cleavage and polyadenylation specificity factor subunit 3, snap_masked-scaffold495_size155559-processed-gene-0.4 (gene) Tigriopus kingsejongensis

Overview


Name	cleavage and polyadenylation specificity factor subunit 3
Unique Name	snap_masked-scaffold495_size155559-processed-gene-0.4
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
Match: EMLSAG00000007282 (supercontig:LSalAtl2s:LSalAtl2s409:129273:131364:-1 gene:EMLSAG00000007282 transcript:EMLSAT00000007282 description:"maker-LSalAtl2s409-augustus-gene-1.22")

HSP 1 Score: 1170.61 bits (3027), Expect = 0.000e+0
Identity = 541/673 (80.39%), Postives = 613/673 (91.08%), Query Frame = 0

Query:   17 SSDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEKPRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSLM 689
            + ++ D+M  RPLGAGQEVGRSCH+LEFKDKR+LLDCGIHPGL+GMDALPFVD+IEAD+IDLLL+SHFHLDHAGALPWFL+KTTFKGK FMTHATKAIYRWLLSD+IKVSNI+TEQMLYSEQDLE SMEKI TLNFHEEKEV GI+FWAYNAGHVLGA MFMIEIAGVR LYTGDFSREEDRHLMA E P+L+P VLI+E+TYGT+IHEKREDRE RFTST+H+IV RGGRCLIPVFALGRAQELLLILDEYW AHPELHEIPIYYASSLAKKCMAVYQTFVNAMN++IRRQI+V+NPFVFKHISNLKGIDHFDD+GPCVILASPGMMQSGLSRELFESWC+D KNGCIVAGYCVEGTLAKHILSEPEE+ +MNGQ+LPLK+QV+YISFSAHTDYKQTSGFIR LKPPHVILVHGEANEMSRLKSALIREYEADP T IDFYNPRNTV+VDL+FRGEKMAKV+G+LA++ PI +HRVSG+LVKRNFNYHIL+ +DL KYTDMT S VTQRQS+YY GSFQLLQF++SQ   D+     +++ KK IR F +ID++HE +M+TLEWIASPVNDMYADAVLSA+LQAES++ P+YIP NA+VD MHFKEC +E+LQDMFGEESVP TFSGD+F + V +KKA ID+ +L+V C ED+    I++TA +KL  SL+
Sbjct:    4 NGEDSDRMVFRPLGAGQEVGRSCHLLEFKDKRILLDCGIHPGLSGMDALPFVDLIEADEIDLLLVSHFHLDHAGALPWFLEKTTFKGKVFMTHATKAIYRWLLSDYIKVSNISTEQMLYSEQDLEASMEKIQTLNFHEEKEVKGIRFWAYNAGHVLGAXMFMIEIAGVRTLYTGDFSREEDRHLMAXEXPSLKPHVLILESTYGTNIHEKREDRESRFTSTVHDIVTRGGRCLIPVFALGRAQELLLILDEYWGAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNERIRRQISVNNPFVFKHISNLKGIDHFDDVGPCVILASPGMMQSGLSRELFESWCSDPKNGCIVAGYCVEGTLAKHILSEPEEVASMNGQKLPLKMQVNYISFSAHTDYKQTSGFIRELKPPHVILVHGEANEMSRLKSALIREYEADPSTKIDFYNPRNTVSVDLFFRGEKMAKVMGSLAVDPPIQEHRVSGILVKRNFNYHILSPSDLPKYTDMTTSVVTQRQSIYYSGSFQLLQFMISQFGCDVTTPKEKEKKKKYIRVFDSIDVIHEDKMITLEWIASPVNDMYADAVLSAILQAESLDTPQYIPANARVDKMHFKECCIELLQDMFGEESVPKTFSGDKFGVIVHNKKALIDLKTLEVSCNEDETFGKIVETAITKLHESLV 676

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
Match: EMLSAG00000000010 (supercontig:LSalAtl2s:LSalAtl2s1003:5798:7615:-1 gene:EMLSAG00000000010 transcript:EMLSAT00000000010 description:"augustus_masked-LSalAtl2s1003-processed-gene-0.0")

HSP 1 Score: 332.413 bits (851), Expect = 2.430e-105
Identity = 192/552 (34.78%), Postives = 300/552 (54.35%), Query Frame = 0

Query:   22 DKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIE-------ADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVS-NIATEQMLYSEQDLETSMEKIDTLNFHEEKEVN-GIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRN----TVAVDLYFRGEKMAKVVGNLAME---KPIDDHR---VSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQ-----LLQFLVSQLSGDL 549
            +++ + PLGAGQ+VGRSC ++    K ++LDCG+H G N     P    IE          +D ++ISHFHLDH GALP+  +   + G  +MTH TKAI   LL D  +V+     E   ++   ++  M+K+  ++ H+   V+  ++  AY AGHVLGAAMF +++    ++YTGD++   DRHL AA +   RPD+LI E+TY T + + +  RE  F   +H+ V RGG+ LIPVFALGRAQEL ++L+ YW       ++PI++++ L +K    Y+ F+   N+KIR+     N F FK I  L    +  + GP V+ A+PGM+  GLS  +FE WCT+  N  I+ GYCV GT+   IL+   ++    G+ + +K+ V Y+SFSAH D K     I   +P +V+LVHGE  +M  LK+ +  E+       +  + P N    T++  +   G   + ++    ++   KP D  R   + GV+V ++    IL    + +   +   T+    +V +    Q     + Q L + +S DL
Sbjct:    3 EEIRVTPLGAGQDVGRSCLLVSIGGKNLMLDCGMHMGYNDERRFPDFSFIEDTPGAPLTPHLDAVIISHFHLDHCGALPYMTEMVGYSGPIYMTHPTKAIAPILLEDMRRVAVERKGESNFFTSAMIKECMKKVVAVHLHQVIRVDESLEIKAYYAGHVLGAAMFQVKVGNRSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTVRDSKRCRERDFLKKVHDCVERGGKVLIPVFALGRAQELCILLETYWDRMN--LKVPIFFSTGLTEKATNYYKMFITWTNEKIRKTFVERNMFDFKFIKPLDRA-YIQNPGPMVVFATPGMLHGGLSLAIFEEWCTNELNMIIMPGYCVAGTVGHKILNGTRKLEFSKGKTVEVKMSVQYMSFSAHADAKGIMQLISYCEPKNVMLVHGEQAKMEFLKAKIESEH------GVQCFMPANGETATISCPITLEGCVSSSIIKKEHLKYALKPPDPKRARLLHGVIVMKDETLSILDPEKIAEEFGIQSHTIRYTLNVPFRNEVQSPLSAVAQKLYNAISRDL 545

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
Match: EMLSAG00000011843 (supercontig:LSalAtl2s:LSalAtl2s831:281816:286361:1 gene:EMLSAG00000011843 transcript:EMLSAT00000011843 description:"snap_masked-LSalAtl2s831-processed-gene-2.5")

HSP 1 Score: 140.969 bits (354), Expect = 4.177e-35
Identity = 101/366 (27.60%), Postives = 176/366 (48.09%), Query Frame = 0

Query:   28 PLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHE----EKEVNGIKFWAYNAGHVLGAAMFMIEIAGVR-VLYTGDFSREEDRHLMAAELPTL-RPDVLIVEA-TYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPE-LHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQI--AVSNPFVFKHISNLKGIDHFDDI-GPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSE 382
            PL  G+  G  C++LE  D   LLD G  P  N         +  A KID +L+S+  LDH GALP+ + K       F T     + +  + D  +      +  L++  +++++ +KI  L +++    + +  GI      AGH++G  ++ I   G   ++Y  DF+ +++RHL   +L  L RP +LI +A   G H   +R  R+ +  + I + +   G  LI     GR  EL  ++D+ W      L    +   ++ +   +   ++ +  M++K+ +      +NPF FKH+     ++  + +  P V+LAS   M+SG SRELF  WCT+ KN  I+       TLA  ++++
Sbjct:    9 PLSGGRSEGPHCYLLEVDDYNFLLDVGWDPFFNSKLKKEIKKV--ASKIDAVLLSYPDLDHLGALPYAVGKLGLSCSIFATVPVHKMGQMFMYDVYEAQRKQEDFDLFTLDEVDSAFDKITQLKYNQTFALKGKGEGISITPIPAGHMIGGTIWKIVKDGEEDIIYAVDFNHKKERHLNGCDLDKLLRPSILITDAFNIGCH-QLRRRVRDEKIMTNILQTLRNNGNVLICTDTAGRVLELAHMVDQLWQNRDSGLLAYSLALVNNFSYSVVEFAKSQIEWMSEKLMKTFEGKRNNPFQFKHLKLCHSMNEVNKVPSPKVVLASMPDMESGYSRELFIQWCTNPKNSIILTSRSPANTLAYDLMTK 371

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
Match: EMLSAG00000011315 (supercontig:LSalAtl2s:LSalAtl2s77:664263:677061:-1 gene:EMLSAG00000011315 transcript:EMLSAT00000011315 description:"maker-LSalAtl2s77-augustus-gene-6.22")

HSP 1 Score: 78.9518 bits (193), Expect = 2.971e-15
Identity = 94/475 (19.79%), Postives = 176/475 (37.05%), Query Frame = 0

Query:   37 RSCHILEFKDKRVLLDCGIH-------------------------PGLNGMD---------------------ALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIK------------------------------VSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNG-IKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVS-NPFVFKHISNLKGIDHFDDI----------GPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKP 423
            + C++L FK  R++LDCG+                          PG+  M+                       P   + +   ID++LIS++      ALP+  +++ FKG  +MT  T  I R  + + I+                              VSN  + + +Y+ + +E+S+ K+  + + E+K+V G +     ++G+ LG++ ++I     ++ Y    S          ++P    D LI+ +   T   +  +     F  ++ E    GG  L+P +  G   +L   L     AH  L  IP+Y+ S +A   +A        ++   + ++ +   PF    ++    +  F  +           PC++      ++ G      E W ++S N           T+     S P E      Q  PL ++V +       ++ Q    IR LKP
Sbjct:  756 KPCYVLNFKGVRIMLDCGLDLSTALHYLPIPLVHSQKLSNLGNYVPGIENMNFCEGELKDCNGKIFVDSSPEFCTPHSGLFDFADIDVILISNYTC--MLALPYVTEESGFKGIVYMTEPTLHIGRLFMEETIEYMERTALSSRHSSSGSWKDILHALPPPLCDVSNPRSWKRIYNRKQMESSLSKVQLMGYSEKKDVFGLLTVSPVSSGYCLGSSNWIISSGFEKIGYVSGTSTLTTHPRPLNQIPLRNVDCLIMTSLTQTPT-QMPDPMIGEFCKSVVETTRLGGNVLVPCYPSGITYDLFECLAGQMDAH-SLCTIPMYFVSPVADSSLAYSNIMAEWLSQSKQNKVYLPEEPFPHGGLARNGRLKSFRTMHDENFSNEYRQPCIMFCGHPSLRFGEVIHFIELWGSNSNN-----------TIVFTEPSFPYEAALAPFQ--PLHMKVIHCPIDTSLNFSQAKKLIRDLKP 1213

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|74947821|sp|Q9VE51.2|CPSF3_DROME (RecName: Full=Cleavage and polyadenylation specificity factor 73)

HSP 1 Score: 967.992 bits (2501), Expect = 0.000e+0
Identity = 452/673 (67.16%), Postives = 562/673 (83.51%), Query Frame = 0

Query:   19 DEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQL-SGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAE-SIEKPRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSLM 689
            +E D + I+PLGAGQEVGRSC +LEFK K+++LDCGIHPGL+GMDALP+VD+IEAD+IDLL ISHFHLDH GALPWFL KT+FKG+CFMTHATKAIYRW+LSD+IK+SNI+TEQMLY+E DLE SMEKI+T+NFHEE++V G++F AY AGHVLGAAMFMIEIAG+++LYTGDFSR+EDRHLMAAE+P ++PDVLI E+TYGTHIHEKREDRE+RFTS + +IV +GGRCLIPVFALGRAQELLLILDE+W+ +P+LHEIPIYYASSLAKKCMAVYQT++NAMND+IRRQIAV+NPFVF+HISNLKGIDHF+DIGPCVI+ASPGMMQSGLSRELFESWCTD KNG I+AGYCVEGTLAK +LSEPEEIT ++GQ+LPL + V YISFSAHTDY+QTS FIR LKP HV+LVHGE NEMSRLK AL REYEAD  T+I FYNPRNT AVDLYFRGEK AKV+G+LA +      ++SGVLVKR+F YH+LA +DL KYTDM++S VTQRQS+ +  S   L+ L+ ++ +G +E+++ E++    +R FG I++  E++++ +EW A+ VND+YADAVL+ ++Q+E      +      K +   F+ECL+E LQD FG+  VP  F GD   +TV  K+A I++ +L + C EDD+L+ ++ T   KL  +L+
Sbjct:   13 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLLFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEADLEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVKRDFKYHLLAPSDLGKYTDMSMSVVTQRQSIPWGSSLSTLELLLDRIGAGCVEVLEAERK----LRVFGCIELTVEQKIIVMEWQATHVNDVYADAVLACIMQSELGGTNLKGATKQTKSEDSRFRECLIETLQDTFGDNCVPKMFEGDLLPVTVSGKRAEINLETLAISCAEDDVLRQMLNTTVQKLHQTLV 681

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|18202362|sp|P79101.1|CPSF3_BOVIN (RecName: Full=Cleavage and polyadenylation specificity factor subunit 3; AltName: Full=Cleavage and polyadenylation specificity factor 73 kDa subunit; Short=CPSF 73 kDa subunit; AltName: Full=mRNA 3'-end-processing endonuclease CPSF-73)

HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 449/678 (66.22%), Postives = 556/678 (82.01%), Query Frame = 0

Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAES---IEKPRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPE----DDMLQNIIQTACSKLKLSL 688
            ++E D++ IRPLGAGQEVGRSC ILEFK ++++LDCGIHPGL GMDALP++D+I+  +IDLLLISHFHLDH GALPWFLQKT+FKG+ FMTHATKAIYRWLLSD++KVSNI+ + MLY+E DLE SM+KI+T+NFHE KEV GIKFW Y+AGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P ++PD+LI+E+TYGTHIHEKRE+RE RF +T+H+IVNRGGR LIPVFALGRAQELLLILDEYW  HPELH+IPIYYASSLAKKCMAVYQT+VNAMNDKIR+QI ++NPFVFKHISNLK +DHFDDIGP V++ASPGMMQSGLSRELFESWCTD +NG I+AGYCVEGTLAKHI+SEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIRALKPPHVILVHGE NEM+RLK+ALIREYE + + +I+ +NPRNT AV L FRGEK+AKV+G LA +KP    RVSG+LVKRNFNYHIL+  DL  YTD+ +STV Q Q++ Y G F LL + + +L+GD+E  + E + K  ++ F  I ++ E  MV LEW+A+P NDMYAD V + +L+ +S   I K      + K++M  + + L  MLQD+FGE+ V +   G    +TV+ K A+I++ +  V+C E    D+ L+ +++ A  +L  +L
Sbjct:    6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVE--ELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCV-SVKDGSILSVTVDGKTANINLETRTVECEEGSEDDESLREMVELAAQRLYEAL 680

[Close]

BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|341940395|sp|Q9QXK7.2|CPSF3_MOUSE (RecName: Full=Cleavage and polyadenylation specificity factor subunit 3; AltName: Full=Cleavage and polyadenylation specificity factor 73 kDa subunit; Short=CPSF 73 kDa subunit; Short=mRNA 3'-end-processing endonuclease CPSF-73)

HSP 1 Score: 948.732 bits (2451), Expect = 0.000e+0
Identity = 447/678 (65.93%), Postives = 556/678 (82.01%), Query Frame = 0

Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAES---IEKPRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPE----DDMLQNIIQTACSKLKLSL 688
            ++E D++ IRPLGAGQEVGRSC ILEFK ++++LDCGIHPGL GMDALP++D+I+  +IDLLLISHFHLDH GALPWFLQKT+FKG+ FMTHATKAIYRWLLSD++KVSNI+ + MLY+E DLE SM+KI+T+NFHE KEV GIKFW Y+AGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P ++PD+LI+E+TYGTHIHEKRE+RE RF +T+H+IVNRGGR LIPVFALGRAQELLLILDEYW  HPELH+IPIYYASSLAKKCMAVYQT+VNAMNDKIR+QI ++NPFVFKHISNLK +DHFDDIGP V++ASPGM+Q+GLSRELFESWCTD +NG I+AGYCVEGTLAKHI+SEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIRALKPPHVILVHGE NEM+RLK+ALIREYE + + +I+ +NPRNT AV L FRGEK+AKV+G LA +KP    RVSG+LVKRNFNYHIL+  DL  YTD+ +STV Q Q++ Y G F LL + + +L+GD+E  + E + K  ++ F +I +V E  MV LEW+A+P NDMYAD V + +L+ +S   I K      + K++M  + + L  MLQD+FGE+ V +        +TV+ K A+I++ +  V+C E    D+ L+ +++ A  +L  +L
Sbjct:    6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVE--ELEIQEKPALKVFKSITVVQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEVMLQDIFGEDCV-SVKDDSVLSVTVDGKTANINLETRAVECEEGSEDDESLREMVELAAQRLYEAL 680

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|18203503|sp|Q9UKF6.1|CPSF3_HUMAN (RecName: Full=Cleavage and polyadenylation specificity factor subunit 3; AltName: Full=Cleavage and polyadenylation specificity factor 73 kDa subunit; Short=CPSF 73 kDa subunit; AltName: Full=mRNA 3'-end-processing endonuclease CPSF-73)

HSP 1 Score: 948.347 bits (2450), Expect = 0.000e+0
Identity = 447/678 (65.93%), Postives = 555/678 (81.86%), Query Frame = 0

Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAES---IEKPRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPE----DDMLQNIIQTACSKLKLSL 688
            ++E D++ IRPLGAGQEVGRSC ILEFK ++++LDCGIHPGL GMDALP++D+I+  +IDLLLISHFHLDH GALPWFLQKT+FKG+ FMTHATKAIYRWLLSD++KVSNI+ + MLY+E DLE SM+KI+T+NFHE KEV GIKFW Y+AGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P ++PD+LI+E+TYGTHIHEKRE+RE RF +T+H+IVNRGGR LIPVFALGRAQELLLILDEYW  HPELH+IPIYYASSLAKKCMAVYQT+VNAMNDKIR+QI ++NPFVFKHISNLK +DHFDDIGP V++ASPGMMQSGLSRELFESWCTD +NG I+AGYCVEGTLAKHI+SEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIRALKPPHVILVHGE NEM+RLK+ALIREYE + + +I+ +NPRNT AV L FRGEK+AKV+G LA +KP    RVSG+LVKRNFNYHIL+  DL  YTD+ +STV Q Q++ Y G F LL + + +L+GD+E  + E + K  ++ F  I ++ E  MV LEW+A+P NDMYAD V + +L+ +S   I K      + K++M  + + L  MLQD+FGE+ V +        +TV+ K A++++ +  V+C E    D+ L+ +++ A  +L  +L
Sbjct:    6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVE--ELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCV-SVKDDSILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEAL 680

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|75262219|sp|Q9C952.1|CPSF3_ARATH (RecName: Full=Cleavage and polyadenylation specificity factor subunit 3-I; AltName: Full=Cleavage and polyadenylation specificity factor 73 kDa subunit I; Short=AtCPSF73-I; Short=CPSF 73 kDa subunit I)

HSP 1 Score: 718.383 bits (1853), Expect = 0.000e+0
Identity = 329/610 (53.93%), Postives = 445/610 (72.95%), Query Frame = 0

Query:    2 ALKRAHSPGFIVESTSSDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHE-KRMVTLEWIASPVNDMYADAVLSAVLQAESIEKPRYI 610
            +LKR   P        S + D++ + PLGAG EVGRSC  + F+ K +L DCGIHP  +GM ALP+ D I+   ID+LLI+HFH+DHA +LP+FL+KTTF G+ FMTHATKAIY+ LL+D++KVS ++ E ML+ EQD+  SM+KI+ ++FH+  EVNGIKFW Y AGHVLGAAMFM++IAGVR+LYTGD+SREEDRHL AAELP   PD+ I+E+T G  +H+ R  RE RFT  IH  V +GGR LIP FALGRAQELLLILDEYWA HP+LH IPIYYAS LAKKCMAVYQT++ +MND+IR Q A SNPFVFKHIS L  ID F+D+GP V++A+PG +QSGLSR+LF+SWC+D KN CI+ GY VEGTLAK I++EP+E+T MNG   PL +QV YISFSAH DY QTS F++ L PP++ILVHGEANEM RLK  L+ E+   PD N     P+N  +V++YF  EK+AK +G LA + P     VSG+LVK+ F Y I+A ++L  ++ ++ +TVTQR ++ + G+F +++  + ++   +E    E+     ++    + +  E ++ ++L+W + P++DM +D++++ +L   S E P+ +
Sbjct:    7 SLKRREQP-------ISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEF---PDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGDTVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHERVTVKQESEKHISLQWSSDPISDMVSDSIVALILNI-SREVPKIV 605

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|74860395|sp|Q86A79.1|CPSF3_DICDI (RecName: Full=Cleavage and polyadenylation specificity factor subunit 3; Short=Cleavage and polyadenylation specificity factor 3)

HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0
Identity = 316/596 (53.02%), Postives = 443/596 (74.33%), Query Frame = 0

Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEAD--KIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQ-MLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQES-------KKIIRAFGAIDIVHEKRM-VTLEWIASPVNDMYADAVLSAVLQAE 602
            +++ D + I P+G+G EVGRSC +L++K K+V+ DCG+HP  +G+ +LPF D IE+D   IDLLL+SHFHLDHA A+P+F+ KT FKG+ FMTH TKAIY  LLSD++KVSNI  +  ML+ + DL+ S+EKI+ + + ++ E NGIK   +NAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLM AE P ++ DVLI+E+TYG  +HE R +RE RFTS++H++V R G+CLIPVFALGRAQELLLILDEYW A+P+LH +PIYYAS+LAKKCM VY+T++N MND++R Q  VSNPF FKHI N+KGI+ FDD GPCV +ASPGM+QSGLSR+LFE WC+D +NG ++ GY VEGTLAKHI+SEP EIT ++   +PL L VSY+SFSAH+D+ QTS FI+ ++PPHV+LVHG+ANEMSRL+ +L+ +++      I+   P+N ++V L FR EK+AK +G++    P  +  + G+LV ++F +HIL+A+D+  YT++  + + Q+ ++ +  ++ +   L+S L    E +    ES       K  I  +  I +++   + + LEW ++ VNDM  D++++ + Q E
Sbjct:   30 TEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVSNPFEFKHIKNIKGIESFDDRGPCVFMASPGMLQSGLSRQLFERWCSDKRNGIVIPGYSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQTSEFIQEIQPPHVVLVHGDANEMSRLRQSLVAKFKT-----INVLTPKNAMSVALEFRPEKVAKTLGSIITNPPKQNDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQKLTLPFAQTYHI---LISTLEQIYEQIIESTESTGGGGNEKPTITIYNEIKLIYNIGVSIILEWNSNTVNDMICDSIIALISQIE 617

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|74703664|sp|Q4PEJ3.1|YSH1_USTMA (RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA 3'-end-processing protein YSH1)

HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 303/604 (50.17%), Postives = 435/604 (72.02%), Query Frame = 0

Query:   22 DKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFK---GKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEV-NGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQI-AVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDL-ELVDTEQESKKIIRAFGAIDIVHEKRM-VTLEWIASPVNDMYADAVLSAVLQAESIEKPRYIPTNAKVDM 618
            D++TI  LGAGQEVGRSC +L+++ K ++ D G+HP   G+ ALPF+D ++   +D +LI+HFHLDHA AL + ++KT F+   GK +MTH TKA+YR+L+SDF+++SN   +  L+ E ++  S  +I+ ++FH++  +  G++F +Y+AGHVLGA MF+IEIAG+R+LYTGDFSREEDRHL+ AE+P ++PDVLI E+TYGT  HE R D+EHRFTS IH I+ RGGR L+PVF LGRAQELLL+LDEYWAAHPELH +PIYYAS+LAKKC++VYQT+++ MND IR +     NPFVFKHISNL+ ++ F+D GPCV++ASPG MQSG+SREL E W  D +NG IV+GY VEGT+A++IL+EP+EI  +NGQ++P ++ V YISFSAH D+ Q S FI  +K  H++LVHGE N MS+L++AL   + A   +++  + PRN   + L FR ++ AK +G +A + P     V G+L+ ++F Y IL   DL  +T ++ ST+ QRQ V    S++++++ +  + G L E VD E E  + +R  GA+D+    R  + +EW++S  NDM AD++++ +L  +S       P++ K+ M
Sbjct:   22 DQLTIEMLGAGQEVGRSCCVLKYRGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDENEMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREEDRHLVQAEIPPVKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHIRTRFNRRDNPFVFKHISNLRSLEKFEDRGPCVMMASPGFMQSGVSRELLERWAPDKRNGLIVSGYSVEGTMARNILNEPDEIIGINGQKIPRRMSVDYISFSAHVDFAQNSRFIDEIKAQHIVLVHGEQNNMSKLRAALQARFTAR-GSDVKIHTPRNCEPLVLQFRAQRTAKAIGTIAAKPPAQGDIVDGLLISKDFAYTILDPKDLTDFTGLSTSTIVQRQRVALAVSWEMVRWHLQGMYGRLQEGVDAE-EGLRTLRIMGAVDVRQSARHELLVEWVSSIANDMVADSIVALLLGIDS------APSSVKMTM 617

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|384872669|sp|O13794.2|YSH1_SCHPO (RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA 3'-end-processing protein ysh1)

HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0
Identity = 306/696 (43.97%), Postives = 452/696 (64.94%), Query Frame = 0

Query:   14 ESTSSDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTE--QESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEKPRYIP-TNAKVDMMHFK--------------ECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSLMLDE 692
            E    D  D +    LGAG EVGRSCH++++K K V+LD G+HP   G+ ALPF D  +   +D+LLISHFHLDH  +LP+ +QKT F+G+ FMTH TKA+ +WLLSD++KVSN+  E  LY E+DL  + ++I+ +++H   EV GIKF  Y+AGHVLGA M+ +E+AGV +L+TGD+SREEDRHL  AE+P  RPDVLI E+TYGT  H+ R ++E R  + IH  +  GGR L+PVFALGRAQELLLILDEYW  H +L  +PIYYASSLA+KCMA++QT+VN MND IR+  A  NPF+F+ + +L+ ++ FDDIGP VILASPGM+Q+G+SR L E W  D +N  ++ GY VEGT+AK I +EP EI +++GQ++P ++ V  +SF+AH DY Q S FI  +   H+ILVHGE   M RLKSAL  ++  +   ++  Y PRN V + L F+GE++ + +G +A+ KP +   +SG+L++++ NY +++A DL+ ++D+T + +TQ+Q + +  S +L  F + Q+ G ++   T+  Q    ++ A   + ++ E ++  LEW+ + +ND  AD+V++ +L  ES   P  +  T+ K + +H                + L+  L + FG ES+  T  G   EI  E  +A ID  ++ V+C  + +   ++      +   L   E
Sbjct:    9 EDAPVDPSDLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDLSTVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQLYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIFAERNPFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLTGYSVEGTMAKQITNEPIEIVSLSGQKIPRRMAVEELSFAAHVDYLQNSEFIDLVNADHIILVHGEQTNMGRLKSALASKFH-NRKVDVKVYTPRNCVPLYLPFKGERLVRALGKVAVHKPKEGDIMSGILIQKDANYKLMSAEDLRDFSDLTTTVLTQKQVIPFFSSMELANFHLKQMFGYVKQSKTKAGQPQYTVMDAI-TLTLIQEHKL-ALEWVGNIMNDTIADSVITILLGIES--SPASVKLTSHKCNHLHSHLDKPPKVSKEEDRIKKLMMFLDNQFG-ESMTKTEKG--VEIKFEKYEASIDFSTMKVECSNEALRSRVVHVLSRAINTILPFSE 696

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|223634672|sp|Q6C2Z7.2|YSH1_YARLI (RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA 3'-end-processing protein YSH1)

HSP 1 Score: 620.542 bits (1599), Expect = 0.000e+0
Identity = 289/546 (52.93%), Postives = 399/546 (73.08%), Query Frame = 0

Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIA-TEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQI--AVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEI-TAMNGQ-RLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNID--FYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQ 556
            +D+ D  +   LG G+EVGRSCH++ FK K ++LD G+HP  +G+ +LPF D  +   ID+LLISHFHLDHA +LP+ +QKT FKG+ FMTH TK IYRWLLSDF++V++ A ++  LYSE DL  S  KI+T+++H   EVNG+KF AY+AGHVLGAAM+ IE+ GV+VL+TGD+SREEDRHL  AE+P ++PD+LI E+TYGT  H  R +RE R T  IH  +++GG+CL+PVFALGRAQE+LLILDEYW AHP+L E  IYYAS+LAKKC+AVYQT++N MND IRR+     +NPF FK+I N+K +D FDD+GPCV++ASPGM+QSG+SR L E W  D KN  I+ GY VEGT+AK I++EP EI +A N   ++P +L V  +SF+AH D++Q S FI  +   ++ILVHGE N M RLK+AL+ +Y    ++  +   YNPRN   V+L F+G K+AK VG +A EKP     +SGV+V+++FNY ++   DL+++  ++ S+V +RQ+V       L+++ + Q+ G +E+ +TE 
Sbjct:   31 TDDSDTFSFVALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLSTIDILLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEADLTASFNKIETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSREEDRHLNQAEVPPMKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFALGRAQEILLILDEYWEAHPDLQEFSIYYASALAKKCIAVYQTYINMMNDNIRRRFRDQKTNPFRFKYIKNIKNLDRFDDMGPCVMVASPGMLQSGVSRSLLERWAPDPKNTLILTGYSVEGTMAKQIINEPNEIPSAQNPDLKVPRRLAVEELSFAAHVDFQQNSEFIDLVDSKNIILVHGELNNMQRLKAALLAKYRGLKNSPREKTIYNPRNCEEVELAFKGVKVAKTVGKMAEEKPHVGQIISGVVVQKDFNYGLMGVADLREHVGLSTSSVLERQTVTVNAGVDLVKYHLEQMFGYVEMRETEN 576

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|442570103|sp|Q74ZC0.2|YSH1_ASHGO (RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA 3'-end-processing protein YSH1)

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 297/651 (45.62%), Postives = 436/651 (66.97%), Query Frame = 0

Query:   29 LGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIA-------TEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPEL---HEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQI--AVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQ--RLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDT--NIDFYNPRNTVAVDLYFRGEKMAKVVGNLA----------MEKPIDD--------------------------------HRVSGVLV--KRNFNYHILAANDLQK-YTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLE-LVDTE-------QESKK-------IIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAES 603
            LG   EVGRSCHIL++K K V+LD G+HP   G+ +LPF D  +  ++++LLISHFHLDHA +LP+ +Q+T F+G+ FMTH TKAIYRWLLSDF+KV+NI        +++ LY+++DL  S ++I+T+++H   +VNGIKF AY+AGHVLGAAMF +EIAG+R+L+TGD+SRE DRHL +AE+PTL  D+LIVE+T+GT  HE R  +E + T  IH  V++GGR L+PVFALGRAQE++LILDEYW+ H E     ++PI+YAS+LA+KCM+V+QT+VN MNDKIR++   + +NPF+FK+IS LK +D F D GP V+LASPGM+Q+GLSR+L E WC D KN  ++ GY VEGT+AK ++ EPE I ++N     +P + QV  ISF+AH D+++   F+  +  P++ILVHGE+N M RLKSAL+  + +   T   +  YNPRN VAVDL F+G K+AK VGN+            E+P +D                                  +SG+LV  ++NF+ ++++ +DL++ +TD++ + + +RQ+V+ +   +L+ + + Q+ GD+E LVD E       +E +K       ++R  G I +     + TLEW  + ++D  AD++++ +L  +S
Sbjct:   16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLSQVEVLLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYTDEDLAESFDRIETVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKGGRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYVNMMNDKIRKKFRDSQTNPFIFKNISYLKNLDEFQDFGPSVMLASPGMLQNGLSRDLLEKWCPDEKNLVLITGYSVEGTMAKFLMLEPETIPSINNSDVSIPRRCQVEEISFAAHVDFRENLEFVEKIGAPNIILVHGESNPMGRLKSALLSNFSSLKGTEDEVRVYNPRNCVAVDLEFKGVKIAKAVGNIVDEMLPVVDEDKERPYNDPEDATSEEQPKEEPQDADKLPEEREQPEVEEERVISGILVSDEKNFDLNLVSLSDLREHHTDLSTTVLKERQTVHVDCRNELIFWHLCQMFGDIEVLVDEEGATLTKVEEDEKNTKPGQLVVRVMGDIKLSVVDHVATLEWTQNVISDAVADSIVAILLSVDS 666

[Close]

BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Match: gi|987921609|ref|XP_015436983.1| (PREDICTED: cleavage and polyadenylation specificity factor 73 [Dufourea novaeangliae] >gi|1016171138|gb|KZC14174.1| Cleavage and polyadenylation specificity factor subunit 3 [Dufourea novaeangliae])

HSP 1 Score: 1083.94 bits (2802), Expect = 0.000e+0
Identity = 499/672 (74.26%), Postives = 591/672 (87.95%), Query Frame = 0

Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEK-PRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSL 688
            ++E D ++IRPLGAGQEVGRSC +LEFK K+++LDCGIHPGL+GMDALPFVD++EAD+IDLLLISHFHLDH GALPWFLQKT+FKG+CFMTHATKAIYRWLLSD+IKVSNIATEQMLY+E DLETSM+KI+T+NFHEEK+V GIKFWAYNAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P + PDVLI E+TYGTHIHEKREDRE RFT+ +HEIVNRGGRCLIPVFALGRAQELLLILDEYW+ HPELHEIPIYYASSLAKKCMAVYQT+VNAMNDKIRRQIA++NPFVFKHISNLKGIDHF+DIGPCV++ASPGMMQSGLSRELFESWCTD+KNG I+AGYCVEGTLAK ILSEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIR LKPPHV+LVHGE NEM RLK+AL REYE DP+T ++ +NPRNTVAV+LYFRGEK AKV+G LAME P     +SGVLVKRNFNYH+LA  DL KYTDM++S V QRQSVY+  S  +L+ L++Q++G+LE+VD      K +R F  +D+  + ++ T+EWIA+PVNDMYAD+VL+A+LQAE +++ P+ +P   K+D MHFKECL+EMLQ+MFGE+SVP  F G++  +TV+ KKAHID+ +L+V   ED+  Q I+QTA +KL  SL
Sbjct:   13 AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPHVVLVHGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPKPGQTLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLPVLKHLLTQIAGNLEVVD-----DKKLRVFKNVDVTIDGKIATMEWIATPVNDMYADSVLTAILQAEMMDQPPKVLPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLEVTSKEDETFQQIVQTAVTKLHQSL 679

[Close]

BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Match: gi|751229559|ref|XP_011168248.1| (PREDICTED: cleavage and polyadenylation specificity factor 73 [Solenopsis invicta] >gi|322786053|gb|EFZ12664.1| hypothetical protein SINV_01905, partial [Solenopsis invicta])

HSP 1 Score: 1083.55 bits (2801), Expect = 0.000e+0
Identity = 499/672 (74.26%), Postives = 590/672 (87.80%), Query Frame = 0

Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEK-PRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSL 688
            ++E D ++IRPLGAGQEVGRSC +LEFK K+++LDCGIHPGL+GMDALPFVD++EAD+IDLLLISHFHLDH GALPWFLQKT+FKG+CFMTHATKAIYRWLLSD+IKVSNIATEQMLY+E DLETSM+KI+T+NFHEEK+V GIKFWAYNAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P + PDVLI E+TYGTHIHEKREDRE RFT+ +HEIVNRGGRCLIPVFALGRAQELLLILDEYW+ H ELHEIPIYYASSLAKKCMAVYQT+VNAMNDKIRRQIA++NPFVFKHISNLKGIDHF+DIGPCV++ASPGMMQSGLSRELFESWCTD+KNG I+AGYCVEGTLAK ILSEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIR LKPPHV+LVHGE NEM RLK+AL REYE DP T ++ +NPRNTVAV+LYFRGEK AKV+G LAME P    ++SGVLVKRNFNYH+LA  DL KYTDM++S V QRQSVY+  S  +L+ L++Q++G LE+VD      K +R F  +D+  + ++VT+EW+A+PVNDMYAD+VL+A+LQAE +E+ P+ +P   K+D MHFKECL+EMLQ+MFGE+SVP  F G++  +TV+ KKAHID+ +L+V   ED+  Q I+QTA +KL  SL
Sbjct:   13 AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPPHVVLVHGEQNEMGRLKAALQREYEDDPSTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPRPGQKLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLPVLKHLLTQIAGSLEVVD-----DKKLRVFKNVDVTIDGKIVTMEWVATPVNDMYADSVLTAILQAEIMEQSPKVLPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLEVTSKEDETFQQIVQTAVTKLHQSL 679

[Close]

BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Match: gi|1080066061|ref|XP_018575214.1| (cleavage and polyadenylation specificity factor 73 [Anoplophora glabripennis])

HSP 1 Score: 1083.17 bits (2800), Expect = 0.000e+0
Identity = 496/672 (73.81%), Postives = 596/672 (88.69%), Query Frame = 0

Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEKP-RYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSL 688
            ++E D++ I PLGAGQEVGRSC ++EFK K+++LDCGIHPGL+GMDALPFVD+IEAD+IDLLLISHFHLDH GALPWFLQKT+FKG+CFMTHATKAIYRWLLSD+IKVSNIATEQMLY+E DLE SM+KI+T+NFHEEK+V GIKFWAYNAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+PT+ PDVLI E+TYGTHIHEKREDRE RFT+ +H+IVNRGGRCLIPVFALGRAQELLLILDEYW+ HPELH+IPIYYASSLAKKCMAVYQT++NAMNDKIRRQIA++NPFVFKHISNLKGIDHF+DIGPCV++ASPGMMQSGLSRELFESWCTD+KNG I+AGYCVEGTLAK ILSEPEEIT M GQ+LPLK+ V YISFSAHTDY+QTS FIR LKPPHV+LVHGE NEM+RLK+AL REYE DP+T I  +NPRNT AV+LYFRGEK AKV+GNLA+++P     +SG+LVKRNFNYHIL+A+DL KYTD+++S + QRQS++Y G+   L++L+SQ++G LE +DT+++    +RAF AIDI  + ++VTLEW+A+PVNDMYADA+++A+LQA+ +E P + + T+ KVD MHFKECL+EMLQDMFGE+SVP  F G++  +TV  K+A ID+ +L+VKCP D+  Q I+ TA +KL  SL
Sbjct:   13 AEESDQLIIMPLGAGQEVGRSCIMIEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTEADLEASMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPTVHPDVLITESTYGTHIHEKREDRESRFTNLVHDIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELHDIPIYYASSLAKKCMAVYQTYINAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEPEEITTMVGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPHVVLVHGEQNEMNRLKAALQREYEDDPNTTIHLHNPRNTHAVELYFRGEKTAKVMGNLAIDEPKPGRTLSGILVKRNFNYHILSADDLSKYTDLSMSQIMQRQSIHYSGNMGALRYLISQVAGLLESIDTDKK----MRAFNAIDITLDHKIVTLEWVANPVNDMYADAIVAAILQADLLEVPIKNMSTSVKVDRMHFKECLIEMLQDMFGEDSVPKIFKGEKLYVTVNDKRADIDLSNLEVKCPSDETFQQIVHTAVTKLYQSL 680

[Close]

BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Match: gi|1068410897|ref|XP_018051823.1| (PREDICTED: uncharacterized protein LOC108689541 [Atta colombica])

HSP 1 Score: 1083.17 bits (2800), Expect = 0.000e+0
Identity = 496/672 (73.81%), Postives = 589/672 (87.65%), Query Frame = 0

Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEK-PRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSL 688
            ++E D ++IRPLGAGQEVGRSC +LEFK K+++LDCGIHPGL+GMDALPFVD++EAD+IDLLLISHFHLDH GALPWFL KT+FKG+CFMTHATKAIYRWLLSD+IKVSNIATEQMLY+E DLETSM+KI+T+NFHEEK++ GIKFWAYNAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P + PDVLI E+TYGTHIHEKREDRE RFT+ +HEIVNRGGRCLIPVFALGRAQELLLILDEYW+ H ELHEIPIYYASSLAKKCMAVYQT+VNAMNDKIRRQIA++NPFVFKHISNLKGIDHF+DIGPCV++ASPGMMQSGLSRELFESWCTD+KNG I+AGYCVEGTLAK ILSEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIR LKPPHV+LVHGE NEM RLK+AL REYE DP+T ++ +NPRNTVAV+LYFRGEK AKV+G LAME P     +SGVLVKRNFNYH+LA  DL KYTDM++S V QRQSVY+  S  +L+ L++Q++G LE+VD      K +R F  +D+  + +++T+EWIA+PVNDMYAD+VL+A+LQAE +++ P+ +P   K+D MHFKECL+EMLQ+MFGE+SVP  F G++  +TV+ KKAHID+ +LDV   +D+  Q I+QTA +KL  SL
Sbjct: 1137 AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLLKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETINFHEEKDMFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPPHVVLVHGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPRPGQTLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLPVLKHLLTQIAGHLEVVD-----DKKLRIFKNVDVTIDGKIITMEWIATPVNDMYADSVLTAILQAEIMDQSPKVLPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLDVTS-KDETFQQIVQTAVTKLHQSL 1802

[Close]

BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Match: gi|749784937|ref|XP_011146254.1| (PREDICTED: cleavage and polyadenylation specificity factor 73 [Harpegnathos saltator] >gi|307199387|gb|EFN80012.1| Cleavage and polyadenylation specificity factor subunit 3 [Harpegnathos saltator])

HSP 1 Score: 1083.17 bits (2800), Expect = 0.000e+0
Identity = 499/672 (74.26%), Postives = 591/672 (87.95%), Query Frame = 0

Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEK-PRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSL 688
            ++E D ++IRPLGAGQEVGRSC +LEFK KR++LDCGIHPGL+GMDALPFVD++EAD+IDLLLISHFHLDH GALPWFLQKT+FKG+CFMTHATKAIYRWLLSD+IKVSNIATEQMLY+E DLETSM+KI+T+NFHEEK+V GIKFWAYNAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P + PDVLI E+TYGTHIHEKREDRE RFT+ +HEIVNRGGRCLIPVFALGRAQELLLILDEYW  H ELHEIPIYYASSLAKKCMAVYQT+VNAMNDKIRRQIA++NPFVFKHISNLKGIDHF+DIGPCV++ASPGMMQSGLSRELFESWCTD+KNG I+AGYCVEGTLAK ILSEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIR LKPPHV+LVHGE NEM RLK+AL REYE DP+T ++ +NPRNTVAV+LYFRGEK AKV+G LAME P    ++SGVLVKRNFNYH+LA  DL KYTDM++S V QRQSVY+  S  +L+ L++Q++G+LE++D      K +R F  +D+  + ++VT+EWIA+PVNDMYAD+VL+A+LQAE +++ P+ +P   K+D MHFKECL+EMLQ+MFGE+SVP  F G++  +TV+ KKAHID+ +L+V   ED+  Q I+QTA +KL  SL
Sbjct:   12 AEESDLLSIRPLGAGQEVGRSCIMLEFKGKRIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWGQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKGILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPHVVLVHGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPKPGQKLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLPVLKHLLTQIAGNLEVID-----DKKLRVFKNVDVTIDGKIVTMEWIATPVNDMYADSVLTAILQAEIMDQSPKMLPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLEVTSKEDETFQQIVQTAVTKLHQSL 678

The following BLAST results are available for this feature:

BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr

BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 4


Match Name	E-value	Identity	Description
EMLSAG00000007282	0.000e+0	80.39	supercontig:LSalAtl2s:LSalAtl2s409:129273:131364:-...	[more]
EMLSAG00000000010	2.430e-105	34.78	supercontig:LSalAtl2s:LSalAtl2s1003:5798:7615:-1 g...	[more]
EMLSAG00000011843	4.177e-35	27.60	supercontig:LSalAtl2s:LSalAtl2s831:281816:286361:1...	[more]
EMLSAG00000011315	2.971e-15	19.79	supercontig:LSalAtl2s:LSalAtl2s77:664263:677061:-1...	[more]

BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|74947821\|sp\|Q9VE51.2\|CPSF3_DROME	0.000e+0	67.16	RecName: Full=Cleavage and polyadenylation specifi...	[more]
gi\|18202362\|sp\|P79101.1\|CPSF3_BOVIN	0.000e+0	66.22	RecName: Full=Cleavage and polyadenylation specifi...	[more]
gi\|341940395\|sp\|Q9QXK7.2\|CPSF3_MOUSE	0.000e+0	65.93	RecName: Full=Cleavage and polyadenylation specifi...	[more]
gi\|18203503\|sp\|Q9UKF6.1\|CPSF3_HUMAN	0.000e+0	65.93	RecName: Full=Cleavage and polyadenylation specifi...	[more]
gi\|75262219\|sp\|Q9C952.1\|CPSF3_ARATH	0.000e+0	53.93	RecName: Full=Cleavage and polyadenylation specifi...	[more]
gi\|74860395\|sp\|Q86A79.1\|CPSF3_DICDI	0.000e+0	53.02	RecName: Full=Cleavage and polyadenylation specifi...	[more]
gi\|74703664\|sp\|Q4PEJ3.1\|YSH1_USTMA	0.000e+0	50.17	RecName: Full=Endoribonuclease YSH1; AltName: Full...	[more]
gi\|384872669\|sp\|O13794.2\|YSH1_SCHPO	0.000e+0	43.97	RecName: Full=Endoribonuclease ysh1; AltName: Full...	[more]
gi\|223634672\|sp\|Q6C2Z7.2\|YSH1_YARLI	0.000e+0	52.93	RecName: Full=Endoribonuclease YSH1; AltName: Full...	[more]
gi\|442570103\|sp\|Q74ZC0.2\|YSH1_ASHGO	0.000e+0	45.62	RecName: Full=Endoribonuclease YSH1; AltName: Full...	[more]

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|987921609\|ref\|XP_015436983.1\|	0.000e+0	74.26	PREDICTED: cleavage and polyadenylation specificit...	[more]
gi\|751229559\|ref\|XP_011168248.1\|	0.000e+0	74.26	PREDICTED: cleavage and polyadenylation specificit...	[more]
gi\|1080066061\|ref\|XP_018575214.1\|	0.000e+0	73.81	cleavage and polyadenylation specificity factor 73...	[more]
gi\|1068410897\|ref\|XP_018051823.1\|	0.000e+0	73.81	PREDICTED: uncharacterized protein LOC108689541 [A...	[more]
gi\|749784937\|ref\|XP_011146254.1\|	0.000e+0	74.26	PREDICTED: cleavage and polyadenylation specificit...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold495_size155559	supercontig	scaffold495_size155559:23744..25822 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold495_size155559-processed-gene-0.4-mRNA-1	snap_masked-scaffold495_size155559-processed-gene-0.4-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold495_size155559:23744..25822+

gene from alignment at scaffold495_size155559:23744..25822+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold495_size155559-processed-gene-0.4 ID=snap_masked-scaffold495_size155559-processed-gene-0.4|Name=cleavage and polyadenylation specificity factor subunit 3|organism=Tigriopus kingsejongensis|type=gene|length=2079bp|location=Sequence derived from alignment at scaffold495_size155559:23744..25822+ (Tigriopus kingsejongensis)
ATGGCCCTCAAGCGGGCCCACTCCCCGGGCTTCATCGTGGAGAGCACCTC
GAGCGATGAGCAGGACAAGATGACGATCCGCCCCCTGGGGGCGGGTCAGG
AGGTGGGCCGCTCCTGTCACATCCTCGAGTTCAAGGACAAGCGCGTTCTC
CTGGACTGCGGCATCCACCCGGGCCTCAACGGCATGGATGCCCTGCCCTT
CGTGGACATGATCGAGGCCGACAAGATCGACCTGCTGCTCATCTCGCATT
TCCATCTGGATCACGCCGGAGCCTTGCCCTGGTTCCTCCAGAAGACCACG
TTCAAGGGCAAGTGCTTCATGACGCACGCCACCAAGGCCATCTACCGCTG
GCTCCTCTCGGACTTCATCAAGGTGTCCAACATCGCCACGGAGCAGATGC
TCTACTCGGAGCAGGACCTGGAGACCAGCATGGAGAAGATCGACACGCTC
AACTTCCACGAGGAGAAGGAGGTGAACGGCATCAAGTTCTGGGCCTACAA
CGCCGGCCACGTCCTCGGCGCGGCCATGTTCATGATCGAAATCGCGGGCG
TGCGCGTGCTGTACACCGGCGACTTCTCCCGCGAGGAGGATCGCCATCTC
ATGGCCGCGGAGCTGCCCACCCTCAGGCCGGACGTGCTCATCGTGGAGGC
CACCTACGGCACGCACATCCACGAGAAGCGCGAGGATCGCGAGCACCGCT
TCACGTCCACCATCCACGAGATCGTGAACCGGGGCGGGCGCTGCCTCATA
CCGGTGTTCGCCCTGGGTCGGGCCCAGGAGCTGCTGCTCATCTTGGACGA
GTACTGGGCCGCGCATCCGGAGCTGCACGAGATCCCCATCTACTACGCCT
CCTCCCTGGCCAAGAAGTGCATGGCCGTCTACCAGACCTTCGTGAACGCC
ATGAACGACAAGATTCGACGCCAGATCGCCGTGAGCAACCCGTTCGTCTT
CAAGCACATCTCCAATCTCAAGGGCATCGACCACTTTGACGACATCGGCC
CCTGCGTGATCCTGGCCTCGCCGGGCATGATGCAGAGCGGTCTTTCGCGG
GAGCTCTTCGAGAGCTGGTGCACGGACTCCAAGAATGGCTGCATCGTGGC
CGGCTACTGCGTGGAGGGCACCCTGGCCAAGCATATCCTCTCCGAGCCCG
AGGAGATCACGGCCATGAACGGACAGAGGCTGCCGCTCAAGCTCCAAGTG
AGCTACATCTCGTTCTCGGCCCACACCGACTACAAGCAGACCAGTGGATT
CATCCGGGCTCTCAAGCCGCCCCACGTGATCCTCGTCCACGGCGAGGCCA
ACGAGATGAGCCGGCTCAAGTCGGCCTTGATCCGCGAGTACGAGGCGGAT
CCGGACACCAATATTGACTTCTACAATCCTCGCAACACCGTGGCCGTCGA
CCTCTACTTCCGCGGCGAGAAGATGGCCAAGGTGGTGGGCAATCTGGCCA
TGGAGAAGCCCATCGACGACCACCGGGTGTCGGGCGTGCTGGTCAAGCGC
AACTTCAACTACCATATCCTGGCCGCCAACGACCTCCAGAAGTACACGGA
TATGACGATCTCGACTGTGACGCAGCGACAGTCGGTCTACTACGAGGGCA
GCTTTCAGCTCCTCCAGTTCCTCGTGTCCCAACTCTCCGGCGACCTGGAG
CTGGTAGACACGGAGCAGGAGAGCAAGAAGATCATCCGGGCCTTCGGCGC
CATCGACATCGTGCACGAGAAGCGCATGGTCACCTTGGAGTGGATCGCCA
GTCCGGTCAACGATATGTACGCGGATGCCGTGCTTTCGGCCGTTCTCCAG
GCCGAGTCGATCGAGAAGCCCCGCTACATCCCCACCAACGCCAAGGTGGA
CATGATGCATTTCAAGGAGTGCCTCTTGGAAATGCTCCAAGACATGTTTG
GCGAGGAATCCGTGCCCACCACCTTCAGTGGAGATCGCTTCGAGATCACG
GTCGAGTCCAAGAAGGCCCACATCGACATCGGCAGTCTGGACGTGAAATG
CCCCGAGGACGACATGCTCCAGAACATCATTCAAACGGCGTGCTCCAAAC
TCAAGCTCTCGCTAATGTTGGATGAGTGA

Synonyms

The feature 'cleavage and polyadenylation specificity factor subunit 3' has the following synonyms


Synonym
Tk09235

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