achain solution structure of the matrix attachment region-binding domain of chicken mecp2, snap_masked-scaffold51_size454968-processed-gene-1.4 (gene) Tigriopus kingsejongensis

Overview
Nameachain solution structure of the matrix attachment region-binding domain of chicken mecp2
Unique Namesnap_masked-scaffold51_size454968-processed-gene-1.4
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. L. salmonis genes
Match: EMLSAG00000007132 (supercontig:LSalAtl2s:LSalAtl2s402:19657:23163:-1 gene:EMLSAG00000007132 transcript:EMLSAT00000007132 description:"snap_masked-LSalAtl2s402-processed-gene-0.3")

HSP 1 Score: 239.965 bits (611), Expect = 3.144e-68
Identity = 201/476 (42.23%), Postives = 241/476 (50.63%), Query Frame = 0 
Query:  224 KFRYPSGANNSVQSSSASSPPHLDGRGGRAVTPSSALSSREGTPMPSTNHRDEPP-APNVDISKVQAKELQQHNNKQQQMQSFMQSQVTGAGSSAAV------------VAAPSLAQQNF-HFGMGASPSI--APSSRGFVGSSPTSSYFPSSAPVNSMLDSSIAQRPPKQRPQREASLH-------VKIGRRPAHLPKVLKFTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEKNNLNHDPEDFDFTPYGRHIES----------------------------------RTNHTSNTPGSGVTSGSVGNMDSTTASRHNSSGSTGSNGTHPESCSPSSIP-YSPTHSLNNYMPPSMAFSTASTTTAGFMPSG----ASSFSEYNSFTHFDPHMDNPPNANVLDVPP-----NDFNPLTAGSTMPYAHLGRGHHHPIINKAGTMGSEFFPSSDMAELIG 632
            KFRYPSG        S +SP        R  TPSS LSSREGTP+PS +       APNVDIS+V   E   HNN      S   +   GA  +AA+             AAPS A     H+    SP     P  + F+ + P      +   V  M      +     R +R  S +       VKIGRRPAHLPK LKF DKTLPPGW+RKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLK FFEKNNLN+DPEDFDFTPYGRH+++                                   +NH SN         S G ++   + RHNSSGSTGS GTH E  SP+S+   SPTH       PS      S +++ F P G    AS  SEYN +  FDP M+NPPNA+ LDVPP     N   P+         HL   +     + AG +   +FP  +MAE++G
Sbjct:  240 KFRYPSGP-------SGASP--------RTTTPSSTLSSREGTPLPSNSSDSTSVSAPNVDISRVHLDEFF-HNNYSPSSSSSSSTPTRGA--AAAIKSEFPXAGPPQNCAAPSSAFSTLSHYN---SPGFLYGPPPQQFLSNPPQQCITLTQRTVQQMRSKGGLEFTGAPRGRRPGSSNLGPGGSNVKIGRRPAHLPKNLKFDDKTLPPGWVRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKSFFEKNNLNYDPEDFDFTPYGRHLDAAARANTSNSSSGGAGSSSNNKSGGNNNTNNXAAVMSNHNSNN--------SAG-VEMVNSGRHNSSGSTGSEGTH-EGSSPASLQNCSPTH-------PSGGGHLYSNSSSTFGPLGSHLSASGNSEYN-YPSFDPLMENPPNASALDVPPPAEIYNHRVPIQ-------PHLKTDN-----SGAGILSPGYFP-MEMAEILG 663
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. L. salmonis genes
Match: EMLSAG00000004995 (supercontig:LSalAtl2s:LSalAtl2s260:324794:336233:-1 gene:EMLSAG00000004995 transcript:EMLSAT00000004995 description:"maker-LSalAtl2s260-snap-gene-3.63")

HSP 1 Score: 82.8037 bits (203), Expect = 2.458e-16
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:  399 KVLKFTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEKN-NLNHDPEDFDFTPYG 468
            +V  + D  LPPGW RK+ QRK G  AGR++V+I  P G +F SR +LK +FE+      DP+DFDF+ +G
Sbjct:  694 RVPLYEDDRLPPGWYRKVSQRKSGASAGRYEVFIVGPTGKRFRSRNELKAYFEQTGESTLDPDDFDFSTFG 764
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. L. salmonis genes
Match: EMLSAG00000005752 (supercontig:LSalAtl2s:LSalAtl2s309:840524:845329:-1 gene:EMLSAG00000005752 transcript:EMLSAT00000005752 description:"snap_masked-LSalAtl2s309-processed-gene-7.54")

HSP 1 Score: 55.4546 bits (132), Expect = 4.677e-8
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 0 
Query:  408 LPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEKNNLNHDPEDFDFT 465
            LP GW +++ QR  G   G+WDV+I +  G  F S+ +L+  F++N+LN+  + FDF+
Sbjct:  707 LPDGWEKRVIQRGLGVTRGKWDVFIQNASGKSFRSKTELQKHFDENHLNYSIDSFDFS 764
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. SwissProt
Match: gi|12585281|sp|Q9Z2D6.1|MECP2_MOUSE (RecName: Full=Methyl-CpG-binding protein 2; Short=MeCp-2 protein; Short=MeCp2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.519e-14
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRHIESRTNH 477
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR   SR   
Sbjct:   95 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQ 170
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. SwissProt
Match: gi|1708973|sp|P51608.1|MECP2_HUMAN (RecName: Full=Methyl-CpG-binding protein 2; Short=MeCp-2 protein; Short=MeCp2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.657e-14
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRHIESRTNH 477
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR   SR   
Sbjct:   95 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQ 170
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. SwissProt
Match: gi|266521|sp|Q00566.1|MECP2_RAT (RecName: Full=Methyl-CpG-binding protein 2; Short=MeCp-2 protein; Short=MeCp2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.712e-14
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRHIESRTNH 477
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR   SR   
Sbjct:   95 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQ 170
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. SwissProt
Match: gi|50401118|sp|Q95LG8.1|MECP2_MACFA (RecName: Full=Methyl-CpG-binding protein 2; Short=MeCp-2 protein; Short=MeCp2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.826e-14
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRHIESRTNH 477
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR   SR   
Sbjct:   95 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQ 170
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. SwissProt
Match: gi|50400819|sp|O95243.1|MBD4_HUMAN (RecName: Full=Methyl-CpG-binding domain protein 4; AltName: Full=Methyl-CpG-binding endonuclease 1; AltName: Full=Methyl-CpG-binding protein MBD4; AltName: Full=Mismatch-specific DNA N-glycosylase)

HSP 1 Score: 66.6254 bits (161), Expect = 3.855e-10
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 0 
Query:  406 KTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEKN-NLNHDPEDFDFTPYG-RHIESRTNHTS 479
            K++P GW R +KQR  GK AGR+DVY  SP G+KF S+  L  +  KN   +  PEDFDFT    R I+SR    S
Sbjct:   84 KSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCS 159
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. SwissProt
Match: gi|50401208|sp|Q9Z2D7.1|MBD4_MOUSE (RecName: Full=Methyl-CpG-binding domain protein 4; AltName: Full=Methyl-CpG-binding protein MBD4; AltName: Full=Mismatch-specific DNA N-glycosylase)

HSP 1 Score: 60.077 bits (144), Expect = 3.843e-8
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0 
Query:  406 KTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEKNNLNH-DPEDFDFT 465
            K +P GW R +KQR  GK AG++DVY  SP G+KF S++ L  +  KN      PEDF+FT
Sbjct:   71 KPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFT 131
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Match: gi|1325280675|ref|XP_023325004.1| (uncharacterized protein LOC111698797 [Eurytemora affinis])

HSP 1 Score: 195.282 bits (495), Expect = 4.020e-49
Identity = 159/412 (38.59%), Postives = 203/412 (49.27%), Query Frame = 0 
Query:  193 PNASSPSTTADTNGNLSPSSSERIDTNSTHNKFRYPSGANNSVQSSSASSPPHLDGRGGRAVTPSSALSSREGTPMPSTNHRDEPP--APNVDISKVQAKEL--------QQHNNKQQQMQSFMQSQVTGA-GSSAAVVAAP--SLAQQNFHFGMGASPSIAPSSRGFVGSSPTSSYFPSSAPVNSMLDSSIAQRPPKQRPQREASLHVKIGRRPAHLPKVLKFTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEKNNLNHDPEDFDFTPYGRHIESR-TNHTSNTPGSG-VTSGSVGNMDSTTASRHNSS-GSTGSNGTHPESCSPSSIPYSPTHSLNNYMPPSMAFSTASTTTAGFMPSGASSFSEYNSFTHFDPHMDNPPNANVLDVPPNDF 588
            PN + P+ +  +  + +P S   +   S  +KFRY    +  VQ+ S               T +SA+SSREGTP P     +E    APN+DISKVQ KE           +N +     S+  + V  + G S    +AP  S+ QQ       +  ++A   RG+    P+    P   P NS  D S+               +VKIGRRPAHLPKVLKF D TLP GW RKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLK FFEKNNL +D E FDFTPYG+HI++    H S+T   G   SGS G+M S ++  H          G HP           P    + YMPP  ++                          F+P M++PPNAN  ++P N  
Sbjct:  276 PNPTRPTFSYPSPQSSNPISPASVGDISRPDKFRY-QNTSKPVQNPSPGE-----------STCNSAISSREGTPGPRLWTGEEMTGLAPNIDISKVQVKEETVPRIYDSNDYNRRPSINLSYPATPVRSSPGESYPTYSAPYHSMPQQ-VPMPQRSVTAMAGQERGY---RPSVGRPPIVMPGNS--DGSVPHS------------NVKIGRRPAHLPKVLKFEDPTLPHGWQRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKHFFEKNNLQYDAEQFDFTPYGKHIDNAPQRHLSSTSSEGNRLSGSPGSMHSPSSGYHGPGIQEFMPPGNHP-----------PMAHHHAYMPPVPSYE-------------------------FNPMMESPPNANAREIPQNQI 621
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Match: gi|159163105|pdb|1UB1|A (Chain A, Solution Structure Of The Matrix Attachment Region-Binding Domain Of Chicken Mecp2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.061e-13
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRHIESRTNH-------TSNTPGSGVTSG 489
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR   SR          +  +PGSG   G
Sbjct:   33 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQRPPKKAKSPKSPGSGRGRG 127
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Match: gi|1331752003|gb|PNI12003.1| (LOW QUALITY PROTEIN: MECP2 isoform 16 [Pan troglodytes] >gi|1331861005|gb|PNJ09463.1| LOW QUALITY PROTEIN: MECP2 isoform 9 [Pongo abelii])

HSP 1 Score: 78.9518 bits (193), Expect = 2.638e-13
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRH 470
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR 
Sbjct:   91 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRE 159
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Match: gi|344235976|gb|EGV92079.1| (Methyl-CpG-binding protein 2 [Cricetulus griseus])

HSP 1 Score: 79.337 bits (194), Expect = 3.776e-13
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRHIESRTNH 477
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR   SR   
Sbjct:   95 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQ 170
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Match: gi|944353332|ref|XP_014379348.1| (PREDICTED: methyl-CpG-binding protein 2, partial [Alligator sinensis])

HSP 1 Score: 82.4185 bits (202), Expect = 4.140e-13
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRHIESRTNH 477
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR   SR  H
Sbjct:    2 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREH 77
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Match: gi|927147967|ref|XP_013915177.1| (PREDICTED: methyl-CpG-binding protein 2 [Thamnophis sirtalis])

HSP 1 Score: 83.5741 bits (205), Expect = 4.647e-13
Identity = 52/135 (38.52%), Postives = 65/135 (48.15%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRHIESRTNHTSNTPGSGVTSGSVGNMDSTTASRHNSSGSTGSNGTHPESCSPSSIPYSPTHSLNNYMP 536
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR   SR             S   G        R   SGST S GT  E      +    +  L   MP
Sbjct:  130 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKTKAPKSPGTGR----GRGRPKGSGSTKSRGTASEGVQVKRVIEKSSGKLLVKMP 260
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Match: gi|1113763984|ref|XP_019346490.1| (PREDICTED: methyl-CpG-binding protein 2 [Alligator mississippiensis])

HSP 1 Score: 82.8037 bits (203), Expect = 5.354e-13
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRHIESRTNH 477
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR   SR  H
Sbjct:    2 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREH 77
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Match: gi|1325278661|ref|XP_023323972.1| (uncharacterized protein LOC111698000 isoform X1 [Eurytemora affinis] >gi|1325278663|ref|XP_023323974.1| uncharacterized protein LOC111698000 isoform X1 [Eurytemora affinis])

HSP 1 Score: 84.7297 bits (208), Expect = 5.710e-13
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 0 
Query:  392 RRPAHLPKVLKFTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK---NNLNHDPEDFDFTPYGRH 470
            R+P    +     D+TLPPGW RK+ QRK G  AGR++V+I  P G +F SR +LK FFEK   + LN  P+DFDF+ +GR+
Sbjct:  812 RQPMDPNRTPLMEDETLPPGWHRKVSQRKSGASAGRYEVFIIGPSGKRFRSRNELKSFFEKTGESTLN--PDDFDFSTFGRN 891
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Match: gi|1325278665|ref|XP_023323975.1| (uncharacterized protein LOC111698000 isoform X2 [Eurytemora affinis])

HSP 1 Score: 84.7297 bits (208), Expect = 5.905e-13
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0 
Query:  392 RRPAHLPKVLKFTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEKN-NLNHDPEDFDFTPYGRH 470
            R+P    +     D+TLPPGW RK+ QRK G  AGR++V+I  P G +F SR +LK FFEK      +P+DFDF+ +GR+
Sbjct:  807 RQPMDPNRTPLMEDETLPPGWHRKVSQRKSGASAGRYEVFIIGPSGKRFRSRNELKSFFEKTGESTLNPDDFDFSTFGRN 886
[Close]
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Match: gi|305861203|gb|ADM72855.1| (mutant methyl CpG binding protein 2 [Homo sapiens] >gi|1331752002|gb|PNI12002.1| MECP2 isoform 15, partial [Pan troglodytes] >gi|1331861002|gb|PNJ09460.1| MECP2 isoform 5, partial [Pongo abelii])

HSP 1 Score: 80.1073 bits (196), Expect = 7.657e-13
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0 
Query:  403 FTDKTLPPGWIRKLKQRKHGKQAGRWDVYIYSPCGVKFASRKKLKGFFEK-NNLNHDPEDFDFTPYGRHIESRTNH 477
            + D TLP GW RKLKQRK G+ AG++DVY+ +P G  F S+ +L  +FEK  + + DP DFDFT  GR   SR   
Sbjct:   95 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQ 170
The following BLAST results are available for this feature:
BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAG000000071323.144e-6842.23supercontig:LSalAtl2s:LSalAtl2s402:19657:23163:-1 ... [more]
EMLSAG000000049952.458e-1647.89supercontig:LSalAtl2s:LSalAtl2s260:324794:336233:-... [more]
EMLSAG000000057524.677e-839.66supercontig:LSalAtl2s:LSalAtl2s309:840524:845329:-... [more]
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BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
gi|12585281|sp|Q9Z2D6.1|MECP2_MOUSE1.519e-1450.00RecName: Full=Methyl-CpG-binding protein 2; Short=... [more]
gi|1708973|sp|P51608.1|MECP2_HUMAN1.657e-1450.00RecName: Full=Methyl-CpG-binding protein 2; Short=... [more]
gi|266521|sp|Q00566.1|MECP2_RAT1.712e-1450.00RecName: Full=Methyl-CpG-binding protein 2; Short=... [more]
gi|50401118|sp|Q95LG8.1|MECP2_MACFA1.826e-1450.00RecName: Full=Methyl-CpG-binding protein 2; Short=... [more]
gi|50400819|sp|O95243.1|MBD4_HUMAN3.855e-1048.68RecName: Full=Methyl-CpG-binding domain protein 4;... [more]
gi|50401208|sp|Q9Z2D7.1|MBD4_MOUSE3.843e-849.18RecName: Full=Methyl-CpG-binding domain protein 4;... [more]
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BLAST of achain solution structure of the matrix attachment region-binding domain of chicken mecp2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325280675|ref|XP_023325004.1|4.020e-4938.59uncharacterized protein LOC111698797 [Eurytemora a... [more]
gi|159163105|pdb|1UB1|A1.061e-1345.26Chain A, Solution Structure Of The Matrix Attachme... [more]
gi|1331752003|gb|PNI12003.1|2.638e-1352.17LOW QUALITY PROTEIN: MECP2 isoform 16 [Pan troglod... [more]
gi|344235976|gb|EGV92079.1|3.776e-1350.00Methyl-CpG-binding protein 2 [Cricetulus griseus][more]
gi|944353332|ref|XP_014379348.1|4.140e-1351.32PREDICTED: methyl-CpG-binding protein 2, partial [... [more]
gi|927147967|ref|XP_013915177.1|4.647e-1338.52PREDICTED: methyl-CpG-binding protein 2 [Thamnophi... [more]
gi|1113763984|ref|XP_019346490.1|5.354e-1351.32PREDICTED: methyl-CpG-binding protein 2 [Alligator... [more]
gi|1325278661|ref|XP_023323972.1|5.710e-1348.78uncharacterized protein LOC111698000 isoform X1 [E... [more]
gi|1325278665|ref|XP_023323975.1|5.905e-1347.50uncharacterized protein LOC111698000 isoform X2 [E... [more]
gi|305861203|gb|ADM72855.1|7.657e-1350.00mutant methyl CpG binding protein 2 [Homo sapiens]... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold51_size454968supercontigscaffold51_size454968:155468..157759 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold51_size454968-processed-gene-1.4-mRNA-1snap_masked-scaffold51_size454968-processed-gene-1.4-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold51_size454968:155468..157759+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold51_size454968-processed-gene-1.4 ID=snap_masked-scaffold51_size454968-processed-gene-1.4|Name=achain solution structure of the matrix attachment region-binding domain of chicken mecp2|organism=Tigriopus kingsejongensis|type=gene|length=2292bp|location=Sequence derived from alignment at scaffold51_size454968:155468..157759+ (Tigriopus kingsejongensis)
ATGCAACCGGCCACCGATTATTTGAGGCCTTACATTCATTACCCCGCTAC
GGCAGCTGCTTTCTACCACTCGGCCGCTAGTATGGCCCCCGGGGCCACCA
CCCGTCTGGATCAGACTGGACTTGGGGATCGAACAGTGCCTTTTCCCTCC
ATCAACAACCTAAACAATTTGGCCACAGGGCAACACCCGATTGGCACCAA
CTACTCACACAGGTACGATTCGGCAGCGGCCTTGTCAGGGCATCCCCAGA
GTTTGTACTCGTCATACTCGGCATTCGAATCTCCCTACGCCAACCAGCTC
CCTCCCACCTCCCACATTCCTCTAGGCGGTGCAGCCGACTACGTCCAACA
CCCCCAACAGCATCACAGCACTGCTCAAGCCCAAAATCAACAGCAGCAAC
AGAGGTATTTCCTAGCCCGACCCCAGCCCACGCGGCTGGTGCCGGCCTCA
GCTGTCTCAAGCGATATTGTCAGTCCCCAGCCTCCCCGATCTCAGACCTC
GCCCTACACCCTCGCTGCTGCCAAGGTGGACAACATCCTCAACAACAACA
ACAGCAGTGGCAGTCCCCTGAACCATCCCAATGCCTCCTCGCCCTCGACC
ACGGCGGATACCAATGGCAACCTCTCCCCCAGCTCCTCGGAGCGGATCGA
CACCAACTCAACCCACAACAAGTTTAGGTACCCGAGTGGGGCCAATAACT
CAGTACAAAGCTCATCTGCCTCCTCGCCACCCCATCTGGACGGACGGGGA
GGAAGGGCCGTTACCCCCTCATCGGCCTTGTCCTCCCGGGAGGGCACGCC
CATGCCCAGCACCAACCACCGGGATGAGCCTCCTGCCCCCAATGTGGACA
TTTCCAAGGTTCAGGCCAAGGAACTCCAACAACATAACAACAAGCAACAA
CAAATGCAAAGTTTTATGCAGTCCCAAGTCACCGGAGCTGGCAGTTCGGC
TGCTGTCGTAGCCGCTCCTTCCCTTGCTCAACAAAATTTCCATTTTGGAA
TGGGAGCGAGCCCTTCGATAGCACCTTCGTCTCGGGGGTTTGTCGGCTCT
TCCCCGACTTCTTCATACTTCCCTTCCTCAGCTCCTGTGAATAGCATGTT
GGATAGTTCCATTGCTCAAAGGCCACCAAAGCAAAGACCTCAAAGAGAGG
CCTCCCTCCATGTCAAAATTGGACGCAGACCGGCTCACCTCCCAAAAGTG
TTGAAGTTCACCGACAAGACCTTGCCCCCAGGTTGGATCCGCAAGCTCAA
ACAGAGGAAACATGGGAAGCAGGCGGGACGATGGGACGTCTACATCTACA
GCCCGTGCGGGGTCAAGTTCGCCTCGCGCAAGAAGCTCAAGGGGTTCTTT
GAAAAGAACAACCTCAACCACGATCCGGAAGACTTTGACTTCACCCCCTA
TGGGCGACACATTGAATCAAGGACCAATCACACAAGCAATACCCCGGGCT
CAGGGGTGACGAGTGGAAGCGTCGGAAATATGGACTCCACCACGGCCAGT
CGGCACAATTCCTCGGGGAGCACGGGCAGTAATGGGACCCATCCCGAAAG
CTGCAGCCCCTCGTCGATTCCCTACTCTCCCACGCACTCGCTGAACAACT
ACATGCCACCCTCGATGGCCTTCAGCACTGCCTCGACCACCACAGCCGGG
TTCATGCCCTCCGGGGCCAGCTCATTCTCCGAGTACAACTCCTTCACCCA
CTTTGACCCCCACATGGACAATCCCCCCAATGCCAATGTGCTCGATGTCC
CACCCAACGACTTCAACCCTCTGACGGCCGGGTCGACAATGCCCTACGCT
CACCTGGGGAGGGGCCACCACCATCCGATCATCAACAAGGCTGGGACCAT
GGGCTCAGAGTTTTTCCCCTCGTCGGACATGGCCGAGCTGATTGGGAGCT
CTGCCAGTGACCTCCACAATGGATACAGCAGCGATCTCAAGATGGGACTC
CAAGGCATCGGTGGGGTCTCGGTCGGGCTATCCATCAAGGACGAGCCGGA
CATGGGCGATAAATCGGGCAGTGACAAGATGCACACGTGCCAGTCTTCAC
AGATGGTCTCGTCGGCCTCCTCCGGCTGCTACAGCACTGCCATCTCTGCC
TCGCCCACCTCTGTGATGGCCAATGTTTCCCACATGGTGAGCCAGTCATC
CTCAGCGGGCAGCCATTGTTCCCAAGGGGGTGGGACGGTCAGTCATGAGA
ATGCTTCTGAAAAGACATTCAGTCTGGGACGCACAATGAACATGCTCCAT
GGAGGGCAGGAGGGCTTCGAGGATCCCTACTTCTACGATTAA
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Synonyms
The feature 'achain solution structure of the matrix attachment region-binding domain of chicken mecp2' has the following synonyms
Synonym
Tk05761
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