEATTSLCCWDSRNATRKQLLSLGHNGVVRHIVHSPISPAFLTCSDDFRARFWYKR 538
            PE  P N+IKNRE+LYRLMISQLFYDGHQ IAVQL N IQ EP CPPS++L HL+ LG   + D +  +NE                LGPGLDLE++T+  + APEPA YETAYVTSHKGNCRAGAFS+DG L ATGSVDASIKILDV+RMLAKS  + ++ P  + GGHPVIRTLYDH++EVT L+FHP+EPIL SGSRDF+VKLFDFSK S KKA +TITDA+ +  ++FHPTGDFL+VG + P++RLYD NT QCFV S+P+H H   I SVK+SPD K Y SA  DGSIK+WDG+S++ I TF  AHD  EVCS  FTRNGKY+LSSGKDSL KLWELST+RCLIAYTGAG TGKQE++AQA+FNHTED+VMFPDEATTSLC W+SRNA+RKQLLSLGHNG VR IVHSP +PAFLTCSDDFRARFWY+R
Sbjct:   11 PEIDPKNVIKNRETLYRLMISQLFYDGHQTIAVQLSNLIQAEPPCPPSDRLLHLMLLGTAHEPD-RAKKNEGSNANHTPSFSSFDNTLGPGLDLEYETETQTQAPEPAQYETAYVTSHKGNCRAGAFSADGQLIATGSVDASIKILDVDRMLAKSAPDEMT-PGDQAGGHPVIRTLYDHLEEVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLVVGTNHPVIRLYDINTAQCFVCSIPNHQHTAGITSVKYSPDAKTYASAGKDGSIKLWDGVSNRCINTFVKAHDSYEVCSVAFTRNGKYLLSSGKDSLIKLWELSTSRCLIAYTGAGTTGKQEHKAQAIFNHTEDYVMFPDEATTSLCAWNSRNASRKQLLSLGHNGPVRLIVHSPTAPAFLTCSDDFRARFWYRR 442

The following BLAST results are available for this feature:

BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
BLAST of cleavage stimulation factor 50 kda subunit vs. nr

BLAST of cleavage stimulation factor 50 kda subunit vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25


Match Name	E-value	Identity	Description
EMLSAG00000003862	3.245e-10	21.48	supercontig:LSalAtl2s:LSalAtl2s209:625539:633615:-...	[more]
EMLSAG00000008628	5.465e-10	25.95	supercontig:LSalAtl2s:LSalAtl2s531:15936:18664:1 g...	[more]
EMLSAG00000010784	9.495e-10	22.31	supercontig:LSalAtl2s:LSalAtl2s714:17193:18452:-1 ...	[more]
EMLSAG00000009796	2.674e-9	22.27	supercontig:LSalAtl2s:LSalAtl2s638:23384:28063:-1 ...	[more]
EMLSAG00000001730	4.441e-9	23.58	supercontig:LSalAtl2s:LSalAtl2s129:321159:324031:-...	[more]
EMLSAG00000000430	7.044e-9	22.08	supercontig:LSalAtl2s:LSalAtl2s1068:253244:254083:...	[more]
EMLSAG00000010193	1.070e-8	24.38	supercontig:LSalAtl2s:LSalAtl2s676:312750:314896:1...	[more]
EMLSAG00000011421	1.243e-8	25.50	supercontig:LSalAtl2s:LSalAtl2s78:119197:121424:1 ...	[more]
EMLSAG00000009719	1.492e-8	30.22	supercontig:LSalAtl2s:LSalAtl2s627:20682:23106:-1 ...	[more]
EMLSAG00000005405	3.955e-8	25.56	supercontig:LSalAtl2s:LSalAtl2s290:443342:466882:1...	[more]

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BLAST of cleavage stimulation factor 50 kda subunit vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|67460105\|sp\|Q5BJQ6.1\|CSTF1_RAT	0.000e+0	60.48	RecName: Full=Cleavage stimulation factor subunit ...	[more]
gi\|461848\|sp\|Q05048.1\|CSTF1_HUMAN	0.000e+0	60.48	RecName: Full=Cleavage stimulation factor subunit ...	[more]
gi\|67460449\|sp\|Q5R8K2.1\|CSTF1_PONAB	0.000e+0	60.48	RecName: Full=Cleavage stimulation factor subunit ...	[more]
gi\|75329664\|sp\|Q8L4J2.1\|CTF50_ARATH	2.132e-83	36.59	RecName: Full=Cleavage stimulation factor subunit ...	[more]
gi\|20140995\|sp\|Q8YTC2.1\|Y2800_NOSS1	2.505e-23	27.16	RecName: Full=Uncharacterized WD repeat-containing...	[more]
gi\|74996742\|sp\|Q54KL5.1\|WDR5_DICDI	1.435e-22	28.63	RecName: Full=WD repeat-containing protein 5 homol...	[more]
gi\|75335857\|sp\|Q9M2Z2.1\|WDR5A_ARATH	9.594e-22	24.40	RecName: Full=COMPASS-like H3K4 histone methylase ...	[more]
gi\|3123159\|sp\|Q17963.1\|WDR51_CAEEL	3.661e-21	27.89	RecName: Full=WD repeat-containing protein wdr-5.1	[more]
gi\|20532311\|sp\|Q8YRI1.1\|YY46_NOSS1	6.555e-21	27.01	RecName: Full=Uncharacterized WD repeat-containing...	[more]
gi\|322518324\|sp\|B6GZD3.1\|LIS12_PENCW	2.026e-20	28.37	RecName: Full=Nuclear distribution protein nudF 2;...	[more]

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BLAST of cleavage stimulation factor 50 kda subunit vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|795053941\|ref\|XP_011871011.1\|	0.000e+0	70.30	PREDICTED: cleavage stimulation factor subunit 1 i...	[more]
gi\|815799842\|ref\|XP_012220564.1\|	0.000e+0	70.53	PREDICTED: cleavage stimulation factor subunit 1 [...	[more]
gi\|751218509\|ref\|XP_011162294.1\|	0.000e+0	70.30	PREDICTED: cleavage stimulation factor subunit 1 [...	[more]
gi\|951565066\|ref\|XP_014481393.1\|	0.000e+0	69.79	PREDICTED: cleavage stimulation factor subunit 1 [...	[more]
gi\|826453264\|ref\|XP_012532678.1\|	0.000e+0	70.30	PREDICTED: cleavage stimulation factor subunit 1 i...	[more]
gi\|769832588\|ref\|XP_011643192.1\|	0.000e+0	68.15	PREDICTED: LOW QUALITY PROTEIN: cleavage stimulati...	[more]
gi\|1153833364\|ref\|XP_020293282.1\|	0.000e+0	68.49	cleavage stimulation factor subunit 1 isoform X1 [...	[more]
gi\|225719552\|gb\|ACO15622.1\|	0.000e+0	70.47	Cleavage stimulation factor 50 kDa subunit [Caligu...	[more]
gi\|780628358\|ref\|XP_011684871.1\|	0.000e+0	70.07	PREDICTED: cleavage stimulation factor subunit 1 [...	[more]
gi\|970898967\|ref\|XP_015115117.1\|	0.000e+0	69.59	PREDICTED: cleavage stimulation factor subunit 1 [...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold403_size186359	supercontig	scaffold403_size186359:168922..170880 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold403_size186359-processed-gene-0.17-mRNA-1	snap_masked-scaffold403_size186359-processed-gene-0.17-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold403_size186359:168922..170880+

gene from alignment at scaffold403_size186359:168922..170880+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold403_size186359-processed-gene-0.17 ID=snap_masked-scaffold403_size186359-processed-gene-0.17|Name=cleavage stimulation factor 50 kda subunit|organism=Tigriopus kingsejongensis|type=gene|length=1959bp|location=Sequence derived from alignment at scaffold403_size186359:168922..170880+ (Tigriopus kingsejongensis)
GGTTGCGCGAGTCCAATCAATGTCATGGGTTGCGAATCTGGACTGGGACC
AATGTTGATGTACGAGAAGTTGTCCTCTTGACCACGGATCGACAACGTAA
ATTCTGTGCCTGGAGCCCTGGACCCTCAGCCGGAGGTGTACTACCCGAGA
TGAACCACCCCAATGCCAATTTCGGGGGCGGTAGTGGGTCTAGACCCATG
TTGGGGTACGTATGGGGGTCAATCCTGGTCAGGCCGGGTCAGGTTCACGC
TCGTGGGGTGACTTTCCAGGAGTGGCGGGGGCTTCAACGCCCCTTTCGAG
GGCCCTCGAGGTGGATTCGGTGGAGCCGGACCATTCGGTGGTGGAGGTGG
CCTGAGCGCCAAATTTCCACCTGCGGGTACGCAAGCGAATGCCACCACGT
TGGGAGGCAATCGAGACGCCGCTCCCGAATTCATTCCGGGCAATATCATC
AAGAATCGAGAGAGCCTCTACCGACTCATGATCAGCCAGCTCTTCTACGA
CGGTCACCAGCAGATTGCCGTTCAGCTTCAGAACGCCATTCAGCCTGAGC
CGGCTTGCCCCCCGTCCGAGAAGCTCTTTCATCTCGTCAATCTGGGCATG
GAGCGGGACACAGACATCAAGAACTCTCGCAACGAGGTACTGGGCCCGGG
CCTGGACCTCGAGTTCGACACTGATCTGCCCAGCTCGGCCCCCGAGCCCG
CTTACTACGAGACGGCCTACGTGACCAGCCACAAGGGCAATTGTCGGGCT
GGAGCCTTTTCCTCGGACGGTACGCTCTGTGCCACGGGCTCGGTGGACGC
CTCCATCAAGATTCTAGACGTGGAGCGGATGCTGGCCAAGTCCAATATCG
AGCACTTGTCCAATCCCAACCACGAGCAGGGAGGTCATCCGGTTATTCGG
ACCCTCTACGACCACATGGACGTAAGACCGGGAGGTGGGCCGCTAATTGT
TTATGAATGGGATTGACCGTGGGCTTTCCCTTCCCCAGGAGGTGACTGCG
CTCGATTTTCATCCAAAGGAACCCATTTTGGCCTCCGGCTCACGTGACTT
CACGGTTAAGCTCTTCGATTTTAGCAAGACTTCGGCGAAAAAGGCCATGA
AGACCATCACCGATGCCGAACCGGTCACTTCAATTGCTTTCCATCCCACG
GGTATGTCGAGTCTTGGGTCGAAATGAGGCTACGGGGTGTTCCAAACGCT
CATGTTTCAGGCGACTTCCTGCTGGTGGGCTGCCATCAGCCCATTGTCAG
GCTCTACGACACGAATACGGGACAATGCTTTGTGGGGAGCGTTCCCAGTC
ACCACCACCAAAGGGAAATCTTGAGCGTCAAGTGGTCCCCCGACGGCAAG
GTAACCGCCTATCTGGGCCTCTTTTCAATGCTTCGCGAGCTTACTCTCCG
TCTTTGCAGCTGTACGTCTCCGCCTCTATGGACGGTTCCATCAAAATATG
GGACGGGATATCGAGCCAAGTGATTGCCACTTTTGCCAATGCCCACGACG
GGGCTGAGGTCTGCTCGGCTCAATTCACCCGGAACGGAAAGTACGTGCTG
TCATCGGGCAAGGATTCATTGTGCAAGCTATGGGAGTTGTCGACCACTCG
ATGTTTGATCGCCTACACTGGAGCGGGAGCCACCGGAAAGCAGGTGAGAC
CCGACCTTCATTGGCCGTCACAGTCACACCCATCTCAATCCATGCGCATT
TTCCAGGAGAATCGAGCCCAAGCTGTCTTCAATCACACGGAGGATTTCGT
GATGTTCCCGGACGAGGCCACCACCTCACTTTGTTGCTGGGACTCTCGTA
ATGCCACGCGGAAACAGCTTCTCTCTCTGGGTCACAACGGTGTGGTTCGA
CATATTGTCCACTCTCCAATCTCGCCGGCATTCCTGACGTGCTCCGATGA
TTTTCGGGCAAGGTTTTGGTACAAACGCCCCATTTCTCAATGAGCGGGGG
CTATGAAAA

Synonyms

The feature 'cleavage stimulation factor 50 kda subunit' has the following synonyms


Synonym
Tk07437

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