u6 snrna-associated sm-like protein lsm6, snap_masked-scaffold548_size139981-processed-gene-0.4 (gene) Tigriopus kingsejongensis

Overview


Name	u6 snrna-associated sm-like protein lsm6
Unique Name	snap_masked-scaffold548_size139981-processed-gene-0.4
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. L. salmonis genes
Match: EMLSAG00000011554 (supercontig:LSalAtl2s:LSalAtl2s7:708980:710064:-1 gene:EMLSAG00000011554 transcript:EMLSAT00000011554 description:"maker-LSalAtl2s7-augustus-gene-7.22")

HSP 1 Score: 83.1889 bits (204), Expect = 1.866e-21
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 0

Query:    5 QNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVL 70
            Q P +FLK +LGRPV+VKLNSG DYRG+L+ LDG+MNIALEQTEEY  G     Y  ++L G +V+
Sbjct:    8 QKPKDFLKQILGRPVLVKLNSGSDYRGVLSCLDGHMNIALEQTEEYSQGAESRLYLGSYL-GKDVI 72

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. L. salmonis genes
Match: EMLSAG00000003825 (supercontig:LSalAtl2s:LSalAtl2s206:256317:256577:-1 gene:EMLSAG00000003825 transcript:EMLSAT00000003825 description:"snap-LSalAtl2s206-processed-gene-2.31")

HSP 1 Score: 75.0998 bits (183), Expect = 4.941e-20
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 0

Query:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYI 72
            MA   NP  FL  L G+ V+VKL  G +Y+G L S DGYMN+ L  TEEY++G      G+  +R NNVLYI
Sbjct:    1 MAMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGEVLVRCNNVLYI 72

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. L. salmonis genes
Match: EMLSAG00000011451 (supercontig:LSalAtl2s:LSalAtl2s790:153888:154192:-1 gene:EMLSAG00000011451 transcript:EMLSAT00000011451 description:"maker-LSalAtl2s790-snap-gene-1.50")

HSP 1 Score: 44.669 bits (104), Expect = 4.208e-8
Identity = 24/76 (31.58%), Postives = 42/76 (55.26%), Query Frame = 0

Query:    2 ATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRR 77
            +T+ +P E LK  + + V +KLN+  +  GIL   D +MN+ LE+  E      +N  G   +RGN+++ +  + R
Sbjct:    3 STKAHPPE-LKKFMDKRVQLKLNASRNMEGILRGYDPFMNLVLEEGIETTKQGHRNPVGTIVIRGNSIVMLEAKDR 77

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Match: gi|61227727|sp|P62312.1|LSM6_HUMAN (RecName: Full=U6 snRNA-associated Sm-like protein LSm6 >gi|61227728|sp|P62313.1|LSM6_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm6)

HSP 1 Score: 140.198 bits (352), Expect = 2.262e-44
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 0

Query:    4 RQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRR 78
            +Q P++FLK ++GRPVVVKLNSGVDYRG+LA LDGYMNIALEQTEEYVNGQLKNKYGDAF+RGNNVLYISTQ+RR
Sbjct:    5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 79

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Match: gi|75264577|sp|Q9M1Z3.1|LSM6A_ARATH (RecName: Full=Sm-like protein LSM6A; Short=AtLSM6A; AltName: Full=U6 snRNA-associated Sm-like protein LSM6A)

HSP 1 Score: 129.028 bits (323), Expect = 8.954e-40
Identity = 60/73 (82.19%), Postives = 65/73 (89.04%), Query Frame = 0

Query:    2 ATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYIST 74
             T + P +FLKS+ GRPVVVKLNSGVDYRG L  LDGYMNIA+EQTEEYVNGQLKNKYGDAF+RGNNVLYIST
Sbjct:   10 GTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST 82

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Match: gi|75270390|sp|O22823.1|LSM6B_ARATH (RecName: Full=Sm-like protein LSM36B; Short=AtLSM6B; AltName: Full=U6 snRNA-associated Sm-like protein LSM6B)

HSP 1 Score: 128.642 bits (322), Expect = 1.191e-39
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 0

Query:    2 ATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQR 76
             T + P +FLKS+ G+PVVVKLNSGVDYRGIL  LDGYMNIA+EQTEEYVNGQLKN YGDAF+RGNNVLYIST +
Sbjct:   10 GTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTK 84

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Match: gi|74857296|sp|Q552U1.1|LSM6_DICDI (RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm6)

HSP 1 Score: 109.768 bits (273), Expect = 3.931e-32
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 0

Query:   10 FLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRR 78
            F K  +GRPVVVKLN+GV+YRGIL  +DG MNI +EQTEEY+NGQLK KYGD FLRGNNVLYIS Q R+
Sbjct:   20 FFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNVLYISAQPRK 88

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Match: gi|189028838|sp|B0DWN3.1|LSM6_LACBS (RecName: Full=U6 snRNA-associated Sm-like protein LSm6)

HSP 1 Score: 108.997 bits (271), Expect = 8.934e-32
Identity = 48/68 (70.59%), Postives = 61/68 (89.71%), Query Frame = 0

Query:    6 NPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYIS 73
            +P +FLK ++G+ V+V+L SGVDYRG+L+ LDGYMNIALEQTEE+VNG + N+YGDAF+RGNNVLYIS
Sbjct:   27 SPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIRGNNVLYIS 94

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Match: gi|189028854|sp|Q4PG71.2|LSM6_USTMA (RecName: Full=U6 snRNA-associated Sm-like protein LSm6)

HSP 1 Score: 105.916 bits (263), Expect = 1.130e-30
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 0

Query:    2 ATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRR 77
            A   +PN+FLK ++G+ V V+LNSG+DYRG+L+ LDGYMNIALEQT EYV+G  KN YGDAF+RGNNV+YI+   +
Sbjct:   10 AKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGDAFIRGNNVMYITALEK 85

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Match: gi|10720076|sp|Q9UUI1.1|LSM6_SCHPO (RecName: Full=U6 snRNA-associated Sm-like protein LSm6)

HSP 1 Score: 105.145 bits (261), Expect = 1.544e-30
Identity = 46/70 (65.71%), Postives = 61/70 (87.14%), Query Frame = 0

Query:    5 QNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYIST 74
             +PNEFL  ++G+ V+++L+SGVDY+GIL+ LDGYMN+ALE+TEEYVNG+  N YGDAF+RGNNVLY+S 
Sbjct:    3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSA 72

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Match: gi|189028860|sp|Q4WNI0.2|LSM6_ASPFU (RecName: Full=U6 snRNA-associated Sm-like protein LSm6)

HSP 1 Score: 103.219 bits (256), Expect = 8.998e-30
Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 0

Query:    5 QNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQ 75
            ++P+ FL  ++G PV VKLNSGV Y+G L S+DGYMNIALE++EE+V+G+LK  YGDAF+RGNNVLYIS Q
Sbjct:   10 RDPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIRGNNVLYISAQ 80

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Match: gi|189028850|sp|A1DM27.2|LSM6_NEOFI (RecName: Full=U6 snRNA-associated Sm-like protein LSm6)

HSP 1 Score: 103.219 bits (256), Expect = 9.505e-30
Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 0

Query:    5 QNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQ 75
            ++P+ FL  ++G PV VKLNSGV YRG L S+DGYMNIALE++EE+V+G+L+  YGDAF+RGNNVLYIS Q
Sbjct:   10 RDPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIRGNNVLYISAQ 80

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Match: gi|189028837|sp|A6R363.1|LSM6_AJECN (RecName: Full=U6 snRNA-associated Sm-like protein LSm6)

HSP 1 Score: 102.449 bits (254), Expect = 2.094e-29
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0

Query:    5 QNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQ 75
            ++P+ FL  + G PV VKLNSGV Y+G L S+DGYMNIALE+TEEYV+G+L+  YGDAF+RGNNVLYIS  
Sbjct:   10 KDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVRGNNVLYISAD 80

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Match: gi|762085544|ref|XP_011425089.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Crassostrea gigas] >gi|762163751|ref|XP_011420171.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Crassostrea gigas] >gi|762163753|ref|XP_011420172.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Crassostrea gigas] >gi|405968751|gb|EKC33791.1| U6 snRNA-associated Sm-like protein LSm6 [Crassostrea gigas])

HSP 1 Score: 145.591 bits (366), Expect = 4.761e-44
Identity = 67/79 (84.81%), Postives = 75/79 (94.94%), Query Frame = 0

Query:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRRA 79
            M+ +Q P+EFLK ++GRPVVVKLNSGVDYRG+LA LDGYMNIALEQTEEYVNGQLKNKYGDAF+RGNNVLYISTQ+RRA
Sbjct:    1 MSRKQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRA 79

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Match: gi|1009568015|ref|XP_015916346.1| (U6 snRNA-associated Sm-like protein LSm6 [Parasteatoda tepidariorum] >gi|1009568018|ref|XP_015916347.1| U6 snRNA-associated Sm-like protein LSm6 [Parasteatoda tepidariorum] >gi|1009568021|ref|XP_015916348.1| U6 snRNA-associated Sm-like protein LSm6 [Parasteatoda tepidariorum] >gi|1009568024|ref|XP_015916349.1| U6 snRNA-associated Sm-like protein LSm6 [Parasteatoda tepidariorum] >gi|1009568027|ref|XP_015916350.1| U6 snRNA-associated Sm-like protein LSm6 [Parasteatoda tepidariorum] >gi|1009568029|ref|XP_015916351.1| U6 snRNA-associated Sm-like protein LSm6 [Parasteatoda tepidariorum])

HSP 1 Score: 144.821 bits (364), Expect = 9.936e-44
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 0

Query:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRR 78
            M+ RQ P+EFLK ++GRPVVVKLNSGVDYRG+LA LDGYMNIALEQTEEYVNGQLKNKYGDAF+RGNNVLYISTQ+RR
Sbjct:    1 MSRRQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 78

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Match: gi|957823317|ref|XP_014682041.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Priapulus caudatus])

HSP 1 Score: 144.05 bits (362), Expect = 1.818e-43
Identity = 66/77 (85.71%), Postives = 74/77 (96.10%), Query Frame = 0

Query:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRR 77
            M++RQ P+EFLK ++GRPVVVKLNSGVDYRG+LA LDGYMNIALEQTEEYVNGQLKNKYGDAF+RGNNVLYISTQ+R
Sbjct:    1 MSSRQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKR 77

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Match: gi|926633278|ref|XP_013782437.1| (U6 snRNA-associated Sm-like protein LSm6 [Limulus polyphemus] >gi|926633280|ref|XP_013782438.1| U6 snRNA-associated Sm-like protein LSm6 [Limulus polyphemus] >gi|1207937963|ref|XP_021358522.1| U6 snRNA-associated Sm-like protein LSm6 [Mizuhopecten yessoensis] >gi|1207989081|ref|XP_021344353.1| U6 snRNA-associated Sm-like protein LSm6 [Mizuhopecten yessoensis] >gi|1238873267|ref|XP_022250466.1| U6 snRNA-associated Sm-like protein LSm6 [Limulus polyphemus])

HSP 1 Score: 144.05 bits (362), Expect = 2.445e-43
Identity = 66/79 (83.54%), Postives = 74/79 (93.67%), Query Frame = 0

Query:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRRA 79
            M+ +Q P+EFLK ++GRPVVVKLNSGVDYRG+LA LDGYMNIALEQTEEYVNGQLKNKYGDAF+RGNNVLYISTQ+RR 
Sbjct:    1 MSRKQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRV 79

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Match: gi|675855214|ref|XP_009013167.1| (hypothetical protein HELRODRAFT_156575 [Helobdella robusta] >gi|555705912|gb|ESO09145.1| hypothetical protein HELRODRAFT_156575 [Helobdella robusta])

HSP 1 Score: 142.895 bits (359), Expect = 5.694e-43
Identity = 65/78 (83.33%), Postives = 74/78 (94.87%), Query Frame = 0

Query:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRR 78
            M+ +Q P+EFLK ++GRPVVVKLNSGVDYRG+LA LDGYMNIALEQTEEYV+GQLKNKYGDAF+RGNNVLYISTQ+RR
Sbjct:    1 MSKKQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVSGQLKNKYGDAFIRGNNVLYISTQKRR 78

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Match: gi|1325307822|ref|XP_023335529.1| (U6 snRNA-associated Sm-like protein LSm6 [Eurytemora affinis])

HSP 1 Score: 143.28 bits (360), Expect = 5.934e-43
Identity = 66/75 (88.00%), Postives = 72/75 (96.00%), Query Frame = 0

Query:    4 RQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRR 78
            RQ+PNEFLK ++GRPVVVKLNSGVDYRG+L  LDGYMNIALEQTEEYVNGQLKNKYGDAF+RGNNVLYISTQ+RR
Sbjct:   19 RQDPNEFLKQIIGRPVVVKLNSGVDYRGVLTCLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRR 93

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Match: gi|676473061|ref|XP_009059694.1| (hypothetical protein LOTGIDRAFT_164944 [Lottia gigantea] >gi|556100988|gb|ESO89640.1| hypothetical protein LOTGIDRAFT_164944 [Lottia gigantea])

HSP 1 Score: 142.51 bits (358), Expect = 8.181e-43
Identity = 65/79 (82.28%), Postives = 74/79 (93.67%), Query Frame = 0

Query:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRRA 79
            M+ +Q P++FLK ++GRPVVVKLNSGVDYRG+LA LDGYMNIALEQTEEYVNGQLKNKYGDAF+RGNNVLYISTQ+RR 
Sbjct:    1 MSNKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRG 79

[Close]

BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Match: gi|1067092988|ref|XP_018008332.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Hyalella azteca])

HSP 1 Score: 142.51 bits (358), Expect = 9.931e-43
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 0

Query:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRRA 79
            M  RQ PNEFL+ ++GRPVVVKLNSGVDYRG+LA LDGYMNIALEQTEEY+NGQLKNKYGDAF+RGNNVLYISTQ+RR 
Sbjct:    1 MNRRQTPNEFLQQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYMNGQLKNKYGDAFIRGNNVLYISTQKRRV 79

[Close]

BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Match: gi|1242781436|ref|XP_022330558.1| (U6 snRNA-associated Sm-like protein LSm6 [Crassostrea virginica] >gi|1242781932|ref|XP_022330823.1| U6 snRNA-associated Sm-like protein LSm6 [Crassostrea virginica])

HSP 1 Score: 142.124 bits (357), Expect = 1.053e-42
Identity = 65/79 (82.28%), Postives = 73/79 (92.41%), Query Frame = 0

Query:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRRA 79
            M+ +Q P+EFLK ++GRPVVVKLNSGVDYRG+LA LDGYMNIALEQTEEYVNGQLKNKYGDAF+RGNNVLYIST +RR 
Sbjct:    1 MSRKQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTHKRRV 79

[Close]

BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Match: gi|321461493|gb|EFX72525.1| (hypothetical protein DAPPUDRAFT_59069 [Daphnia pulex] >gi|1022772252|gb|KZS16437.1| U6 snRNA-associated Sm protein LSm6 [Daphnia magna])

HSP 1 Score: 142.124 bits (357), Expect = 1.448e-42
Identity = 65/78 (83.33%), Postives = 73/78 (93.59%), Query Frame = 0

Query:    1 MATRQNPNEFLKSLLGRPVVVKLNSGVDYRGILASLDGYMNIALEQTEEYVNGQLKNKYGDAFLRGNNVLYISTQRRR 78
            M+ RQ PNEFLK ++GRPVVVKLN+GVDYRG+LA LDGYMNIALEQTEEY NGQLKNKYGDAF+RGNNVL+ISTQ+RR
Sbjct:    1 MSARQTPNEFLKQIIGRPVVVKLNNGVDYRGVLACLDGYMNIALEQTEEYSNGQLKNKYGDAFIRGNNVLFISTQKRR 78

The following BLAST results are available for this feature:

BLAST of u6 snrna-associated sm-like protein lsm6 vs. L. salmonis genes
BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr

BLAST of u6 snrna-associated sm-like protein lsm6 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 3


Match Name	E-value	Identity	Description
EMLSAG00000011554	1.866e-21	60.61	supercontig:LSalAtl2s:LSalAtl2s7:708980:710064:-1 ...	[more]
EMLSAG00000003825	4.941e-20	50.00	supercontig:LSalAtl2s:LSalAtl2s206:256317:256577:-...	[more]
EMLSAG00000011451	4.208e-8	31.58	supercontig:LSalAtl2s:LSalAtl2s790:153888:154192:-...	[more]

BLAST of u6 snrna-associated sm-like protein lsm6 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|61227727\|sp\|P62312.1\|LSM6_HUMAN	2.262e-44	85.33	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|75264577\|sp\|Q9M1Z3.1\|LSM6A_ARATH	8.954e-40	82.19	RecName: Full=Sm-like protein LSM6A; Short=AtLSM6A...	[more]
gi\|75270390\|sp\|O22823.1\|LSM6B_ARATH	1.191e-39	78.67	RecName: Full=Sm-like protein LSM36B; Short=AtLSM6...	[more]
gi\|74857296\|sp\|Q552U1.1\|LSM6_DICDI	3.931e-32	73.91	RecName: Full=Probable U6 snRNA-associated Sm-like...	[more]
gi\|189028838\|sp\|B0DWN3.1\|LSM6_LACBS	8.934e-32	70.59	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|189028854\|sp\|Q4PG71.2\|LSM6_USTMA	1.130e-30	63.16	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|10720076\|sp\|Q9UUI1.1\|LSM6_SCHPO	1.544e-30	65.71	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|189028860\|sp\|Q4WNI0.2\|LSM6_ASPFU	8.998e-30	66.20	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|189028850\|sp\|A1DM27.2\|LSM6_NEOFI	9.505e-30	66.20	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]
gi\|189028837\|sp\|A6R363.1\|LSM6_AJECN	2.094e-29	66.20	RecName: Full=U6 snRNA-associated Sm-like protein ...	[more]

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BLAST of u6 snrna-associated sm-like protein lsm6 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|762085544\|ref\|XP_011425089.1\|	4.761e-44	84.81	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]
gi\|1009568015\|ref\|XP_015916346.1\|	9.936e-44	85.90	U6 snRNA-associated Sm-like protein LSm6 [Parastea...	[more]
gi\|957823317\|ref\|XP_014682041.1\|	1.818e-43	85.71	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]
gi\|926633278\|ref\|XP_013782437.1\|	2.445e-43	83.54	U6 snRNA-associated Sm-like protein LSm6 [Limulus ...	[more]
gi\|675855214\|ref\|XP_009013167.1\|	5.694e-43	83.33	hypothetical protein HELRODRAFT_156575 [Helobdella...	[more]
gi\|1325307822\|ref\|XP_023335529.1\|	5.934e-43	88.00	U6 snRNA-associated Sm-like protein LSm6 [Eurytemo...	[more]
gi\|676473061\|ref\|XP_009059694.1\|	8.181e-43	82.28	hypothetical protein LOTGIDRAFT_164944 [Lottia gig...	[more]
gi\|1067092988\|ref\|XP_018008332.1\|	9.931e-43	83.54	PREDICTED: U6 snRNA-associated Sm-like protein LSm...	[more]
gi\|1242781436\|ref\|XP_022330558.1\|	1.053e-42	82.28	U6 snRNA-associated Sm-like protein LSm6 [Crassost...	[more]
gi\|321461493\|gb\|EFX72525.1\|	1.448e-42	83.33	hypothetical protein DAPPUDRAFT_59069 [Daphnia pul...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold548_size139981	supercontig	scaffold548_size139981:56293..56532 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold548_size139981-processed-gene-0.4-mRNA-1	snap_masked-scaffold548_size139981-processed-gene-0.4-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold548_size139981:56293..56532+

gene from alignment at scaffold548_size139981:56293..56532+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold548_size139981-processed-gene-0.4 ID=snap_masked-scaffold548_size139981-processed-gene-0.4|Name=u6 snrna-associated sm-like protein lsm6|organism=Tigriopus kingsejongensis|type=gene|length=240bp|location=Sequence derived from alignment at scaffold548_size139981:56293..56532+ (Tigriopus kingsejongensis)
ATGGCCACCCGGCAGAACCCCAACGAGTTCCTGAAAAGCCTCTTGGGACG
GCCTGTGGTCGTGAAGTTGAACTCCGGCGTGGATTACCGCGGCATCTTGG
CCTCGCTGGACGGCTACATGAACATTGCGCTGGAGCAAACCGAGGAGTAC
GTGAACGGACAACTGAAGAACAAGTACGGCGACGCCTTCCTCCGCGGCAA
CAACGTGCTCTACATCTCGACCCAACGGCGCCGCGCCTAA

Synonyms

The feature 'u6 snrna-associated sm-like protein lsm6' has the following synonyms


Synonym
Tk08558

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