daf-12 c1, snap_masked-scaffold497_size155254-processed-gene-0.9 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of daf-12 c1 vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18") HSP 1 Score: 65.855 bits (159), Expect = 4.356e-11 Identity = 33/86 (38.37%), Postives = 44/86 (51.16%), Query Frame = 0 Query: 508 CAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFR 593 C +C FH YG +C SC+ FF+R VQ+ K C R C ++ S R KC CRF C+ GM +EA+ + DR R Sbjct: 155 CPVCGDKISGFH--YGIFSCESCKGFFKRTVQNKKN--YVCLRGSQCPVTISTRKKCPACRFDKCLNIGMKLEAI-----REDRTR 231
BLAST of daf-12 c1 vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5") HSP 1 Score: 63.5438 bits (153), Expect = 1.595e-10 Identity = 34/99 (34.34%), Postives = 47/99 (47.47%), Query Frame = 0 Query: 487 PSNDSLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNE 585 P N LSGS+ C+IC + H YG +C C+ FF+R V+ T AC+ + C I R +C+ CR+ C+ GM EAV E Sbjct: 79 PPNHPLSGSKH---------FCSICGDRASGKH--YGVYSCEGCKGFFKRTVRKELT--YACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEE 164
BLAST of daf-12 c1 vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1") HSP 1 Score: 64.3142 bits (155), Expect = 1.734e-10 Identity = 32/91 (35.16%), Postives = 45/91 (49.45%), Query Frame = 0 Query: 503 RRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFR 593 + S +CA+C N+ H YG TC C+ FF+R VQ K + C C + R +C+ CRF+ C+ GM E V + K R R Sbjct: 404 KASLLCAVCGDNAACQH--YGVRTCEGCKGFFKRTVQ--KNAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGR 490
BLAST of daf-12 c1 vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53") HSP 1 Score: 63.1586 bits (152), Expect = 4.122e-10 Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 0 Query: 503 RRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAV 582 ++S +C IC + H YG TC C+ FF+R VQ+ + C C I+ + R +C+ CRF+ C++ GM + AV Sbjct: 278 QQSLVCMICEDRATGLH--YGIITCEGCKGFFKRTVQNKRI--YTCVADGECEINKAQRNRCQYCRFQKCLQKGMVLAAV 353
BLAST of daf-12 c1 vs. L. salmonis genes
Match: EMLSAG00000009940 (supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-1 gene:EMLSAG00000009940 transcript:EMLSAT00000009940 description:"maker-LSalAtl2s649-augustus-gene-4.7") HSP 1 Score: 62.7734 bits (151), Expect = 5.287e-10 Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 0 Query: 508 CAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAV 582 C +C S H YG TC C++FF+R V+ T + C+ S +C I +R +C+ CR K CI+ GM EAV Sbjct: 434 CVVCGDKSSGKH--YGQFTCEGCKSFFKRSVRRALTYQ--CRGSRSCPIDQHHRNQCQHCRLKKCIKMGMRKEAV 504
BLAST of daf-12 c1 vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10") HSP 1 Score: 60.8474 bits (146), Expect = 1.326e-9 Identity = 39/140 (27.86%), Postives = 64/140 (45.71%), Query Frame = 0 Query: 468 VSNVAMYVNQGVNSNSLLEPSNDS------LSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFRNYDNMWKR 601 +N+A Y G + L ++++ + EEG + + C +C + FH YG +C +C+AFF+R +Q S+ C I+ R C+ CRF+ C+R GM E V + DR R ++R Sbjct: 230 TTNIASYAPPGSPDHHLCSSTSETNLFSRDIIKEEEG-----QRRTCLVCGDIASGFH--YGVSSCEACKAFFKRTIQGNI--EYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGV-----RLDRVRGGRQKYRR 355
BLAST of daf-12 c1 vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7") HSP 1 Score: 60.4622 bits (145), Expect = 1.460e-9 Identity = 26/78 (33.33%), Postives = 40/78 (51.28%), Query Frame = 0 Query: 508 CAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNE 585 C +C +S H YG C C FF+R ++ + K +C + ++R +CR CR K C+ GMN +AV +E Sbjct: 34 CKVCTDHSSGKH--YGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHE 109
BLAST of daf-12 c1 vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0") HSP 1 Score: 60.077 bits (144), Expect = 2.327e-9 Identity = 30/90 (33.33%), Postives = 43/90 (47.78%), Query Frame = 0 Query: 496 EEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNE 585 ++G +S ++C +C + +H Y A C C+ FFRR + K CK + C I R KC+ CR K C GM E V+ E Sbjct: 161 KKGSSSRPAEELCLVCGDRASGYH--YNALACEGCKGFFRRSIT--KNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPE 246
BLAST of daf-12 c1 vs. L. salmonis genes
Match: EMLSAG00000009941 (supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-1 gene:EMLSAG00000009941 transcript:EMLSAT00000009941 description:"maker-LSalAtl2s649-snap-gene-4.11") HSP 1 Score: 58.9214 bits (141), Expect = 3.530e-9 Identity = 28/75 (37.33%), Postives = 39/75 (52.00%), Query Frame = 0 Query: 508 CAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAV 582 C +C S H YG TC C++FF+R V+ T C+ S C + +R +C+ CR K C + GM EAV Sbjct: 83 CVVCGDKSSGKH--YGQFTCEGCKSFFKRSVRRNLT--YQCRGSKNCPVDQHHRNQCQHCRLKKCFKMGMRREAV 153
BLAST of daf-12 c1 vs. L. salmonis genes
Match: EMLSAG00000005619 (supercontig:LSalAtl2s:LSalAtl2s301:354064:356113:1 gene:EMLSAG00000005619 transcript:EMLSAT00000005619 description:"maker-LSalAtl2s301-augustus-gene-3.7") HSP 1 Score: 56.6102 bits (135), Expect = 2.453e-8 Identity = 25/75 (33.33%), Postives = 41/75 (54.67%), Query Frame = 0 Query: 504 RSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMN 578 ++++C +C + FH +GA TC C++FF R + + CK + C + NRT C+ CR + CI GM+ Sbjct: 53 QNQLCRVCEEPAAGFH--FGAFTCEGCKSFFGRTCNNQSVIQ-ECKNNYRCVVDKKNRTACKACRLRKCIMVGMS 124
BLAST of daf-12 c1 vs. SwissProt
Match: gi|10720139|sp|Q9XTJ4.1|NHR3_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-3) HSP 1 Score: 86.6557 bits (213), Expect = 2.813e-16 Identity = 43/118 (36.44%), Postives = 60/118 (50.85%), Query Frame = 0 Query: 477 QGVNSNSLLEPSNDSLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFRN 594 Q + SLL+P S S E G G S IC++C + H YG C C+ FFRR V++GK C+ S C I + R CR CRF+ C+ GM +A+ + +K R +N Sbjct: 22 QTFSMESLLKPELGEYSPSGENGIDGEESTICSVCCDEASGRH--YGVVACFGCKGFFRRTVRAGKN--YVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKTGRQKN 135
BLAST of daf-12 c1 vs. SwissProt
Match: gi|75025546|sp|Q9U2R6.2|NHR91_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-91) HSP 1 Score: 79.337 bits (194), Expect = 5.521e-14 Identity = 44/120 (36.67%), Postives = 61/120 (50.83%), Query Frame = 0 Query: 487 PSNDSLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRF---RNYDNMWKRAK 603 P+ DS S S SK+C++C S H YGA TC C+ FF+R VQ+ K C + + C I NR +C+ CRF+ CI GM EAV + DR RN ++++ K Sbjct: 83 PTTDSTSN----AVSKSSSKLCSVCGDKSTGLH--YGAATCEGCKGFFKRSVQNKKV--YHCSQDNCCEIDKQNRNRCQSCRFRKCISKGMLTEAV-----REDRMPGGRNGNSIYSNYK 189
BLAST of daf-12 c1 vs. SwissProt
Match: gi|17369898|sp|Q9XUK7.2|NHR85_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-85) HSP 1 Score: 77.7962 bits (190), Expect = 2.314e-13 Identity = 46/148 (31.08%), Postives = 73/148 (49.32%), Query Frame = 0 Query: 459 PAWERDGFKVSNVAMYVNQGVNSNSLLEPSNDSLSGS-----EEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAV-MNELEKHDRFRNYDNMWK 600 P D F +S + V N + E + +L GS +E ++ + +C +C + FH YG C C+ FFRR +Q T R AC R++ C I +NR +C+ CR K C+ GM+ +AV + K ++ R ++ M K Sbjct: 61 PQPAMDTFYMSAIQSLVVSTTNDDQYSE--HGALEGSKSLAKDENASTSAGTILCQVCSDKASGFH--YGVFACEGCKGFFRRSIQQKITYR-ACTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRDAVRFGRVPKREKARMFEEMQK 203
BLAST of daf-12 c1 vs. SwissProt
Match: gi|148886624|sp|P41235.3|HNF4A_HUMAN (RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha; AltName: Full=Nuclear receptor subfamily 2 group A member 1; AltName: Full=Transcription factor 14; Short=TCF-14; AltName: Full=Transcription factor HNF-4) HSP 1 Score: 75.8702 bits (185), Expect = 7.476e-13 Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 0 Query: 505 SKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEK 588 S +CAIC + H YGA +C C+ FFRR V+ K +C+ S C + R +CR CR K C RAGM EAV NE ++ Sbjct: 57 SALCAICGDRATGKH--YGASSCDGCKGFFRRSVR--KNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDR 136
BLAST of daf-12 c1 vs. SwissProt
Match: gi|148886626|sp|P22449.3|HNF4A_RAT (RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha; AltName: Full=Nuclear receptor subfamily 2 group A member 1; AltName: Full=Transcription factor 14; Short=TCF-14; AltName: Full=Transcription factor HNF-4) HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-12 Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 0 Query: 505 SKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEK 588 S +CAIC + H YGA +C C+ FFRR V+ K +C+ S C + R +CR CR K C RAGM EAV NE ++ Sbjct: 57 SALCAICGDRATGKH--YGASSCDGCKGFFRRSVR--KNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDR 136
BLAST of daf-12 c1 vs. SwissProt
Match: gi|148886625|sp|P49698.2|HNF4A_MOUSE (RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha; AltName: Full=Nuclear receptor subfamily 2 group A member 1; AltName: Full=Transcription factor 14; Short=TCF-14; AltName: Full=Transcription factor HNF-4) HSP 1 Score: 75.0998 bits (183), Expect = 1.253e-12 Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 0 Query: 505 SKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEK 588 S +CAIC + H YGA +C C+ FFRR V+ K +C+ S C + R +CR CR K C RAGM EAV NE ++ Sbjct: 57 SALCAICGDRATGKH--YGASSCDGCKGFFRRSVR--KNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDR 136
BLAST of daf-12 c1 vs. SwissProt
Match: gi|148886627|sp|Q91766.2|HNF4A_XENLA (RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha; AltName: Full=Nuclear receptor subfamily 2 group A member 1) HSP 1 Score: 75.0998 bits (183), Expect = 1.257e-12 Identity = 40/98 (40.82%), Postives = 52/98 (53.06%), Query Frame = 0 Query: 491 SLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEK 588 SLS S G + +CAIC + H YGA +C C+ FFRR V+ K +C+ S C + R +CR CR K C RAGM EAV NE ++ Sbjct: 47 SLSASNSIGINS----LCAICGDRATGKH--YGASSCDGCKGFFRRSVR--KNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDR 136
BLAST of daf-12 c1 vs. SwissProt
Match: gi|81907060|sp|Q9QWM1.1|NR5A2_RAT (RecName: Full=Nuclear receptor subfamily 5 group A member 2; AltName: Full=FTZ-F1 beta; AltName: Full=Liver receptor homolog 1; Short=LRH-1) HSP 1 Score: 75.0998 bits (183), Expect = 1.665e-12 Identity = 39/103 (37.86%), Postives = 53/103 (51.46%), Query Frame = 0 Query: 506 KICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFRNYDN----MWKRAKG 604 ++C +C +H YG TC SC+ FF+R VQ+ K R C + C I + R +C CRFK CI GM +EAV + DR R N M+KR + Sbjct: 105 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQNQK--RYTCIENQNCQIDKTQRKRCPYCRFKKCIDVGMKLEAV-----RADRMRGGRNKFGPMYKRDRA 198
BLAST of daf-12 c1 vs. SwissProt
Match: gi|7676159|sp|P45448.3|NR5A2_MOUSE (RecName: Full=Nuclear receptor subfamily 5 group A member 2; AltName: Full=Liver receptor homolog 1; Short=LRH-1) HSP 1 Score: 75.0998 bits (183), Expect = 1.708e-12 Identity = 39/103 (37.86%), Postives = 53/103 (51.46%), Query Frame = 0 Query: 506 KICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFRNYDN----MWKRAKG 604 ++C +C +H YG TC SC+ FF+R VQ+ K R C + C I + R +C CRFK CI GM +EAV + DR R N M+KR + Sbjct: 105 ELCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQNQK--RYTCIENQNCQIDKTQRKRCPYCRFKKCIDVGMKLEAV-----RADRMRGGRNKFGPMYKRDRA 198
BLAST of daf-12 c1 vs. SwissProt
Match: gi|75063008|sp|Q6QMY5.1|ERR1_CANFA (RecName: Full=Steroid hormone receptor ERR1; AltName: Full=Estrogen-related receptor alpha; Short=ERR-alpha; AltName: Full=Nuclear receptor subfamily 3 group B member 1) HSP 1 Score: 73.559 bits (179), Expect = 3.176e-12 Identity = 42/130 (32.31%), Postives = 62/130 (47.69%), Query Frame = 0 Query: 506 KICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFRNYDNMWKRAKGEGDPDEEEAGSPPVPQKIQFMAKPHGSAAGP 635 ++C +C + +H YG +C +C+AFF+R +Q + +C S+ C I+ R C+ CRF C+R GM E V + DR R +KR + E D P+P F A P A GP Sbjct: 77 RLCLVCGDVASGYH--YGVASCEACKAFFKRTIQG--SIEYSCPASNECEITKRRRKACQACRFTKCLRVGMLKEGV-----RLDRVRGGRQKYKR-RPEVD---------PLPFPGSFPAGPLAVAGGP 187
BLAST of daf-12 c1 vs. nr
Match: gi|657600362|gb|AID52842.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0 Identity = 298/491 (60.69%), Postives = 378/491 (76.99%), Query Frame = 0 Query: 735 KVEPRDI-EVVDQRVAPRLCSTGEHRQVLFLSLIWSESLSKMKINQRFLDSLIQFHKHSGVYTKPMLHEHLKTIGQHFLDFAVQIPEFKALTPNDQVKQLDRAVPMFISFIFAKYLGLPTGSEQFQWLFLLKSIPVDLQPTSFYEVNLALNLLQDTRKTVQCGNLVDIVAKIQVDLSKVFTVACACLFDPHPETQYDSLEQLVQSQETVLGYFALDRGHLWELIDAINRLSEIYTKMDWNNPMSISTLRMPFTDVEENWMDQGWSLINRCFQKVPLGEDHIKQVIASELFDVPFPPNFFRNYLGLWSKRFLAILQLFDEFQDLSNENQCRLWQSISNKLFSITMIKFESLPDAVSQLRFALGFEDMNTLEEMIRPWGTILEVMPRMGMKRSNRLNKFFDKAMEGRIEVMKREVAEVLQDVQIFSNCFMFLLFSQGKCMFPGYRIATLSDQYLRGMYRKLDAETVDPTIAIARLDKCLSNLDPYQELCDTLF 1224 K EP ++ E DQ +T EHRQVL LSL+WSE LSKMKINQRFLDSLIQFHK +G YTK M+ +HL IG F D+A QIPEFK L+ NDQ KQL+RA+PMFISFIFAKYLG GSEQFQWLFLLKS P+D+ PT+ Y VNL+LNLLQDT KT +C NL+ +AKI VD SKVFT+ACACLF+PHPE + DS+EQ++Q+QE VLGYF+LDRG LWELIDA RLS +Y M W + + ++++PFTD+E +WMD+ +I++ FQ+V LGE+H+K VIASELF+VPFPPNFF+ YL LWSKRFL ILQ F+EF LS+ NQC LWQ+ + K+F++T+IKFE PDA+SQLRFALG ED+ TLEEMIRPWG I EVMP+MGMKRSNR+NKFFDK E IE MK +A+V+ D +IF N FM+LL ++ K + P IA++ D++L +YRKLD + D +++ +L+KC+++L+ Y + LF Sbjct: 321 KREPSEVQETEDQHP-----TTTEHRQVLLLSLLWSECLSKMKINQRFLDSLIQFHKRTGSYTKAMILDHLNNIGALFQDYAKQIPEFKTLSTNDQHKQLERAIPMFISFIFAKYLGSTNGSEQFQWLFLLKSTPIDIDPTNLYAVNLSLNLLQDTVKTARCENLIKTIAKIPVDQSKVFTIACACLFEPHPEAECDSVEQIIQNQEKVLGYFSLDRGSLWELIDATRRLSLLYASMSWESTPRLKSIQLPFTDMENSWMDEACLMISKSFQEVALGEEHMKHVIASELFEVPFPPNFFQEYLKLWSKRFLTILQGFEEFNTLSSANQCLLWQATAKKVFTMTLIKFEHEPDAISQLRFALGVEDIQTLEEMIRPWGAIPEVMPKMGMKRSNRVNKFFDKEQEEIIEEMKSSIAKVIDDKKIFGNLFMYLLLAEAKNVLPKESIASIGDRHLTVLYRKLDNDG-DSKVSVDQLNKCIADLNTYNAQIEPLF 805 HSP 2 Score: 193.356 bits (490), Expect = 4.969e-47 Identity = 84/131 (64.12%), Postives = 108/131 (82.44%), Query Frame = 0 Query: 473 MYVNQGVNSNSLLEPSNDSLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFRNYDNMWKRAK 603 M + G N++ E +N+S + SGRRSKICAICLTNS+SFHLNYGAPTCLSCRAFFRRIVQ+G+ ++L CKR++ C+++ SNRTKCRKCR +AC++AGMNM++VMNE++KHDRFRNYD MWKR + Sbjct: 1 MSEDDGDNNSPKPETTNES-NDKFPDDPSGRRSKICAICLTNSDSFHLNYGAPTCLSCRAFFRRIVQNGRVNKLTCKRNNDCDVTQSNRTKCRKCRLEACLKAGMNMQSVMNEIQKHDRFRNYDKMWKRTR 130
BLAST of daf-12 c1 vs. nr
Match: gi|657600358|gb|AID52840.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 95.1301 bits (235), Expect = 2.604e-16 Identity = 45/106 (42.45%), Postives = 61/106 (57.55%), Query Frame = 0 Query: 489 NDSLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFRN 594 +D SG E S ++ C IC + HL+YGA TC SC+AFFRR QS + CK + CN+ + R KCRKCR++ CIR GM V+++ EK RF+ Sbjct: 10 DDGTSGMETEDVSMEPTEECQIC-QDPAIRHLHYGAITCFSCKAFFRRTSQSKAYQKFMCKSTGECNVLHKLRKKCRKCRYEKCIRVGMKPSLVLSDEEKIKRFKK 114
BLAST of daf-12 c1 vs. nr
Match: gi|17568425|ref|NP_510423.1| (Nuclear hormone receptor family member nhr-3 [Caenorhabditis elegans] >gi|10720139|sp|Q9XTJ4.1|NHR3_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-3 >gi|3878017|emb|CAA16168.1| Nuclear hormone receptor family member nhr-3 [Caenorhabditis elegans] >gi|4139070|gb|AAD03680.1| nuclear receptor NHR-3 [Caenorhabditis elegans] >gi|10197967|gb|AAG15118.1| nuclear receptor NHR-3 [Caenorhabditis elegans]) HSP 1 Score: 86.6557 bits (213), Expect = 8.720e-14 Identity = 43/118 (36.44%), Postives = 60/118 (50.85%), Query Frame = 0 Query: 477 QGVNSNSLLEPSNDSLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFRN 594 Q + SLL+P S S E G G S IC++C + H YG C C+ FFRR V++GK C+ S C I + R CR CRF+ C+ GM +A+ + +K R +N Sbjct: 22 QTFSMESLLKPELGEYSPSGENGIDGEESTICSVCCDEASGRH--YGVVACFGCKGFFRRTVRAGKN--YVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKTGRQKN 135
BLAST of daf-12 c1 vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis]) HSP 1 Score: 85.5001 bits (210), Expect = 3.967e-13 Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0 Query: 508 CAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEKHDRFR 593 C IC + H++YGA TC SCRAFFRR +Q+ + C+RS C I+ R C+ CR++ C+ GM V++E E+ RFR Sbjct: 41 CKIC-NEPAAKHIHYGAMTCFSCRAFFRRSIQNKTANSYTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRRFR 125
BLAST of daf-12 c1 vs. nr
Match: gi|926653773|ref|XP_013793497.1| (vitamin D3 receptor-like, partial [Limulus polyphemus]) HSP 1 Score: 80.4925 bits (197), Expect = 6.998e-13 Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 0 Query: 481 SNSLLEPSNDSLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEK 588 S + +EP++ S T ++ K C +C ++S+H +G +C SC+AFFRR VQS C TC I+ S+R C+ CRF+ C+ GM VM E E+ Sbjct: 8 SATFIEPTDPSF-------TPAKKLKFCKVCGDRAKSYH--FGGLSCDSCKAFFRRSVQSAGYKNFQCPYRRTCEITISSRKCCQFCRFQKCVAIGMEKGWVMTEEER 106
BLAST of daf-12 c1 vs. nr
Match: gi|1241828755|gb|PBC25281.1| (Transcription factor HNF-4 [Apis cerana cerana]) HSP 1 Score: 80.1073 bits (196), Expect = 7.846e-13 Identity = 42/98 (42.86%), Postives = 54/98 (55.10%), Query Frame = 0 Query: 491 SLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEK 588 +LSGS G G S+ CAIC + H YGA +C C+ FFRR V+ K C+ S C I R +CR CR + C +AGM MEAV NE ++ Sbjct: 12 TLSGS---GVGGVLSQHCAICGDRATGKH--YGAASCDGCKGFFRRSVR--KKHEYTCRFSRNCIIDKDKRNQCRYCRLRKCFKAGMKMEAVQNERDR 102
BLAST of daf-12 c1 vs. nr
Match: gi|1316197142|ref|XP_023244311.1| (hepatocyte nuclear factor 4-gamma-like [Centruroides sculpturatus]) HSP 1 Score: 83.1889 bits (204), Expect = 7.902e-13 Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 0 Query: 478 GVNSNSLLEPSNDSLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEK 588 G+NS +LL ND+++ + + + C+IC + H YGA +C C+ FFRR V+ K R C++ C I + R +CR CRFK C + GM +EAV NE +K Sbjct: 79 GLNSGNLLSNQNDNVNIVSSSSDNQQFNFECSICGDKASGKH--YGAYSCDGCKGFFRRSVR--KNQRYRCRKDSNCIIDKNGRNQCRFCRFKKCYQVGMKIEAVQNERDK 185
BLAST of daf-12 c1 vs. nr
Match: gi|675863136|ref|XP_009017128.1| (hypothetical protein HELRODRAFT_79060, partial [Helobdella robusta] >gi|555701316|gb|ESO04549.1| hypothetical protein HELRODRAFT_79060, partial [Helobdella robusta]) HSP 1 Score: 78.5666 bits (192), Expect = 1.000e-12 Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0 Query: 504 RSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEA 581 RS C +C S FH +GA TC C+ FFRR+++ + C + CNI +NRT C+ CRF CI+ GM +E Sbjct: 80 RSIPCKVCKAPSSGFH--FGAITCEGCKGFFRRMLKEQVHRKFICSNDERCNIDSANRTTCKSCRFNKCIKIGMTLEG 155
BLAST of daf-12 c1 vs. nr
Match: gi|572316407|ref|XP_006623829.1| (PREDICTED: transcription factor HNF-4 homolog isoform X1 [Apis dorsata]) HSP 1 Score: 83.1889 bits (204), Expect = 1.046e-12 Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 0 Query: 466 FKVSNVAMYVNQGVNSNSLLEPSNDSLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEK 588 F+V + + + G S+L +LSGS G G S+ CAIC + H YGA +C C+ FFRR V+ K C+ S C I R +CR CR + C +AGM MEAV NE ++ Sbjct: 8 FEVLDADLSMGAGAAGGSVL-----TLSGS---GVGGVLSQHCAICGDRATGKH--YGAASCDGCKGFFRRSVR--KKHEYTCRFSRNCIIDKDKRNQCRYCRLRKCFKAGMKMEAVQNERDR 118
BLAST of daf-12 c1 vs. nr
Match: gi|572316409|ref|XP_006623830.1| (PREDICTED: transcription factor HNF-4 homolog isoform X2 [Apis dorsata]) HSP 1 Score: 83.1889 bits (204), Expect = 1.094e-12 Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 0 Query: 466 FKVSNVAMYVNQGVNSNSLLEPSNDSLSGSEEGGTSGRRSKICAICLTNSESFHLNYGAPTCLSCRAFFRRIVQSGKTDRLACKRSDTCNISYSNRTKCRKCRFKACIRAGMNMEAVMNELEK 588 F+V + + + G S+L +LSGS G G S+ CAIC + H YGA +C C+ FFRR V+ K C+ S C I R +CR CR + C +AGM MEAV NE ++ Sbjct: 8 FEVLDADLSMGAGAAGGSVL-----TLSGS---GVGGVLSQHCAICGDRATGKH--YGAASCDGCKGFFRRSVR--KKHEYTCRFSRNCIIDKDKRNQCRYCRLRKCFKAGMKMEAVQNERDR 118 The following BLAST results are available for this feature:
BLAST of daf-12 c1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 23
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BLAST of daf-12 c1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of daf-12 c1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold497_size155254:103658..142498- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold497_size155254-processed-gene-0.9 ID=snap_masked-scaffold497_size155254-processed-gene-0.9|Name=daf-12 c1|organism=Tigriopus kingsejongensis|type=gene|length=38841bp|location=Sequence derived from alignment at scaffold497_size155254:103658..142498- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'daf-12 c1' has the following synonyms
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