cleavage and polyadenylation specificity factor subunit 3, snap_masked-scaffold495_size155559-processed-gene-0.4 (gene) Tigriopus kingsejongensis

Overview
Namecleavage and polyadenylation specificity factor subunit 3
Unique Namesnap_masked-scaffold495_size155559-processed-gene-0.4
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
Match: EMLSAG00000007282 (supercontig:LSalAtl2s:LSalAtl2s409:129273:131364:-1 gene:EMLSAG00000007282 transcript:EMLSAT00000007282 description:"maker-LSalAtl2s409-augustus-gene-1.22")

HSP 1 Score: 1170.61 bits (3027), Expect = 0.000e+0
Identity = 541/673 (80.39%), Postives = 613/673 (91.08%), Query Frame = 0 
Query:   17 SSDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEKPRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSLM 689
            + ++ D+M  RPLGAGQEVGRSCH+LEFKDKR+LLDCGIHPGL+GMDALPFVD+IEAD+IDLLL+SHFHLDHAGALPWFL+KTTFKGK FMTHATKAIYRWLLSD+IKVSNI+TEQMLYSEQDLE SMEKI TLNFHEEKEV GI+FWAYNAGHVLGA MFMIEIAGVR LYTGDFSREEDRHLMA E P+L+P VLI+E+TYGT+IHEKREDRE RFTST+H+IV RGGRCLIPVFALGRAQELLLILDEYW AHPELHEIPIYYASSLAKKCMAVYQTFVNAMN++IRRQI+V+NPFVFKHISNLKGIDHFDD+GPCVILASPGMMQSGLSRELFESWC+D KNGCIVAGYCVEGTLAKHILSEPEE+ +MNGQ+LPLK+QV+YISFSAHTDYKQTSGFIR LKPPHVILVHGEANEMSRLKSALIREYEADP T IDFYNPRNTV+VDL+FRGEKMAKV+G+LA++ PI +HRVSG+LVKRNFNYHIL+ +DL KYTDMT S VTQRQS+YY GSFQLLQF++SQ   D+     +++ KK IR F +ID++HE +M+TLEWIASPVNDMYADAVLSA+LQAES++ P+YIP NA+VD MHFKEC +E+LQDMFGEESVP TFSGD+F + V +KKA ID+ +L+V C ED+    I++TA +KL  SL+
Sbjct:    4 NGEDSDRMVFRPLGAGQEVGRSCHLLEFKDKRILLDCGIHPGLSGMDALPFVDLIEADEIDLLLVSHFHLDHAGALPWFLEKTTFKGKVFMTHATKAIYRWLLSDYIKVSNISTEQMLYSEQDLEASMEKIQTLNFHEEKEVKGIRFWAYNAGHVLGAXMFMIEIAGVRTLYTGDFSREEDRHLMAXEXPSLKPHVLILESTYGTNIHEKREDRESRFTSTVHDIVTRGGRCLIPVFALGRAQELLLILDEYWGAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNERIRRQISVNNPFVFKHISNLKGIDHFDDVGPCVILASPGMMQSGLSRELFESWCSDPKNGCIVAGYCVEGTLAKHILSEPEEVASMNGQKLPLKMQVNYISFSAHTDYKQTSGFIRELKPPHVILVHGEANEMSRLKSALIREYEADPSTKIDFYNPRNTVSVDLFFRGEKMAKVMGSLAVDPPIQEHRVSGILVKRNFNYHILSPSDLPKYTDMTTSVVTQRQSIYYSGSFQLLQFMISQFGCDVTTPKEKEKKKKYIRVFDSIDVIHEDKMITLEWIASPVNDMYADAVLSAILQAESLDTPQYIPANARVDKMHFKECCIELLQDMFGEESVPKTFSGDKFGVIVHNKKALIDLKTLEVSCNEDETFGKIVETAITKLHESLV 676
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
Match: EMLSAG00000000010 (supercontig:LSalAtl2s:LSalAtl2s1003:5798:7615:-1 gene:EMLSAG00000000010 transcript:EMLSAT00000000010 description:"augustus_masked-LSalAtl2s1003-processed-gene-0.0")

HSP 1 Score: 332.413 bits (851), Expect = 2.430e-105
Identity = 192/552 (34.78%), Postives = 300/552 (54.35%), Query Frame = 0 
Query:   22 DKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIE-------ADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVS-NIATEQMLYSEQDLETSMEKIDTLNFHEEKEVN-GIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRN----TVAVDLYFRGEKMAKVVGNLAME---KPIDDHR---VSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQ-----LLQFLVSQLSGDL 549
            +++ + PLGAGQ+VGRSC ++    K ++LDCG+H G N     P    IE          +D ++ISHFHLDH GALP+  +   + G  +MTH TKAI   LL D  +V+     E   ++   ++  M+K+  ++ H+   V+  ++  AY AGHVLGAAMF +++    ++YTGD++   DRHL AA +   RPD+LI E+TY T + + +  RE  F   +H+ V RGG+ LIPVFALGRAQEL ++L+ YW       ++PI++++ L +K    Y+ F+   N+KIR+     N F FK I  L    +  + GP V+ A+PGM+  GLS  +FE WCT+  N  I+ GYCV GT+   IL+   ++    G+ + +K+ V Y+SFSAH D K     I   +P +V+LVHGE  +M  LK+ +  E+       +  + P N    T++  +   G   + ++    ++   KP D  R   + GV+V ++    IL    + +   +   T+    +V +    Q     + Q L + +S DL
Sbjct:    3 EEIRVTPLGAGQDVGRSCLLVSIGGKNLMLDCGMHMGYNDERRFPDFSFIEDTPGAPLTPHLDAVIISHFHLDHCGALPYMTEMVGYSGPIYMTHPTKAIAPILLEDMRRVAVERKGESNFFTSAMIKECMKKVVAVHLHQVIRVDESLEIKAYYAGHVLGAAMFQVKVGNRSIVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTVRDSKRCRERDFLKKVHDCVERGGKVLIPVFALGRAQELCILLETYWDRMN--LKVPIFFSTGLTEKATNYYKMFITWTNEKIRKTFVERNMFDFKFIKPLDRA-YIQNPGPMVVFATPGMLHGGLSLAIFEEWCTNELNMIIMPGYCVAGTVGHKILNGTRKLEFSKGKTVEVKMSVQYMSFSAHADAKGIMQLISYCEPKNVMLVHGEQAKMEFLKAKIESEH------GVQCFMPANGETATISCPITLEGCVSSSIIKKEHLKYALKPPDPKRARLLHGVIVMKDETLSILDPEKIAEEFGIQSHTIRYTLNVPFRNEVQSPLSAVAQKLYNAISRDL 545
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
Match: EMLSAG00000011843 (supercontig:LSalAtl2s:LSalAtl2s831:281816:286361:1 gene:EMLSAG00000011843 transcript:EMLSAT00000011843 description:"snap_masked-LSalAtl2s831-processed-gene-2.5")

HSP 1 Score: 140.969 bits (354), Expect = 4.177e-35
Identity = 101/366 (27.60%), Postives = 176/366 (48.09%), Query Frame = 0 
Query:   28 PLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHE----EKEVNGIKFWAYNAGHVLGAAMFMIEIAGVR-VLYTGDFSREEDRHLMAAELPTL-RPDVLIVEA-TYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPE-LHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQI--AVSNPFVFKHISNLKGIDHFDDI-GPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSE 382
            PL  G+  G  C++LE  D   LLD G  P  N         +  A KID +L+S+  LDH GALP+ + K       F T     + +  + D  +      +  L++  +++++ +KI  L +++    + +  GI      AGH++G  ++ I   G   ++Y  DF+ +++RHL   +L  L RP +LI +A   G H   +R  R+ +  + I + +   G  LI     GR  EL  ++D+ W      L    +   ++ +   +   ++ +  M++K+ +      +NPF FKH+     ++  + +  P V+LAS   M+SG SRELF  WCT+ KN  I+       TLA  ++++
Sbjct:    9 PLSGGRSEGPHCYLLEVDDYNFLLDVGWDPFFNSKLKKEIKKV--ASKIDAVLLSYPDLDHLGALPYAVGKLGLSCSIFATVPVHKMGQMFMYDVYEAQRKQEDFDLFTLDEVDSAFDKITQLKYNQTFALKGKGEGISITPIPAGHMIGGTIWKIVKDGEEDIIYAVDFNHKKERHLNGCDLDKLLRPSILITDAFNIGCH-QLRRRVRDEKIMTNILQTLRNNGNVLICTDTAGRVLELAHMVDQLWQNRDSGLLAYSLALVNNFSYSVVEFAKSQIEWMSEKLMKTFEGKRNNPFQFKHLKLCHSMNEVNKVPSPKVVLASMPDMESGYSRELFIQWCTNPKNSIILTSRSPANTLAYDLMTK 371
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
Match: EMLSAG00000011315 (supercontig:LSalAtl2s:LSalAtl2s77:664263:677061:-1 gene:EMLSAG00000011315 transcript:EMLSAT00000011315 description:"maker-LSalAtl2s77-augustus-gene-6.22")

HSP 1 Score: 78.9518 bits (193), Expect = 2.971e-15
Identity = 94/475 (19.79%), Postives = 176/475 (37.05%), Query Frame = 0 
Query:   37 RSCHILEFKDKRVLLDCGIH-------------------------PGLNGMD---------------------ALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIK------------------------------VSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNG-IKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVS-NPFVFKHISNLKGIDHFDDI----------GPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKP 423
            + C++L FK  R++LDCG+                          PG+  M+                       P   + +   ID++LIS++      ALP+  +++ FKG  +MT  T  I R  + + I+                              VSN  + + +Y+ + +E+S+ K+  + + E+K+V G +     ++G+ LG++ ++I     ++ Y    S          ++P    D LI+ +   T   +  +     F  ++ E    GG  L+P +  G   +L   L     AH  L  IP+Y+ S +A   +A        ++   + ++ +   PF    ++    +  F  +           PC++      ++ G      E W ++S N           T+     S P E      Q  PL ++V +       ++ Q    IR LKP
Sbjct:  756 KPCYVLNFKGVRIMLDCGLDLSTALHYLPIPLVHSQKLSNLGNYVPGIENMNFCEGELKDCNGKIFVDSSPEFCTPHSGLFDFADIDVILISNYTC--MLALPYVTEESGFKGIVYMTEPTLHIGRLFMEETIEYMERTALSSRHSSSGSWKDILHALPPPLCDVSNPRSWKRIYNRKQMESSLSKVQLMGYSEKKDVFGLLTVSPVSSGYCLGSSNWIISSGFEKIGYVSGTSTLTTHPRPLNQIPLRNVDCLIMTSLTQTPT-QMPDPMIGEFCKSVVETTRLGGNVLVPCYPSGITYDLFECLAGQMDAH-SLCTIPMYFVSPVADSSLAYSNIMAEWLSQSKQNKVYLPEEPFPHGGLARNGRLKSFRTMHDENFSNEYRQPCIMFCGHPSLRFGEVIHFIELWGSNSNN-----------TIVFTEPSFPYEAALAPFQ--PLHMKVIHCPIDTSLNFSQAKKLIRDLKP 1213
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|75571225|sp|Q5ZIH0.1|INT11_CHICK (RecName: Full=Integrator complex subunit 11; Short=Int11; AltName: Full=Cleavage and polyadenylation-specific factor 3-like protein; Short=CPSF3-like protein)

HSP 1 Score: 349.747 bits (896), Expect = 1.178e-110
Identity = 198/502 (39.44%), Postives = 292/502 (58.17%), Query Frame = 0 
Query:   23 KMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIE-----ADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVS-NIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNG-IKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDH--FDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYE------ADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLA-MEKPIDDHRVSGVLVKRNFNYHILA 508
            ++ + PLGAGQ+VGRSC ++    K V+LDCG+H G N     P    I       D +D ++ISHFHLDH GALP+F +   + G  +MTH TKAI   LL D+ K++ +   E   ++ Q ++  M+K+  ++ H+  +V+  ++  AY AGHVLGAAMF I++    V+YTGD++   DRHL AA +   RPD+LI E+TY T I + +  RE  F   +HE V RGG+ LIPVFALGRAQEL ++L+ +W       + PIY+++ L +K    Y+ F+   N KIR+     N F FKHI   K  D    D+ GP V+ A+PGM+ +G S ++F  W  + KN  I+ GYCV+GT+   ILS   ++     Q L +K+QV Y+SFSAH D K     IR  +P +V+LVHGEA +M  LK  + +E+       A+ +T   F NP  ++ VD+     K    +G L   +KP   H   G L+ ++ ++ +++
Sbjct:    3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL--KAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHI---KAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTTIFTNP--SIPVDISLGLLKRETAIGLLPDAKKPKLMH---GTLIMKDNSFRLVS 494
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|82192739|sp|Q503E1.1|INT11_DANRE (RecName: Full=Integrator complex subunit 11; Short=Int11; AltName: Full=Cleavage and polyadenylation-specific factor 3-like protein; Short=CPSF3-like protein)

HSP 1 Score: 345.51 bits (885), Expect = 5.841e-109
Identity = 188/468 (40.17%), Postives = 273/468 (58.33%), Query Frame = 0 
Query:   24 MTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADK-----IDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVS-NIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNG-IKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGID--HFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYE------ADPDTNIDFYNPRNTVAVDLYFRGEKMA 476
            + + PLGAGQ+VGRSC ++    K ++LDCG+H G N     P    I  +      +D ++ISHFHLDH GALP+  +   + G  +MTH TKAI   LL DF K++ +   E   ++ Q ++  M+K+  LN H+  +V+  ++  AY AGHVLGAAM  I++    V+YTGD++   DRHL AA +   RPD+LI E+TY T I + +  RE  F   +HE V RGG+ LIPVFALGRAQEL ++L+ +W       + PIY+++ L +K    Y+ F+   N KIR+     N F FKHI   K  D  + D+ GP V+ A+PGM+ +G S ++F+ W  + KN  I+ GYCV+GT+   IL+  +++       L +KLQV Y+SFSAH D K     IR  +P +++LVHGEA +M  LK  + +E+       A+ +T     NP   V + L     +MA
Sbjct:    4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL--KAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHI---KAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQGTVGHKILNGQKKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAKKMEFLKDKIEQEFSISCFMPANGETTTIVTNPSVPVDISLNLLKREMA 466
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|119371245|sp|Q3MHC2.1|INT11_RAT (RecName: Full=Integrator complex subunit 11; Short=Int11; AltName: Full=Cleavage and polyadenylation-specific factor 3-like protein; Short=CPSF3-like protein)

HSP 1 Score: 342.043 bits (876), Expect = 1.201e-107
Identity = 183/455 (40.22%), Postives = 267/455 (58.68%), Query Frame = 0 
Query:   23 KMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIE-----ADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVS-NIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNG-IKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHF--DDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDL 468
            ++ + PLGAGQ+VGRSC ++    K V+LDCG+H G N     P    I       D +D ++ISHFHLDH GALP+F +   + G  +MTH T+AI   LL D+ K++ +   E   ++ Q ++  M+K+  ++ H+  +V+  ++  AY AGHVLGAAMF I++    V+YTGD++   DRHL AA +   RP++LI E+TY T I + +  RE  F   +HE V RGG+ LIPVFALGRAQEL ++L+ +W       ++PIY+++ L +K    Y+ F+   N KIR+     N F FKHI   K  D    D+ GP V+ A+PGM+ +G S ++F  W  + KN  I+ GYCV+GT+   ILS   ++     Q L +K+QV Y+SFSAH D K     +   +P  V+LVHGEA +M  L+  + +E+       +  Y P N   V L
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHI---KAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLRQKIEQEF------RVSCYMPANGETVTL 446
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|81904239|sp|Q9CWS4.1|INT11_MOUSE (RecName: Full=Integrator complex subunit 11; Short=Int11; AltName: Full=Cleavage and polyadenylation-specific factor 3-like protein; Short=CPSF3-like protein)

HSP 1 Score: 341.658 bits (875), Expect = 1.533e-107
Identity = 183/455 (40.22%), Postives = 267/455 (58.68%), Query Frame = 0 
Query:   23 KMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIE-----ADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVS-NIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNG-IKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHF--DDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDL 468
            ++ + PLGAGQ+VGRSC ++    K V+LDCG+H G N     P    I       D +D ++ISHFHLDH GALP+F +   + G  +MTH T+AI   LL D+ K++ +   E   ++ Q ++  M+K+  ++ H+  +V+  ++  AY AGHVLGAAMF I++    V+YTGD++   DRHL AA +   RP++LI E+TY T I + +  RE  F   +HE V RGG+ LIPVFALGRAQEL ++L+ +W       ++PIY+++ L +K    Y+ F+   N KIR+     N F FKHI   K  D    D+ GP V+ A+PGM+ +G S ++F  W  + KN  I+ GYCV+GT+   ILS   ++     Q L +K+QV Y+SFSAH D K     +   +P  V+LVHGEA +M  L+  + +E+       +  Y P N   V L
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHI---KAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLRQKIEQEF------RVSCYMPANGETVTL 446
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Match: gi|118572557|sp|Q5TA45.2|INT11_HUMAN (RecName: Full=Integrator complex subunit 11; Short=Int11; AltName: Full=Cleavage and polyadenylation-specific factor 3-like protein; Short=CPSF3-like protein; AltName: Full=Protein related to CPSF subunits of 68 kDa; Short=RC-68)

HSP 1 Score: 340.887 bits (873), Expect = 3.551e-107
Identity = 184/455 (40.44%), Postives = 267/455 (58.68%), Query Frame = 0 
Query:   23 KMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIE-----ADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVS-NIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNG-IKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDH--FDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDL 468
            ++ + PLGAGQ+VGRSC ++    K V+LDCG+H G N     P    I       D +D ++ISHFHLDH GALP+F +   + G  +MTH T+AI   LL D+ K++ +   E   ++ Q ++  M+K+  ++ H+  +V+  ++  AY AGHVLGAAMF I++    V+YTGD++   DRHL AA +   RP++LI E+TY T I + +  RE  F   +HE V RGG+ LIPVFALGRAQEL ++L+ +W       ++PIY+++ L +K    Y+ F+   N KIR+     N F FKHI   K  D    D+ GP V+ A+PGM+ +G S ++F  W  + KN  I+ GYCV+GT+   ILS   ++     Q L +K+QV Y+SFSAH D K     +   +P  V+LVHGEA +M  LK  + +E        ++ Y P N   V L
Sbjct:    3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHI---KAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL------RVNCYMPANGETVTL 446
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Match: gi|987921609|ref|XP_015436983.1| (PREDICTED: cleavage and polyadenylation specificity factor 73 [Dufourea novaeangliae] >gi|1016171138|gb|KZC14174.1| Cleavage and polyadenylation specificity factor subunit 3 [Dufourea novaeangliae])

HSP 1 Score: 1083.94 bits (2802), Expect = 0.000e+0
Identity = 499/672 (74.26%), Postives = 591/672 (87.95%), Query Frame = 0 
Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEK-PRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSL 688
            ++E D ++IRPLGAGQEVGRSC +LEFK K+++LDCGIHPGL+GMDALPFVD++EAD+IDLLLISHFHLDH GALPWFLQKT+FKG+CFMTHATKAIYRWLLSD+IKVSNIATEQMLY+E DLETSM+KI+T+NFHEEK+V GIKFWAYNAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P + PDVLI E+TYGTHIHEKREDRE RFT+ +HEIVNRGGRCLIPVFALGRAQELLLILDEYW+ HPELHEIPIYYASSLAKKCMAVYQT+VNAMNDKIRRQIA++NPFVFKHISNLKGIDHF+DIGPCV++ASPGMMQSGLSRELFESWCTD+KNG I+AGYCVEGTLAK ILSEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIR LKPPHV+LVHGE NEM RLK+AL REYE DP+T ++ +NPRNTVAV+LYFRGEK AKV+G LAME P     +SGVLVKRNFNYH+LA  DL KYTDM++S V QRQSVY+  S  +L+ L++Q++G+LE+VD      K +R F  +D+  + ++ T+EWIA+PVNDMYAD+VL+A+LQAE +++ P+ +P   K+D MHFKECL+EMLQ+MFGE+SVP  F G++  +TV+ KKAHID+ +L+V   ED+  Q I+QTA +KL  SL
Sbjct:   13 AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPHVVLVHGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPKPGQTLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLPVLKHLLTQIAGNLEVVD-----DKKLRVFKNVDVTIDGKIATMEWIATPVNDMYADSVLTAILQAEMMDQPPKVLPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLEVTSKEDETFQQIVQTAVTKLHQSL 679
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Match: gi|751229559|ref|XP_011168248.1| (PREDICTED: cleavage and polyadenylation specificity factor 73 [Solenopsis invicta] >gi|322786053|gb|EFZ12664.1| hypothetical protein SINV_01905, partial [Solenopsis invicta])

HSP 1 Score: 1083.55 bits (2801), Expect = 0.000e+0
Identity = 499/672 (74.26%), Postives = 590/672 (87.80%), Query Frame = 0 
Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEK-PRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSL 688
            ++E D ++IRPLGAGQEVGRSC +LEFK K+++LDCGIHPGL+GMDALPFVD++EAD+IDLLLISHFHLDH GALPWFLQKT+FKG+CFMTHATKAIYRWLLSD+IKVSNIATEQMLY+E DLETSM+KI+T+NFHEEK+V GIKFWAYNAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P + PDVLI E+TYGTHIHEKREDRE RFT+ +HEIVNRGGRCLIPVFALGRAQELLLILDEYW+ H ELHEIPIYYASSLAKKCMAVYQT+VNAMNDKIRRQIA++NPFVFKHISNLKGIDHF+DIGPCV++ASPGMMQSGLSRELFESWCTD+KNG I+AGYCVEGTLAK ILSEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIR LKPPHV+LVHGE NEM RLK+AL REYE DP T ++ +NPRNTVAV+LYFRGEK AKV+G LAME P    ++SGVLVKRNFNYH+LA  DL KYTDM++S V QRQSVY+  S  +L+ L++Q++G LE+VD      K +R F  +D+  + ++VT+EW+A+PVNDMYAD+VL+A+LQAE +E+ P+ +P   K+D MHFKECL+EMLQ+MFGE+SVP  F G++  +TV+ KKAHID+ +L+V   ED+  Q I+QTA +KL  SL
Sbjct:   13 AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPPHVVLVHGEQNEMGRLKAALQREYEDDPSTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPRPGQKLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLPVLKHLLTQIAGSLEVVD-----DKKLRVFKNVDVTIDGKIVTMEWVATPVNDMYADSVLTAILQAEIMEQSPKVLPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLEVTSKEDETFQQIVQTAVTKLHQSL 679
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Match: gi|1080066061|ref|XP_018575214.1| (cleavage and polyadenylation specificity factor 73 [Anoplophora glabripennis])

HSP 1 Score: 1083.17 bits (2800), Expect = 0.000e+0
Identity = 496/672 (73.81%), Postives = 596/672 (88.69%), Query Frame = 0 
Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEKP-RYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSL 688
            ++E D++ I PLGAGQEVGRSC ++EFK K+++LDCGIHPGL+GMDALPFVD+IEAD+IDLLLISHFHLDH GALPWFLQKT+FKG+CFMTHATKAIYRWLLSD+IKVSNIATEQMLY+E DLE SM+KI+T+NFHEEK+V GIKFWAYNAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+PT+ PDVLI E+TYGTHIHEKREDRE RFT+ +H+IVNRGGRCLIPVFALGRAQELLLILDEYW+ HPELH+IPIYYASSLAKKCMAVYQT++NAMNDKIRRQIA++NPFVFKHISNLKGIDHF+DIGPCV++ASPGMMQSGLSRELFESWCTD+KNG I+AGYCVEGTLAK ILSEPEEIT M GQ+LPLK+ V YISFSAHTDY+QTS FIR LKPPHV+LVHGE NEM+RLK+AL REYE DP+T I  +NPRNT AV+LYFRGEK AKV+GNLA+++P     +SG+LVKRNFNYHIL+A+DL KYTD+++S + QRQS++Y G+   L++L+SQ++G LE +DT+++    +RAF AIDI  + ++VTLEW+A+PVNDMYADA+++A+LQA+ +E P + + T+ KVD MHFKECL+EMLQDMFGE+SVP  F G++  +TV  K+A ID+ +L+VKCP D+  Q I+ TA +KL  SL
Sbjct:   13 AEESDQLIIMPLGAGQEVGRSCIMIEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTEADLEASMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPTVHPDVLITESTYGTHIHEKREDRESRFTNLVHDIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELHDIPIYYASSLAKKCMAVYQTYINAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEPEEITTMVGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPHVVLVHGEQNEMNRLKAALQREYEDDPNTTIHLHNPRNTHAVELYFRGEKTAKVMGNLAIDEPKPGRTLSGILVKRNFNYHILSADDLSKYTDLSMSQIMQRQSIHYSGNMGALRYLISQVAGLLESIDTDKK----MRAFNAIDITLDHKIVTLEWVANPVNDMYADAIVAAILQADLLEVPIKNMSTSVKVDRMHFKECLIEMLQDMFGEDSVPKIFKGEKLYVTVNDKRADIDLSNLEVKCPSDETFQQIVHTAVTKLYQSL 680
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Match: gi|1068410897|ref|XP_018051823.1| (PREDICTED: uncharacterized protein LOC108689541 [Atta colombica])

HSP 1 Score: 1083.17 bits (2800), Expect = 0.000e+0
Identity = 496/672 (73.81%), Postives = 589/672 (87.65%), Query Frame = 0 
Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEK-PRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSL 688
            ++E D ++IRPLGAGQEVGRSC +LEFK K+++LDCGIHPGL+GMDALPFVD++EAD+IDLLLISHFHLDH GALPWFL KT+FKG+CFMTHATKAIYRWLLSD+IKVSNIATEQMLY+E DLETSM+KI+T+NFHEEK++ GIKFWAYNAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P + PDVLI E+TYGTHIHEKREDRE RFT+ +HEIVNRGGRCLIPVFALGRAQELLLILDEYW+ H ELHEIPIYYASSLAKKCMAVYQT+VNAMNDKIRRQIA++NPFVFKHISNLKGIDHF+DIGPCV++ASPGMMQSGLSRELFESWCTD+KNG I+AGYCVEGTLAK ILSEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIR LKPPHV+LVHGE NEM RLK+AL REYE DP+T ++ +NPRNTVAV+LYFRGEK AKV+G LAME P     +SGVLVKRNFNYH+LA  DL KYTDM++S V QRQSVY+  S  +L+ L++Q++G LE+VD      K +R F  +D+  + +++T+EWIA+PVNDMYAD+VL+A+LQAE +++ P+ +P   K+D MHFKECL+EMLQ+MFGE+SVP  F G++  +TV+ KKAHID+ +LDV   +D+  Q I+QTA +KL  SL
Sbjct: 1137 AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLLKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETINFHEEKDMFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPPHVVLVHGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPRPGQTLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLPVLKHLLTQIAGHLEVVD-----DKKLRIFKNVDVTIDGKIITMEWIATPVNDMYADSVLTAILQAEIMDQSPKVLPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLDVTS-KDETFQQIVQTAVTKLHQSL 1802
[Close]
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Match: gi|749784937|ref|XP_011146254.1| (PREDICTED: cleavage and polyadenylation specificity factor 73 [Harpegnathos saltator] >gi|307199387|gb|EFN80012.1| Cleavage and polyadenylation specificity factor subunit 3 [Harpegnathos saltator])

HSP 1 Score: 1083.17 bits (2800), Expect = 0.000e+0
Identity = 499/672 (74.26%), Postives = 591/672 (87.95%), Query Frame = 0 
Query:   18 SDEQDKMTIRPLGAGQEVGRSCHILEFKDKRVLLDCGIHPGLNGMDALPFVDMIEADKIDLLLISHFHLDHAGALPWFLQKTTFKGKCFMTHATKAIYRWLLSDFIKVSNIATEQMLYSEQDLETSMEKIDTLNFHEEKEVNGIKFWAYNAGHVLGAAMFMIEIAGVRVLYTGDFSREEDRHLMAAELPTLRPDVLIVEATYGTHIHEKREDREHRFTSTIHEIVNRGGRCLIPVFALGRAQELLLILDEYWAAHPELHEIPIYYASSLAKKCMAVYQTFVNAMNDKIRRQIAVSNPFVFKHISNLKGIDHFDDIGPCVILASPGMMQSGLSRELFESWCTDSKNGCIVAGYCVEGTLAKHILSEPEEITAMNGQRLPLKLQVSYISFSAHTDYKQTSGFIRALKPPHVILVHGEANEMSRLKSALIREYEADPDTNIDFYNPRNTVAVDLYFRGEKMAKVVGNLAMEKPIDDHRVSGVLVKRNFNYHILAANDLQKYTDMTISTVTQRQSVYYEGSFQLLQFLVSQLSGDLELVDTEQESKKIIRAFGAIDIVHEKRMVTLEWIASPVNDMYADAVLSAVLQAESIEK-PRYIPTNAKVDMMHFKECLLEMLQDMFGEESVPTTFSGDRFEITVESKKAHIDIGSLDVKCPEDDMLQNIIQTACSKLKLSL 688
            ++E D ++IRPLGAGQEVGRSC +LEFK KR++LDCGIHPGL+GMDALPFVD++EAD+IDLLLISHFHLDH GALPWFLQKT+FKG+CFMTHATKAIYRWLLSD+IKVSNIATEQMLY+E DLETSM+KI+T+NFHEEK+V GIKFWAYNAGHVLGAAMFMIEIAGV++LYTGDFSR+EDRHLMAAE+P + PDVLI E+TYGTHIHEKREDRE RFT+ +HEIVNRGGRCLIPVFALGRAQELLLILDEYW  H ELHEIPIYYASSLAKKCMAVYQT+VNAMNDKIRRQIA++NPFVFKHISNLKGIDHF+DIGPCV++ASPGMMQSGLSRELFESWCTD+KNG I+AGYCVEGTLAK ILSEPEEIT M+GQ+LPLK+ V YISFSAHTDY+QTS FIR LKPPHV+LVHGE NEM RLK+AL REYE DP+T ++ +NPRNTVAV+LYFRGEK AKV+G LAME P    ++SGVLVKRNFNYH+LA  DL KYTDM++S V QRQSVY+  S  +L+ L++Q++G+LE++D      K +R F  +D+  + ++VT+EWIA+PVNDMYAD+VL+A+LQAE +++ P+ +P   K+D MHFKECL+EMLQ+MFGE+SVP  F G++  +TV+ KKAHID+ +L+V   ED+  Q I+QTA +KL  SL
Sbjct:   12 AEESDLLSIRPLGAGQEVGRSCIMLEFKGKRIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWGQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKGILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPHVVLVHGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPKPGQKLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQRQSVYFSASLPVLKHLLTQIAGNLEVID-----DKKLRVFKNVDVTIDGKIVTMEWIATPVNDMYADSVLTAILQAEIMDQSPKMLPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLEVTSKEDETFQQIVQTAVTKLHQSL 678
The following BLAST results are available for this feature:
BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAG000000072820.000e+080.39supercontig:LSalAtl2s:LSalAtl2s409:129273:131364:-... [more]
EMLSAG000000000102.430e-10534.78supercontig:LSalAtl2s:LSalAtl2s1003:5798:7615:-1 g... [more]
EMLSAG000000118434.177e-3527.60supercontig:LSalAtl2s:LSalAtl2s831:281816:286361:1... [more]
EMLSAG000000113152.971e-1519.79supercontig:LSalAtl2s:LSalAtl2s77:664263:677061:-1... [more]
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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|75571225|sp|Q5ZIH0.1|INT11_CHICK1.178e-11039.44RecName: Full=Integrator complex subunit 11; Short... [more]
gi|82192739|sp|Q503E1.1|INT11_DANRE5.841e-10940.17RecName: Full=Integrator complex subunit 11; Short... [more]
gi|119371245|sp|Q3MHC2.1|INT11_RAT1.201e-10740.22RecName: Full=Integrator complex subunit 11; Short... [more]
gi|81904239|sp|Q9CWS4.1|INT11_MOUSE1.533e-10740.22RecName: Full=Integrator complex subunit 11; Short... [more]
gi|118572557|sp|Q5TA45.2|INT11_HUMAN3.551e-10740.44RecName: Full=Integrator complex subunit 11; Short... [more]

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BLAST of cleavage and polyadenylation specificity factor subunit 3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|987921609|ref|XP_015436983.1|0.000e+074.26PREDICTED: cleavage and polyadenylation specificit... [more]
gi|751229559|ref|XP_011168248.1|0.000e+074.26PREDICTED: cleavage and polyadenylation specificit... [more]
gi|1080066061|ref|XP_018575214.1|0.000e+073.81cleavage and polyadenylation specificity factor 73... [more]
gi|1068410897|ref|XP_018051823.1|0.000e+073.81PREDICTED: uncharacterized protein LOC108689541 [A... [more]
gi|749784937|ref|XP_011146254.1|0.000e+074.26PREDICTED: cleavage and polyadenylation specificit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold495_size155559supercontigscaffold495_size155559:23744..25822 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold495_size155559-processed-gene-0.4-mRNA-1snap_masked-scaffold495_size155559-processed-gene-0.4-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold495_size155559:23744..25822+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold495_size155559-processed-gene-0.4 ID=snap_masked-scaffold495_size155559-processed-gene-0.4|Name=cleavage and polyadenylation specificity factor subunit 3|organism=Tigriopus kingsejongensis|type=gene|length=2079bp|location=Sequence derived from alignment at scaffold495_size155559:23744..25822+ (Tigriopus kingsejongensis)
ATGGCCCTCAAGCGGGCCCACTCCCCGGGCTTCATCGTGGAGAGCACCTC
GAGCGATGAGCAGGACAAGATGACGATCCGCCCCCTGGGGGCGGGTCAGG
AGGTGGGCCGCTCCTGTCACATCCTCGAGTTCAAGGACAAGCGCGTTCTC
CTGGACTGCGGCATCCACCCGGGCCTCAACGGCATGGATGCCCTGCCCTT
CGTGGACATGATCGAGGCCGACAAGATCGACCTGCTGCTCATCTCGCATT
TCCATCTGGATCACGCCGGAGCCTTGCCCTGGTTCCTCCAGAAGACCACG
TTCAAGGGCAAGTGCTTCATGACGCACGCCACCAAGGCCATCTACCGCTG
GCTCCTCTCGGACTTCATCAAGGTGTCCAACATCGCCACGGAGCAGATGC
TCTACTCGGAGCAGGACCTGGAGACCAGCATGGAGAAGATCGACACGCTC
AACTTCCACGAGGAGAAGGAGGTGAACGGCATCAAGTTCTGGGCCTACAA
CGCCGGCCACGTCCTCGGCGCGGCCATGTTCATGATCGAAATCGCGGGCG
TGCGCGTGCTGTACACCGGCGACTTCTCCCGCGAGGAGGATCGCCATCTC
ATGGCCGCGGAGCTGCCCACCCTCAGGCCGGACGTGCTCATCGTGGAGGC
CACCTACGGCACGCACATCCACGAGAAGCGCGAGGATCGCGAGCACCGCT
TCACGTCCACCATCCACGAGATCGTGAACCGGGGCGGGCGCTGCCTCATA
CCGGTGTTCGCCCTGGGTCGGGCCCAGGAGCTGCTGCTCATCTTGGACGA
GTACTGGGCCGCGCATCCGGAGCTGCACGAGATCCCCATCTACTACGCCT
CCTCCCTGGCCAAGAAGTGCATGGCCGTCTACCAGACCTTCGTGAACGCC
ATGAACGACAAGATTCGACGCCAGATCGCCGTGAGCAACCCGTTCGTCTT
CAAGCACATCTCCAATCTCAAGGGCATCGACCACTTTGACGACATCGGCC
CCTGCGTGATCCTGGCCTCGCCGGGCATGATGCAGAGCGGTCTTTCGCGG
GAGCTCTTCGAGAGCTGGTGCACGGACTCCAAGAATGGCTGCATCGTGGC
CGGCTACTGCGTGGAGGGCACCCTGGCCAAGCATATCCTCTCCGAGCCCG
AGGAGATCACGGCCATGAACGGACAGAGGCTGCCGCTCAAGCTCCAAGTG
AGCTACATCTCGTTCTCGGCCCACACCGACTACAAGCAGACCAGTGGATT
CATCCGGGCTCTCAAGCCGCCCCACGTGATCCTCGTCCACGGCGAGGCCA
ACGAGATGAGCCGGCTCAAGTCGGCCTTGATCCGCGAGTACGAGGCGGAT
CCGGACACCAATATTGACTTCTACAATCCTCGCAACACCGTGGCCGTCGA
CCTCTACTTCCGCGGCGAGAAGATGGCCAAGGTGGTGGGCAATCTGGCCA
TGGAGAAGCCCATCGACGACCACCGGGTGTCGGGCGTGCTGGTCAAGCGC
AACTTCAACTACCATATCCTGGCCGCCAACGACCTCCAGAAGTACACGGA
TATGACGATCTCGACTGTGACGCAGCGACAGTCGGTCTACTACGAGGGCA
GCTTTCAGCTCCTCCAGTTCCTCGTGTCCCAACTCTCCGGCGACCTGGAG
CTGGTAGACACGGAGCAGGAGAGCAAGAAGATCATCCGGGCCTTCGGCGC
CATCGACATCGTGCACGAGAAGCGCATGGTCACCTTGGAGTGGATCGCCA
GTCCGGTCAACGATATGTACGCGGATGCCGTGCTTTCGGCCGTTCTCCAG
GCCGAGTCGATCGAGAAGCCCCGCTACATCCCCACCAACGCCAAGGTGGA
CATGATGCATTTCAAGGAGTGCCTCTTGGAAATGCTCCAAGACATGTTTG
GCGAGGAATCCGTGCCCACCACCTTCAGTGGAGATCGCTTCGAGATCACG
GTCGAGTCCAAGAAGGCCCACATCGACATCGGCAGTCTGGACGTGAAATG
CCCCGAGGACGACATGCTCCAGAACATCATTCAAACGGCGTGCTCCAAAC
TCAAGCTCTCGCTAATGTTGGATGAGTGA
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Synonyms
The feature 'cleavage and polyadenylation specificity factor subunit 3' has the following synonyms
Synonym
Tk09235
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