nuclear hormone receptor, snap_masked-scaffold58_size443543-processed-gene-3.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000012486 (supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1 gene:EMLSAG00000012486 transcript:EMLSAT00000012486 description:"maker-LSalAtl2s91-snap-gene-4.8") HSP 1 Score: 141.354 bits (355), Expect = 3.318e-41 Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 73 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR Sbjct: 224 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 286
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000009941 (supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-1 gene:EMLSAG00000009941 transcript:EMLSAT00000009941 description:"maker-LSalAtl2s649-snap-gene-4.11") HSP 1 Score: 100.138 bits (248), Expect = 2.960e-27 Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 0 Query: 17 RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 +HYG +CEGCK FFKRS+R+ L YQCRG+K+C V +HHRN+CQ+CRL+KC MGMR + Sbjct: 93 KHYGQFTCEGCKSFFKRSVRRNLTYQCRGSKNCPVDQHHRNQCQHCRLKKCFKMGMRRE 151
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000009940 (supercontig:LSalAtl2s:LSalAtl2s649:353131:422335:-1 gene:EMLSAG00000009940 transcript:EMLSAT00000009940 description:"maker-LSalAtl2s649-augustus-gene-4.7") HSP 1 Score: 100.138 bits (248), Expect = 8.013e-27 Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GD+ +HYG +CEGCK FFKRS+R+ L YQCRG++ C + +HHRN+CQ+CRL+KC+ MGMR + Sbjct: 438 GDKSSGKHYGQFTCEGCKSFFKRSVRRALTYQCRGSRSCPIDQHHRNQCQHCRLKKCIKMGMRKE 502
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5") HSP 1 Score: 96.2857 bits (238), Expect = 1.525e-25 Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR++RK+L Y CR N+DC + K RNRCQYCR KCL GM+ + Sbjct: 95 GDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKRE 159
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000009969 (supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-1 gene:EMLSAG00000009969 transcript:EMLSAT00000009969 description:"maker-LSalAtl2s651-augustus-gene-2.5") HSP 1 Score: 93.5893 bits (231), Expect = 1.360e-24 Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 0 Query: 5 ILSCLSLTRGDRRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 IL + + +HYG +CEGCK FFKR +R+ L +QCR K C V +HHRN+CQ+CR +KCL MGM+ + Sbjct: 73 ILCVVCGDKSSGKHYGQFTCEGCKSFFKRCVRRSLTFQCRSKKSCPVDQHHRNQCQHCRFKKCLNMGMKKE 143
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000000733 (supercontig:LSalAtl2s:LSalAtl2s1117:84476:96586:1 gene:EMLSAG00000000733 transcript:EMLSAT00000000733 description:"maker-LSalAtl2s1117-snap-gene-1.23") HSP 1 Score: 88.9669 bits (219), Expect = 8.636e-23 Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0 Query: 18 HYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 HYG I+CEGCKGFF+RS + YQC K+C V + +RNRCQ+CRLQKCLA+GM D Sbjct: 58 HYGVITCEGCKGFFRRSQSSVVNYQCPRQKNCIVDRVNRNRCQFCRLQKCLALGMSRD 115
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0") HSP 1 Score: 88.1965 bits (217), Expect = 1.253e-22 Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0 Query: 9 LSLTRGDRR---HYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDC 76 L L GDR HY A++CEGCKGFF+RSI K Y C+ N DCE+ + R +CQ CRL+KC A GMR++C Sbjct: 172 LCLVCGDRASGYHYNALACEGCKGFFRRSITKNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAEC 242
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1") HSP 1 Score: 88.1965 bits (217), Expect = 1.397e-22 Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 0 Query: 17 RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGM 72 +HYG +CEGCKGFFKR+++K Y C +K+C V K RNRCQ+CR QKCLA+GM Sbjct: 419 QHYGVRTCEGCKGFFKRTVQKNAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGM 474
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13") HSP 1 Score: 87.4261 bits (215), Expect = 2.489e-22 Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 73 GDR +HYGA SC+GCKGFF+RS+RK+ Y CR N+ C V K RN C+YCRL+ C+ GM+ Sbjct: 155 GDRATGKHYGAASCDGCKGFFRRSVRKERVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMK 217
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53") HSP 1 Score: 87.4261 bits (215), Expect = 2.662e-22 Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0 Query: 13 RGDRRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGM 72 R HYG I+CEGCKGFFKR+++ + Y C + +CE+ K RNRCQYCR QKCL GM Sbjct: 289 RATGLHYGIITCEGCKGFFKRTVQNKRIYTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE (RecName: Full=Retinoic acid receptor RXR-beta-A; AltName: Full=Nuclear receptor subfamily 2 group B member 2-A; AltName: Full=Retinoid X receptor beta-A) HSP 1 Score: 104.375 bits (259), Expect = 5.470e-27 Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR++RK L Y CR NKDC V K RNRCQYCR QKCLAMGM+ + Sbjct: 129 GDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKRE 193
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|1350914|sp|P28705.2|RXRG_MOUSE (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 103.99 bits (258), Expect = 6.762e-27 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR+IRK L Y CR NKDC + K RNRCQYCR QKCL MGM+ + Sbjct: 143 GDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|81888393|sp|Q5BJR8.1|RXRG_RAT (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 103.99 bits (258), Expect = 7.258e-27 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR+IRK L Y CR NKDC + K RNRCQYCR QKCL MGM+ + Sbjct: 143 GDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|119367365|sp|Q0VC20.1|RXRG_BOVIN (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 103.99 bits (258), Expect = 7.790e-27 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR+IRK L Y CR NKDC + K RNRCQYCR QKCL MGM+ + Sbjct: 143 GDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|167016572|sp|Q0GFF6.2|RXRG_PIG (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 103.99 bits (258), Expect = 7.790e-27 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR+IRK L Y CR NKDC + K RNRCQYCR QKCL MGM+ + Sbjct: 143 GDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
BLAST of nuclear hormone receptor vs. nr
Match: gi|951536144|ref|XP_014471525.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X3 [Dinoponera quadriceps]) HSP 1 Score: 135.191 bits (339), Expect = 1.149e-35 Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 129 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 193
BLAST of nuclear hormone receptor vs. nr
Match: gi|1316138863|ref|XP_023211818.1| (nuclear receptor subfamily 2 group C member 1-A-like [Centruroides sculpturatus]) HSP 1 Score: 135.961 bits (341), Expect = 1.184e-35 Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GD+ RHYGAISCEGCKGFFKRSIRKQLGY CRGN+DCEVTKHHRNRCQYCRLQKCL+MGMR+D Sbjct: 128 LCVVCGDKASGRHYGAISCEGCKGFFKRSIRKQLGYACRGNRDCEVTKHHRNRCQYCRLQKCLSMGMRAD 197
BLAST of nuclear hormone receptor vs. nr
Match: gi|1070176762|ref|XP_018347783.1| (PREDICTED: nuclear receptor subfamily 2 group C member 1-like isoform X9 [Trachymyrmex septentrionalis] >gi|1070208320|ref|XP_018373202.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform X4 [Trachymyrmex cornetzi] >gi|1070208322|ref|XP_018373203.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform X4 [Trachymyrmex cornetzi] >gi|1070208324|ref|XP_018373204.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform X4 [Trachymyrmex cornetzi]) HSP 1 Score: 135.191 bits (339), Expect = 1.196e-35 Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 108 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 172
BLAST of nuclear hormone receptor vs. nr
Match: gi|749747361|ref|XP_011135801.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X6 [Harpegnathos saltator]) HSP 1 Score: 135.576 bits (340), Expect = 1.224e-35 Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K+CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 151 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKNCEVTKHHRNRCQYCRLQKCLAMGMRSD 215
BLAST of nuclear hormone receptor vs. nr
Match: gi|1238856878|ref|XP_022245332.1| (nuclear receptor subfamily 2 group C member 2-like isoform X2 [Limulus polyphemus]) HSP 1 Score: 135.961 bits (341), Expect = 1.274e-35 Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0 Query: 2 PAWILSCLSLTRGDRRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 P + L + + RHYGAISCEGCKGFFKRSIRKQLGY CRGN+DCEVTKHHRNRCQYCRLQKCLAMGMR+D Sbjct: 140 PPFELCVVCGDKASGRHYGAISCEGCKGFFKRSIRKQLGYACRGNRDCEVTKHHRNRCQYCRLQKCLAMGMRAD 213 The following BLAST results are available for this feature:
BLAST of nuclear hormone receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of nuclear hormone receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of nuclear hormone receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold58_size443543:330609..331203+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold58_size443543-processed-gene-3.1 ID=snap_masked-scaffold58_size443543-processed-gene-3.1|Name=nuclear hormone receptor|organism=Tigriopus kingsejongensis|type=gene|length=595bp|location=Sequence derived from alignment at scaffold58_size443543:330609..331203+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'nuclear hormone receptor' has the following synonyms
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