hypothetical protein BRAFLDRAFT_128090, snap_masked-scaffold59_size442576-processed-gene-0.4 (gene) Tigriopus kingsejongensis

Overview


Name	hypothetical protein BRAFLDRAFT_128090
Unique Name	snap_masked-scaffold59_size442576-processed-gene-0.4
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 90.5077 bits (223), Expect = 2.662e-19
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 0

Query:    4 TQEDPSSQGLEPRRS--KICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHC-KNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVV 123
            T  +PSSQ +  R +  ++C +C GE    H+ YG   C SCRAFFRR++Q +    F C      C IN+QTR+ CQ CRF+ CI AGM+   VL D  +R++   MI        N TP++
Sbjct:   87 TLSEPSSQIIIRREALPRLCQIC-GEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSKKSAMILN------NNTPLL 202

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 87.0409 bits (214), Expect = 3.940e-18
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 0

Query:   20 ICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVVNETAPVVLRMV 134
            +C+VC G+    H++YG  ACFSCRAFFRR++   ++  + C     C I + TR+ CQ CR++ C+ +GM+P  VL++  K +  R +IK   ++       VN    + + +V
Sbjct:   90 VCNVC-GDKAPDHIHYGGIACFSCRAFFRRSV--PKHTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSS--RNLIKYVRKNKTTCGKNVNNNNTIEVNLV 199

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 81.2629 bits (199), Expect = 2.516e-16
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 0

Query:    4 TQEDPSSQGLEPRRS--KICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVF-HCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTR 104
            T  + SSQ +  R++  ++C +C GE    H+ YG   C SCRAFFRR++Q +    F  C     C IN++TR+ CQ CRF+ C+ AGM+   V  D  +R++
Sbjct:   88 TLSEDSSQIIIGRQALPRLCQIC-GEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSK 190

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 79.337 bits (194), Expect = 1.270e-15
Identity = 40/98 (40.82%), Postives = 52/98 (53.06%), Query Frame = 0

Query:    4 TQEDPSSQGLEPR-RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNG-----GTCEINVQTRRKCQGCRFRNCIRAGMQPDQV 95
             +E+P  +   P   + +C +C G+    H +YGA ACFSCRAFF RT+ +     F C  G     G C I   TR  CQ CR+R C+ AGM P  V
Sbjct:  119 VKEEPKKRKRRPEPMTDVCRIC-GDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYV 215

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4")

HSP 1 Score: 72.4034 bits (176), Expect = 1.129e-14
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 0

Query:    7 DPSSQGLEPRRSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSR-NPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKM 108
            D +S+  +P R++IC VC   A  YH  +GA  C  C++FF RT  +S  N +  CKN  +C I+ + R  C+ CR R C+R GM   +  +  G+R+ + KM
Sbjct:   24 DSNSKEEDPMRNQICRVCDEPAAGYH--FGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGMS--KAGSRYGRRSNWFKM 122

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10")

HSP 1 Score: 75.8702 bits (185), Expect = 1.531e-14
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 0

Query:   19 KICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLND--TGKRTRFRKMIK 110
            + C VC   A  +H  YG S+C +C+AFF+RTIQ   N  +       CEIN + R+ CQ CRF+ C+R GM  + V  D   G R ++R+MI+
Sbjct:  269 RTCLVCGDIASGFH--YGVSSCEACKAFFKRTIQG--NIEYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGRQKYRRMIE 358

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 74.7146 bits (182), Expect = 2.852e-14
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 0

Query:   17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVL 96
            R   C +C   A   H++YGA AC SCRAFFRR +    N  +HC    TC I  +TR+ CQ CRF  C+ AGM+   V+
Sbjct:   59 RKVTCHICSDTAND-HIHYGAIACXSCRAFFRRAV--ICNAEYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVM 135

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53")

HSP 1 Score: 75.485 bits (184), Expect = 3.377e-14
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0

Query:    5 QEDPSSQGLEPRRSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGM 90
              +PSSQ   P++S +C +C   A   H  YG   C  C+ FF+RT+Q  R  ++ C   G CEIN   R +CQ CRF+ C++ GM
Sbjct:  270 NNNPSSQ---PQQSLVCMICEDRATGLH--YGIITCEGCKGFFKRTVQNKR--IYTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0")

HSP 1 Score: 74.3294 bits (181), Expect = 4.483e-14
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 0

Query:   19 KICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVL 96
            ++C VC   A  YH  Y A AC  C+ FFRR+I ++ N  + CK  G CEI++  RRKCQ CR + C   GM+ + V+
Sbjct:  171 ELCLVCGDRASGYH--YNALACEGCKGFFRRSITKNSN--YTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVV 244

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13")

HSP 1 Score: 74.3294 bits (181), Expect = 5.060e-14
Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = 0

Query:   13 LEPRRSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPV 122
            L P   + C+VC   A   H  YGA++C  C+ FFRR++++ R  V+ C+    C +N   R  C+ CR + CI+AGM+   V N+   R   RK    ++ +  N   V
Sbjct:  143 LAPNNIQNCAVCGDRATGKH--YGAASCDGCKGFFRRSVRKER--VYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNER-DRISCRKKTSAKDMNSANELTV 247

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|13431920|sp|Q9W785.1|THA_SALSA (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.329e-16
Identity = 67/225 (29.78%), Postives = 103/225 (45.78%), Query Frame = 0

Query:    9 SSQGLEP---RRSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI----KKQEQDDPNATPVVNETAPVVLRMVKKTKRRPDSSGDEGTGSHCAQHET-ADTEGESQDHHLPLSQTSIPAKSPKMAPTPRVLTAKNSNITNGMFDPIPSQLVSPLIHEVTSMAERL 225
            S QG  P    + + C VC  +A  YH  Y    C  C+ FFRRTIQ++ +P + CK  G C I+  TR +CQ CRFR CI   M  D VL+D+ KR   R++I    +K+++D+                +VK  + RP+    E       +H T A     +Q  H    +  +P     +  +PR  T     +    F    +++++P I  V   A++L
Sbjct:   44 SVQGYIPSYLEKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFRKCIAVCMAMDLVLDDS-KRVAKRRLIEENREKRKKDE----------------IVKTLQARPEPDSSEW---ELIRHVTEAHRHTNAQGSHWKQKRKFLPE---DIGQSPRAPTPDGDKVDLEAFSEF-TKIITPAITRVVDFAKKL 242

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|2500920|sp|Q28570.1|THA_SHEEP (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-16
Identity = 59/205 (28.78%), Postives = 94/205 (45.85%), Query Frame = 0

Query:   21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVVNETAPVVLRMVKKTKRRPDSSGDEGTGSHCAQHETADTEGESQDHHLPLSQTSIPAKSPKMAPTPRVLTAKNSNITNGMFDPIPSQLVSPLIHEVTSMAERL 225
            C VC  +A  YH  Y    C  C+ FFRRTIQ++ +P + CK    C I+  TR +CQ CRF+ CI  GM  D VL+D+ KR   RK+I++  +                  M++  ++RP+ + +E    H A      T   +Q  H    +  +P     +  +P V       +    F    +++++P I  V   A++L
Sbjct:   53 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDS-KRVAKRKLIEQNRERRRKE------------EMIRSLQQRPEPTPEEWDLIHVATEAHRST--NAQGSHWKQRRKFLPD---DIGQSPIVSMPDGDKVDLEAFSEF-TKIITPAITRVVDFAKKL 236

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|6094469|sp|Q98867.1|THAA_DANRE (RecName: Full=Thyroid hormone receptor alpha-A; Short=zTRalpha-A; AltName: Full=Nuclear receptor subfamily 1 group A member 1-A; AltName: Full=Thyroid hormone receptor alpha-1; Short=TRalpha-1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.476e-16
Identity = 49/133 (36.84%), Postives = 71/133 (53.38%), Query Frame = 0

Query:   21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI---KKQEQDDPNATPVVNETAPVV-----LRMVKKTKRRPDSSG 145
            C VC  +A  YH  Y    C  C+ FFRRTIQ++ +P + CK    C I+  TR +CQ CRFR CI  GM  D VL+D+ KR   R++I   +++ + +     + N   P V     +RMV +  R  ++ G
Sbjct:   57 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRFRKCISVGMAMDLVLDDS-KRVAKRRLIEENREKRKKEEIVKTLHNRPEPTVSEWELIRMVTEAHRHTNAQG 186

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|13431919|sp|Q9W6N4.1|THA_HIPHI (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.315e-16
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 0

Query:   21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQ 114
            C VC  +A  YH  Y    C  C+ FFRRTIQ++ +P + CK  G C I+  TR +CQ CRF+ CI  GM  D VL+D+ KR   R++I++  +
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDS-KRVAKRRLIEENRE 149

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|135715|sp|P18119.1|THBB_XENLA (RecName: Full=Thyroid hormone receptor beta-B; Short=TRbetaB; AltName: Full=Nuclear receptor subfamily 1 group A member 2-B)

HSP 1 Score: 83.5741 bits (205), Expect = 9.739e-16
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 0

Query:   17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQ 114
            + ++C VC  +A  YH  Y    C  C+ FFRRTIQ++ +P + CK  G C I+  TR +CQ CRF+ C   GM  D VL+D+ KR   RK+I++  +
Sbjct:   56 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCKTVGMATDLVLDDS-KRLAKRKLIEENRE 150

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|1942117|pdb|2NLL|B (Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding Domain Heterodimer Bound To Thyroid Response Element Dna)

HSP 1 Score: 86.2705 bits (212), Expect = 1.317e-16
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0

Query:   19 KICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI 109
            ++C VC  +A  YH  Y    C  C+ FFRRTIQ++ +P + CK  G C I+  TR +CQ CRF+ CI  GM  D VL+D+ KR   RK+I
Sbjct:    2 ELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS-KRLAKRKLI 89

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|736171725|ref|XP_010766052.1| (PREDICTED: thyroid hormone receptor beta-like [Notothenia coriiceps])

HSP 1 Score: 90.5077 bits (223), Expect = 1.383e-16
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 0

Query:   17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQ 114
            + ++C VC  +A  YH  Y    C  C+ FFRRTIQ++ NP + CK  G C I+  TR +CQ CRF+ CI  GM  D VLND+ KR   RK+I++  Q
Sbjct:   16 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKYEGNCVIDKVTRNQCQECRFKKCIAVGMATDLVLNDS-KRLAKRKLIEENRQ 110

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|345505251|gb|AEN99848.1| (nuclear receptor subfamily 1 group A member 2, partial [Oncorhynchus mykiss])

HSP 1 Score: 87.0409 bits (214), Expect = 1.465e-16
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 0

Query:   17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQ 114
            + ++C VC  +A  YH  Y    C  C+ FFRRTIQ++ NP + CK    C I+  TR +CQ CRF+ CI  GM  D VL+D+ KR   RK+I++  +
Sbjct:   19 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKYEAKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDS-KRLAKRKLIEENRE 113

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|532020886|gb|AGT63323.1| (thyroid hormone receptor alpha, partial [Taeniopygia guttata])

HSP 1 Score: 85.8853 bits (211), Expect = 2.265e-16
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 0

Query:   21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI 109
            C VC  +A  YH  Y    C  C+ FFRRTIQ++ +P + CK  G C I+  TR +CQ CRF+ CI  GM  D VL+D+ KR   RK+I
Sbjct:   16 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDS-KRVAKRKLI 101

[Close]

BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|62526621|gb|AAX84685.1| (thyroid receptor beta [Carassius auratus])

HSP 1 Score: 92.8189 bits (229), Expect = 2.706e-16
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 0

Query:    5 QEDPSSQGLEPR---RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI 109
            ++DP   G  P    + ++C VC  +A  YH  Y    C  C+ FFRRTIQ++ NP + CK  G C I+  TR +CQ CRF+ CI  GM  D VL+D+ KR   RK+I
Sbjct:   13 KDDPMQNGYVPSYLDKDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDS-KRLAKRKLI 117

[Close]

BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|957073942|gb|ALQ10866.1| (thyroid hormone receptor beta, partial [Cyprinodon nevadensis amargosae])

HSP 1 Score: 86.6557 bits (213), Expect = 2.897e-16
Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 0

Query:   21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI 109
            C VC  +A  YH  Y    C  C+ FFRRTIQ++ NP + CK  G C I+  TR +CQ CRF+ CI  GM  D VL+D+ KR   RK+I
Sbjct:    1 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKYEGRCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDS-KRLAKRKLI 86

[Close]

BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|829489624|gb|AKL71616.1| (ecdysone receptor [Macrobrachium rosenbergii])

HSP 1 Score: 93.5893 bits (231), Expect = 3.959e-16
Identity = 60/185 (32.43%), Postives = 94/185 (50.81%), Query Frame = 0

Query:   11 QGLEPRRSK-ICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRF--RKMIKKQEQDDPNA-TPVVNETAPVVLRMVK----KTKRRPDSSGDEGTGSHCAQ-----HETADTEGESQDHHLPLSQTSIPAKSP 182
            +G  PR+ + +C VC   A  YH  Y A  C  C+ FFRR+I  ++N V+ CK G  CE+++  RRKCQ CR + C+  GM+P+ V+ ++  + +   +K  +K ++D P+A +P+V +     L   K     +   P    + GTGS          E   +E E +D  LPLS+       P
Sbjct:  151 KGPIPRQQEELCLVCADRASGYH--YNALTCEGCKGFFRRSI--TKNAVYQCKYGNNCEMDMYMRRKCQECRLKKCLNVGMRPECVVPESQCQVKREQKKAREKDKKDYPSAGSPLVEDNKHSPLSPCKPKGPSSASVPSYKSNNGTGSFSITPMDWPQEKESSEEEGRDSKLPLSRGGGTGAKP 331

[Close]

BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|1133446516|ref|XP_019879846.1| (PREDICTED: ecdysone receptor-like, partial [Aethina tumida])

HSP 1 Score: 86.6557 bits (213), Expect = 4.683e-16
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 0

Query:   11 QGLEPRRSK-ICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVVNETAPVVLRM 133
            +G  PR+ + +C VC   A  YH  Y A  C  C+ FFRR+I  ++N V+ CK G  CEI++  RRKCQ CR + C+  GM+P+ V+ +     + ++   ++E+D PN+T      +P +++M
Sbjct:   40 KGPTPRQQEELCLVCGDRASGYH--YNALTCEGCKGFFRRSI--TKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKPNST---TNGSPDIIKM 156

[Close]

BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|1338844852|ref|XP_023665479.1| (thyroid hormone receptor beta isoform X4 [Paramormyrops kingsleyae])

HSP 1 Score: 90.5077 bits (223), Expect = 5.743e-16
Identity = 44/93 (47.31%), Postives = 56/93 (60.22%), Query Frame = 0

Query:   17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI 109
            + ++C VC  +A  YH  Y    C  C+ FFRRTIQ++ NP + CK  G C I+  TR +CQ CRF+ CI  GM  D VL D GKR   RK+I
Sbjct:   11 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCITVGMATDLVL-DEGKRLAKRKLI 100

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|1215271612|gb|OXA57923.1| (Ecdysone receptor [Folsomia candida])

HSP 1 Score: 92.8189 bits (229), Expect = 5.923e-16
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 0

Query:    6 EDPSSQGLEPRRSK-ICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNA-----TPVVNETAPVVLRMVKKTKRRPDSSGDEGTG 150
            E    +G  PR+ + +C VC   A  YH  Y A  C  C+ FFRR+I  ++N V+ CK G  CEI++  RRKCQ CR + C+  GM+P+ V+ +     +      ++E+D PN+     TP   E   V L +V  T  RP  +    TG
Sbjct:  126 EGKKKKGPVPRQQEELCLVCGDRASGYH--YNALTCEGCKGFFRRSI--TKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLAVGMRPECVVPEYQCAVKREAKKAQKEKDKPNSTTQSPTPKEEERVTVGLSVVGGTPERPPPTKLRATG 272

The following BLAST results are available for this feature:

BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr

BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 22


Match Name	E-value	Identity	Description
EMLSAG00000011907	2.662e-19	40.65	supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1...	[more]
EMLSAG00000012651	3.940e-18	34.78	supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 ge...	[more]
EMLSAG00000010267	2.516e-16	39.42	supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1...	[more]
EMLSAG00000004174	1.270e-15	40.82	supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-...	[more]
EMLSAG00000005620	1.129e-14	37.86	supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1...	[more]
EMLSAG00000008071	1.531e-14	41.49	supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 ...	[more]
EMLSAG00000008261	2.852e-14	45.00	supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 ...	[more]
EMLSAG00000008543	3.377e-14	40.70	supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1...	[more]
EMLSAG00000005090	4.483e-14	43.59	supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-...	[more]
EMLSAG00000007361	5.060e-14	33.64	supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1...	[more]

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|13431920\|sp\|Q9W785.1\|THA_SALSA	3.329e-16	29.78	RecName: Full=Thyroid hormone receptor alpha; AltN...	[more]
gi\|2500920\|sp\|Q28570.1\|THA_SHEEP	4.278e-16	28.78	RecName: Full=Thyroid hormone receptor alpha; AltN...	[more]
gi\|6094469\|sp\|Q98867.1\|THAA_DANRE	4.476e-16	36.84	RecName: Full=Thyroid hormone receptor alpha-A; Sh...	[more]
gi\|13431919\|sp\|Q9W6N4.1\|THA_HIPHI	5.315e-16	43.62	RecName: Full=Thyroid hormone receptor alpha; AltN...	[more]
gi\|135715\|sp\|P18119.1\|THBB_XENLA	9.739e-16	41.84	RecName: Full=Thyroid hormone receptor beta-B; Sho...	[more]

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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1942117\|pdb\|2NLL\|B	1.317e-16	46.15	Chain B, Retinoid X Receptor-Thyroid Hormone Recep...	[more]
gi\|736171725\|ref\|XP_010766052.1\|	1.383e-16	45.92	PREDICTED: thyroid hormone receptor beta-like [Not...	[more]
gi\|345505251\|gb\|AEN99848.1\|	1.465e-16	42.86	nuclear receptor subfamily 1 group A member 2, par...	[more]
gi\|532020886\|gb\|AGT63323.1\|	2.265e-16	47.19	thyroid hormone receptor alpha, partial [Taeniopyg...	[more]
gi\|62526621\|gb\|AAX84685.1\|	2.706e-16	43.52	thyroid receptor beta [Carassius auratus]	[more]
gi\|957073942\|gb\|ALQ10866.1\|	2.897e-16	48.31	thyroid hormone receptor beta, partial [Cyprinodon...	[more]
gi\|829489624\|gb\|AKL71616.1\|	3.959e-16	32.43	ecdysone receptor [Macrobrachium rosenbergii]	[more]
gi\|1133446516\|ref\|XP_019879846.1\|	4.683e-16	36.29	PREDICTED: ecdysone receptor-like, partial [Aethin...	[more]
gi\|1338844852\|ref\|XP_023665479.1\|	5.743e-16	47.31	thyroid hormone receptor beta isoform X4 [Paramorm...	[more]
gi\|1215271612\|gb\|OXA57923.1\|	5.923e-16	35.76	Ecdysone receptor [Folsomia candida]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold59_size442576	supercontig	scaffold59_size442576:78111..80696 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold59_size442576-processed-gene-0.4-mRNA-1	snap_masked-scaffold59_size442576-processed-gene-0.4-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold59_size442576:78111..80696+

gene from alignment at scaffold59_size442576:78111..80696+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold59_size442576-processed-gene-0.4 ID=snap_masked-scaffold59_size442576-processed-gene-0.4|Name=hypothetical protein BRAFLDRAFT_128090|organism=Tigriopus kingsejongensis|type=gene|length=2586bp|location=Sequence derived from alignment at scaffold59_size442576:78111..80696+ (Tigriopus kingsejongensis)
ATGGAGGTGACGCAAGAAGATCCATCGTCCCAAGGTCTGGAGCCTCGGCG
TTCCAAGATCTGCTCGGTTTGCTTCGGTGAGGCCGAGACCTACCACTTGA
ACTATGGAGCCAGTGCTTGCTTCAGTTGTCGGGCCTTCTTTCGCCGCACC
ATCCAACGGTCAAGGAATCCCGTGTTCCACTGCAAAAATGGTGGAACCTG
CGAGATCAACGTGCAAACGCGACGCAAGTGTCAGGGTTGCCGCTTCAGAA
ACTGCATACGAGCCGGAATGCAGCCGGATCAGGTCCTCAATGACACGGGC
AAAAGGACCAGGTTCCGGAAGATGATCAAGAAGCAGGAGCAGGATGATCC
CAATGCAACTCCCGTTGTCAATGAGACCGCTCCGGTGGTCTTGCGCATGG
TGAAAAAGACCAAACGCCGGCCAGACAGCTCCGGGGACGAGGGAACGGGA
TCCCACTGTGCCCAGCATGAAACTGCCGACACGGAAGGCGAGTCTCAGGA
TCACCATTTACCTCTTTCTCAGACGAGCATTCCTGCCAAATCCCCCAAAA
TGGCACCCACTCCTCGGGTGTTGACAGCTAAAAACTCGAACATAACCAAT
GGGATGTTTGATCCAATCCCCTCGCAATTAGTGAGTCCCTTGATCCACGA
GGTCACGAGTATGGCTGAGAGGCTGGTCCATCCTGCAACTGTGAGTTTTG
ATTTTGACGAATCCCAATTGGAGGTTGACGTCCCTGGAGCCATGGGCTCC
GGTTTGCCCGGCAGACAGGCCTACATTGAACTGGAGCCCAGAAGGCCCGC
TCATATGCCCTGGAATTCAGAGGTGCCCACTTATCAGACCAATAGGGAGA
TCACGAGACTGGAGGCCAATGAGGAAGAGATTCAGTCCGAGATGGAGATC
CAACAGCCATTCGAAGCTGGCTCCTTACCAATTCTCAGTTGTGATATCCT
TGAGCCCTTGAACGAGGGGAGAGTTTCGCACACAGCTACCAGTCAGAAGA
CCATAGACGAGCTGGGTGTCATCTATCTGGCATTGGATGAGCATTGCAAG
AGCTCGCGGTTCAAAGTCAAGTCCTCCCGAACAGCTCATTATCGCCAGCG
CAAGCGGATGATGACCTTCCTGGAAAGGTCAAAGGACGCCTGGCACCACG
CCTGCAGTCAGACGATCCTAGAGTACTCCGTGTTCGAAGAATGGCTTCAA
TTCCATCTGGGCCAAGCCCGGATGACCAAACCCCTCCTTCGGGCTTACCT
CGTGCACCTGGCTCAGCTCCTGAAGAACTTTGCATGTCAACTACCTGAGT
TTACGGCCCTGAGCCAAGGGGATCAATGCAAGTTGCTCTACCGCAACACA
CCCATCTTTGTGCAATACTTTTGCGGACGCTACATGAACTGCCTCACTGG
GCTGGAGCAGATGCAATGGCTCTTCCCCACCAAAGTCGATGGGAAATTTG
CCCAAAAGTACGCTTACCTCCCCAAGGTGCGTTTTCGGTTCATGAACCAC
GTCGTCGACATCTTCACCAATCCGGATGCTGAGCATCAGTACGAGGAGAA
AGCTGCAGAATTGAGCAAGTATCCCCTCCTCACCAGCTGCCACTACATTG
TGGCCATGGGTTGCTTGTTCGCCTCGGGATACACCACCAAACTGGACGAT
CAGTCTGCTATCCTGGGTCACATGGCGGACATTCTGACCTTCGCGGACTG
GACCAACCAGGTCTATGAGTGTGCCAGCCGCGAAACCCTGACCAATATCG
TGAGCATTCTGGAGAGCATGGCCGTCTTTTTCGAGACCAGCATCCGATGG
CAGGAGTCTGAGTGCTTCTTCCTAGAGATCACCAAGATCATCGCTCTACC
CTACACCACGGAGGAGGAGTGCTGGCTCATTCGCCAGTACGAGAGGTTCG
ACCGGGCCTACAGTGAAGTTTCCTTCGGCGAGGAGATCATGAAGGAGTTC
ATCATGTTCAGCTACGATGTGCCCCTCTCAAAGACCTTTGTGCCCAAGAT
GGTCTCAGTTTGGTCAGAGCGCTTTCGACGCATTATGAAGATCCACGAGG
AGTTCAATGCCCTATGTGACAAGGATCAAGCGGCTCTCTTGGGGACCAAT
GTCATCGATGCAGTTTCCCTGTGTCTGGCCAAAGTGGAGAACTTCGAGGA
CGGCAATAAACAGTTGAAGTTCTCCTTGGGGACACTGGATGACAGCATTT
TTAAGCAAAACTACGACGGAGTGATGGATGTGTCTCGTTTGAAGACCATG
ACTCTCATCCGGATCAATGATCTCACCTCCGTGGTCCAAAGCCCCCATGT
GATTGAGCAGTTCCAGGGGATCTCCTCCAGACTCTCCCATCTAGTCAAGA
GTGTGGATGTGTTCAAGCTTTTGATCTTCATCACCATGTTCACCACCCAC
AGCCAAGTGCAATCGGTCAGCATCGACGATGTCCAAAGCAAATACCTGAC
CATCTTCAAGCGAAGACTACAAAGTCGAGGAGGTTCAGCCGACAATTTTG
ATCAGTTCAAGAATGCCTTGCGAGATATCCGACAATTGTCGAAAATCATC
ACTGAAATCATCGCTCGGAAGCCATCCATCGGGTAG

Synonyms

The feature 'hypothetical protein BRAFLDRAFT_128090' has the following synonyms


Synonym
Tk11663

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