vesicle transport protein use1-like isoform x2, snap_masked-scaffold474_size162001-processed-gene-0.23 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of vesicle transport protein use1-like isoform x2 vs. L. salmonis genes
Match: EMLSAG00000005945 (supercontig:LSalAtl2s:LSalAtl2s321:154585:156007:1 gene:EMLSAG00000005945 transcript:EMLSAT00000005945 description:"maker-LSalAtl2s321-augustus-gene-1.28") HSP 1 Score: 107.071 bits (266), Expect = 2.152e-27 Identity = 56/154 (36.36%), Postives = 90/154 (58.44%), Query Frame = 0 Query: 164 VAPLPAAARQAHPVSQQLFRQLTERGHGRERHELLGQSDAELRRRLPVPVDGALSDLVQAHHDAQEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELAEVNRGRLGVEAERLSQHTRQL-CRWWIWLIILIVTVTFVAMVMIMKVFRK 316 + P P A V +++FR+ ER ++R EL + E R + + L+ AQE++AE+M+ LT+SLK + AA +I +D +SLE T A+ N +L VE++RL +H CR WIW+++ IV +TF+ M++IMK+F+K Sbjct: 120 IPPPPLANLDNDSVQKEIFRKTIERYRAQDRKELFESNKGESSRLRKRRDEQSAQSLIHDQDVAQEEIAEQMLSLTKSLKEQTEAANRMIHRDISSLEGTRRTADENIBKLAVESDRLQEHRSTFNCRCWIWILMFIVVMTFLKMLVIMKLFKK 273
BLAST of vesicle transport protein use1-like isoform x2 vs. SwissProt
Match: gi|83288173|sp|Q7ZTY7.1|USE1_DANRE (RecName: Full=Vesicle transport protein USE1; AltName: Full=USE1-like protein) HSP 1 Score: 110.538 bits (275), Expect = 2.011e-27 Identity = 55/159 (34.59%), Postives = 99/159 (62.26%), Query Frame = 0 Query: 168 PAAARQAHPVSQQLFRQLTERGHGRERHELL--GQSDA-----ELRRRLPVPVD-----GALSDLVQAHHDAQEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELAEVNRGRLGVEAERLSQHTRQLCRWWIWLIILIVTVTFVAMVMIMKVF 314 P + + P S+ + Q R G R EL+ G S++ +LR R +PVD L ++Q HH+ QE++A++M+ L R+LK ++LAA +II+QD +L ++ A+VN +L E+ERL QH ++ W++WL++++V+ TF++M++ +++F Sbjct: 96 PTISSERTPASKTVHIQSKARCAGEMRKELMSSGVSNSALLENDLRHRKSLPVDERQSAAELDQILQHHHNLQEKLADDMLNLARNLKNNTLAAQNIIKQDNQTLTQSMRQADVNFEKLKTESERLEQHAKKSVNWFLWLMLIVVSFTFISMILFIRLF 254
BLAST of vesicle transport protein use1-like isoform x2 vs. SwissProt
Match: gi|83288174|sp|Q9VSU7.3|USE1_DROME (RecName: Full=Vesicle transport protein USE1; AltName: Full=USE1-like protein) HSP 1 Score: 96.2857 bits (238), Expect = 4.284e-22 Identity = 59/179 (32.96%), Postives = 93/179 (51.96%), Query Frame = 0 Query: 163 GVAPLPAAA----RQAHPVSQ------QLFRQL-TERGHGRERHELLGQSDAELRRR-------------LPVPVDGALSDLVQAHHDAQEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELAEVNRGRLGVEAERLSQHTRQLCRWWIWLIILIVTVTFVAMVMIMKVFRKR 317 G A +P + Q+ VS+ + RQL + H R ELL SDA RRR + ++ + + +AQE++ E M+ LTR+LK + A IIR+DT + R+ +A+ N LG EAE+L QH+++ + W+WL+I V TF+ MV+ MK+ +K+ Sbjct: 70 GYADVPGSTTKTPSQSSAVSETGENALKEIRQLQNSKYHNELRKELLQDSDALRRRRGADESSSSSGSANVQETSGENMNQAAKYYTNAQEKITEHMLSLTRNLKEQTETANRIIRRDTEVVSRSAGMADRNINSLGKEAEKLEQHSKKAYKCWLWLMIAFVIATFIGMVLFMKIMKKK 248
BLAST of vesicle transport protein use1-like isoform x2 vs. SwissProt
Match: gi|296452858|sp|Q9NZ43.2|USE1_HUMAN (RecName: Full=Vesicle transport protein USE1; AltName: Full=Putative MAPK-activating protein PM26; AltName: Full=USE1-like protein; AltName: Full=p31) HSP 1 Score: 96.2857 bits (238), Expect = 4.510e-22 Identity = 57/161 (35.40%), Postives = 93/161 (57.76%), Query Frame = 0 Query: 167 LPAAARQAHPVSQQLFRQLTERGHGRERHELLGQSDAE----LRRRLPV----PVD----GALSDLV-QAHHDAQEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELAEVNRGRLGVEAERLSQHTRQLCRWWIWLIILIVTVTFVAMVMIMKVF 314 +P AR+ P ++ + Q R R ELLG AE +R+R V PV A DLV Q H + QE++AEEM+ L RSLK ++LAA +I++D +L + ++A+ N +L E+ERL QHT++ W +W +++IV F++M++ +++ Sbjct: 95 VPTTARERVPATKTVHLQSRARYTSEMRSELLGTDSAEPEMDVRKRTGVAGSQPVSEKQLAAELDLVLQRHQNLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKTESERLEQHTQKSVNWLLWAMLIIVCFIFISMILFIRIM 255
BLAST of vesicle transport protein use1-like isoform x2 vs. SwissProt
Match: gi|78103352|sp|Q9CQ56.1|USE1_MOUSE (RecName: Full=Vesicle transport protein USE1; AltName: Full=Protein D12; AltName: Full=USE1-like protein) HSP 1 Score: 89.3521 bits (220), Expect = 2.072e-19 Identity = 48/161 (29.81%), Postives = 91/161 (56.52%), Query Frame = 0 Query: 167 LPAAARQAHPVSQQLFRQLTERGHGRERHELLG-----QSDAELRRRLPV---PVD-----GALSDLVQAHHDAQEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELAEVNRGRLGVEAERLSQHTRQLCRWWIWLIILIVTVTFVAMVMIMKVF 314 +P A++ P ++ + Q R R ELLG + + ++R+R P D L ++Q H QE++AEEM+ L RSLK ++LAA +I++D +L + ++A+ N +L +E+ERL QH ++ W +W ++++V F++M++ +++ Sbjct: 106 VPTTAKERVPATKTVHLQSRARYTSEMRSELLGMEPSGECEVDMRKRAAKGSRPADERQSASELDLVLQRHQGLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKMADQNLEKLKLESERLEQHAQKSVNWLLWAMLIVVCFVFISMILFIRIM 266
BLAST of vesicle transport protein use1-like isoform x2 vs. SwissProt
Match: gi|68065391|sp|Q9N598.2|USE1_CAEEL (RecName: Full=Vesicle transport protein USE1; AltName: Full=USE1-like protein) HSP 1 Score: 62.3882 bits (150), Expect = 4.557e-10 Identity = 35/94 (37.23%), Postives = 62/94 (65.96%), Query Frame = 0 Query: 228 QEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELA-EV--NRGRLGVEAERLSQHTRQLCRWWIWLIILIVTV--TFVAMVMIMKVFRK 316 +E++A + + RS K AAGD+I++DT ER +A EV N+ LG+++ER+ +H + C + + ++LIV + +FV+MV++MK+F+K Sbjct: 162 EEELANSLATMARSFKTMMSAAGDVIKEDT---ERAILMAKEVDDNKTALGIQSERVERHAYK-CGYDCFKVMLIVLIFMSFVSMVLMMKIFKK 251
BLAST of vesicle transport protein use1-like isoform x2 vs. nr
Match: gi|1316108816|ref|XP_023194894.1| (vesicle transport protein USE1 isoform X2 [Xiphophorus maculatus]) HSP 1 Score: 115.546 bits (288), Expect = 9.764e-27 Identity = 56/156 (35.90%), Postives = 97/156 (62.18%), Query Frame = 0 Query: 168 PAAARQAHPVSQQLFRQLTERGHGRERHELLGQ----SDAELRRRLPVPVD-----GALSDLVQAHHDAQEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELAEVNRGRLGVEAERLSQHTRQLCRWWIWLIILIVTVTFVAMVMIMKVF 314 P A + P ++ + Q R G R ELLG D +LR R +P+D L ++Q HH+ QE++AE+M+ L R+LK ++LAA +II+QD +L ++ A++N +L E+ERL QHT++ W +WL++++V+ TF++M++ +++F Sbjct: 95 PTIANERMPATKTVHIQSKARFTGEMRDELLGTRMSVKDGDLRNRRVLPLDERQSAAELDAVMQHHHNLQEKLAEDMLNLARNLKNNTLAAQNIIKQDNQTLSQSMRQADLNFEKLKTESERLEQHTKKSVNWLLWLMLILVSFTFISMILFIRIF 250
BLAST of vesicle transport protein use1-like isoform x2 vs. nr
Match: gi|961863367|ref|XP_014893169.1| (PREDICTED: vesicle transport protein USE1 isoform X1 [Poecilia latipinna]) HSP 1 Score: 115.931 bits (289), Expect = 1.059e-26 Identity = 56/157 (35.67%), Postives = 99/157 (63.06%), Query Frame = 0 Query: 168 PAAARQAHPVSQQLFRQLTERGHGRERHELLG-----QSDAELRRRLPVPVD-----GALSDLVQAHHDAQEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELAEVNRGRLGVEAERLSQHTRQLCRWWIWLIILIVTVTFVAMVMIMKVF 314 P A + P ++ + Q R G R ELLG ++D +LR R +P+D L ++Q HH+ QE++AE+M+ L R+LK ++LAA +II+QD +L ++ A++N +L E+ERL QHT++ W +WL++++V+ TF++M++ +++F Sbjct: 117 PTIANERMPATKTVHIQSKARCTGEMRDELLGTRTSGKADGDLRNRRVLPLDERQSAAELDAVLQHHHNLQEKLAEDMLNLARNLKNNTLAAQNIIKQDNQTLSQSMRQADLNFEKLKTESERLEQHTKKSVNWLLWLMLILVSFTFISMILFIRIF 273
BLAST of vesicle transport protein use1-like isoform x2 vs. nr
Match: gi|1079720044|ref|XP_018528791.1| (PREDICTED: vesicle transport protein USE1 isoform X1 [Lates calcarifer]) HSP 1 Score: 115.161 bits (287), Expect = 1.090e-26 Identity = 55/159 (34.59%), Postives = 99/159 (62.26%), Query Frame = 0 Query: 168 PAAARQAHPVSQQLFRQLTERGHGRERHELLGQ-------SDAELRRRLPVPVD-----GALSDLVQAHHDAQEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELAEVNRGRLGVEAERLSQHTRQLCRWWIWLIILIVTVTFVAMVMIMKVF 314 P A + P ++ + Q R G R+ELLG S+ +LR R +P+D L ++Q HH+ QE++AE+M+ L R+LK +++AA +II+QD +L ++ A++N +L E+ERL QHT++ W +WL++++V+ TF++M++ +++F Sbjct: 95 PTIANERMPATKTVHMQTKARCTGEMRNELLGTILSGKGTSETDLRNRRGLPLDERQSAAELDAVLQHHHNLQEKLAEDMLNLARNLKNNTMAAQNIIKQDNQTLSQSMRQADLNFEKLKTESERLEQHTKKSVNWLLWLMLILVSFTFISMILFIRIF 253
BLAST of vesicle transport protein use1-like isoform x2 vs. nr
Match: gi|1143365386|ref|XP_019935979.1| (PREDICTED: vesicle transport protein USE1 isoform X2 [Paralichthys olivaceus]) HSP 1 Score: 115.161 bits (287), Expect = 1.216e-26 Identity = 55/159 (34.59%), Postives = 99/159 (62.26%), Query Frame = 0 Query: 168 PAAARQAHPVSQQLFRQLTERGHGRERHELLGQ-------SDAELRRRLPVPVD-----GALSDLVQAHHDAQEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELAEVNRGRLGVEAERLSQHTRQLCRWWIWLIILIVTVTFVAMVMIMKVF 314 P A + P ++ + Q R G R ELLG+ S+ +LR R VP+D L ++Q HH+ QE++AE+M+ L R+LK +++AA +II+QD +L ++ A++N +L E+ERL QHT++ W +W+++++V+ TF++M++ +++F Sbjct: 87 PTIANERMPATKTVHIQTKARCTGEMRDELLGKVPSGKGTSETDLRNRRGVPLDERQSAAELDAVLQHHHNLQEKLAEDMLNLARNLKNNTMAAQNIIKQDNQTLSQSMRQADLNFEKLKTESERLEQHTKKSVNWLLWMMLILVSFTFISMILFIRIF 245
BLAST of vesicle transport protein use1-like isoform x2 vs. nr
Match: gi|1228007815|ref|XP_021935817.1| (vesicle transport protein USE1 isoform X1 [Zootermopsis nevadensis] >gi|1228007817|ref|XP_021935818.1| vesicle transport protein USE1 isoform X1 [Zootermopsis nevadensis]) HSP 1 Score: 115.546 bits (288), Expect = 1.344e-26 Identity = 79/266 (29.70%), Postives = 139/266 (52.26%), Query Frame = 0 Query: 63 ARTRTNLRRMAARVTRLAQRHPPPSPEDLRDYR--DQVQFLTRTLAHLAPPTRDPSVALGVDVPGLALTRDSPLQFPRRV----GSAAPARRDSPAAAPLPV-VRPYGVAPLPAAARQAHPVSQQLFRQLTERGHGRERHELLGQ----SDAELRRRLPVPVDGALSDLVQAHHDAQEQVAEEMIQLTRSLKAHSLAAGDIIRQDTASLERTNELAEVNRGRLGVEAERLSQHTRQLCRWWIWLIILIVTVTFVAMVMIMKVFRKR 317 ++ NLRR+ ++ +A+ P +D+R + L + +L PS +D+ ++ RRV G + +PA + V + P+G PA + +A V++++ Q T + +E E L Q SD LR+R L L++ HH QE++A++M+ L R+LK S AG IIR+DT ++ +++ +A+ N RL VE+ERL +H+R+ C+ WIW+++ V + F+ MV+ MK+ +K+ Sbjct: 36 SKLEVNLRRLLSQCENMAKEDPQ------KDWRLDKYIGALDEMVTNLQKLPNKPS-------------KDTMAEYIRRVLFLKGIIETHKLTNPAEKIVAVQLVPHG----PATSSEA--VTKEI-HQTTASKYAKELREQLLQNGSGSDKNLRQRKQKSGGEDLDALIKYHHSMQEKIADDMLLLARNLKEQSQLAGSIIRRDTETVGKSSNMADHNFARLKVESERLEEHSRRACKCWIWVMVAAVVIIFINMVLFMKIMKKK 275 The following BLAST results are available for this feature:
BLAST of vesicle transport protein use1-like isoform x2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of vesicle transport protein use1-like isoform x2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 5
BLAST of vesicle transport protein use1-like isoform x2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold474_size162001:137880..141845- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold474_size162001-processed-gene-0.23 ID=snap_masked-scaffold474_size162001-processed-gene-0.23|Name=vesicle transport protein use1-like isoform x2|organism=Tigriopus kingsejongensis|type=gene|length=3966bp|location=Sequence derived from alignment at scaffold474_size162001:137880..141845- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'vesicle transport protein use1-like isoform x2' has the following synonyms
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