hypothetical protein BRAFLDRAFT_128090, snap_masked-scaffold59_size442576-processed-gene-0.4 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000009941 (supercontig:LSalAtl2s:LSalAtl2s649:484085:485655:-1 gene:EMLSAG00000009941 transcript:EMLSAT00000009941 description:"maker-LSalAtl2s649-snap-gene-4.11") HSP 1 Score: 57.3806 bits (137), Expect = 6.608e-9 Identity = 24/75 (32.00%), Postives = 41/75 (54.67%), Query Frame = 0 Query: 21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQV 95 C VC ++ H YG C C++FF+R+++R N + C+ C ++ R +CQ CR + C + GM+ + V Sbjct: 83 CVVCGDKSSGKH--YGQFTCEGCKSFFKRSVRR--NLTYQCRGSKNCPVDQHHRNQCQHCRLKKCFKMGMRREAV 153
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Match: EMLSAG00000007741 (supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-1 gene:EMLSAG00000007741 transcript:EMLSAT00000007741 description:"maker-LSalAtl2s450-snap-gene-2.9") HSP 1 Score: 57.3806 bits (137), Expect = 1.122e-8 Identity = 29/86 (33.72%), Postives = 41/86 (47.67%), Query Frame = 0 Query: 21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKN----GGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKR 102 C VC + H YG +C C FF+R+I R R ++ CK G C I+ R +C+ CR + C M D V ++ G R Sbjct: 108 CKVCGDRSSGKH--YGIYSCDGCSGFFKRSIHRQR--IYTCKAQGEFKGRCPIDKTHRNQCRACRLKKCFDCSMNKDAVQHERGPR 189
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|6094474|sp|Q91279.1|THB_PAROL (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 89.3521 bits (220), Expect = 1.215e-17 Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 0 Query: 17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI 109 + ++C VC +A YH Y C C+ FFRRTIQ++ NP + CK G C I+ TR +CQ CRF+ CI GM D VL+D+ KR RK+I Sbjct: 28 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDS-KRLAKRKLI 117
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|215273960|sp|Q9PVE4.2|THB_DANRE (RecName: Full=Thyroid hormone receptor beta; Short=TR-beta; Short=TRb; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=Thyroid hormone receptor beta-1; Short=TRbeta1) HSP 1 Score: 88.9669 bits (219), Expect = 1.431e-17 Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 0 Query: 17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI 109 + ++C VC +A YH Y C C+ FFRRTIQ++ NP + CK G C I+ TR +CQ CRF+ CI GM D VL+D+ KR RK+I Sbjct: 28 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDS-KRLAKRKLI 117
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|6094472|sp|O42295.2|THA_APTPA (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1) HSP 1 Score: 87.8113 bits (216), Expect = 3.923e-17 Identity = 60/205 (29.27%), Postives = 91/205 (44.39%), Query Frame = 0 Query: 21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVVNETAPVVLRMVKKTKRRPDSSGDEGTGSHCAQHETADTEGESQDHHLPLSQTSIPAKSPKMAPTPRVLTAKNSNITNGMFDPIPSQLVSPLIHEVTSMAERL 225 C VC +A YH Y C C+ FFRRTIQ++ +P + CK G C I+ TR +CQ CRF+ CI GM D VL+D+ KR RK+I++ M+K + RP+ S +E H A +Q H + +P + +P + F +++++P I V A++L Sbjct: 51 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDS-KRVAKRKLIEEN------------RERRRKEEMIKSLQHRPNPSAEEWELIHVVTE--AHRSTNAQGSHWKQKRKFLPE---DIGQSPMASMPDGDKVDLEAFSEF-TKIITPAITRVVDFAKKL 234
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 87.0409 bits (214), Expect = 4.712e-17 Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 0 Query: 17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQ 114 + ++C VC +A YH Y C C+ FFRRTIQ++ +P + CK G C I+ TR +CQ CRF+ CI GM D VL+D+ KR RK+I++ + Sbjct: 15 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDS-KRLAKRKLIEENRE 109
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|135710|sp|P04625.1|THA_CHICK (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1) HSP 1 Score: 87.0409 bits (214), Expect = 6.045e-17 Identity = 61/205 (29.76%), Postives = 91/205 (44.39%), Query Frame = 0 Query: 21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVVNETAPVVLRMVKKTKRRPDSSGDEGTGSHCAQHETADTEGESQDHHLPLSQTSIPAKSPKMAPTPRVLTAKNSNITNGMFDPIPSQLVSPLIHEVTSMAERL 225 C VC +A YH Y C C+ FFRRTIQ++ +P + CK G C I+ TR +CQ CRF+ CI GM D VL+D+ KR RK+I++ N M+K + RP S +E H T +Q H + +P + +P + F +++++P I V A++L Sbjct: 51 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDS-KRVAKRKLIEE------------NRERRRKEEMIKSLQHRPSPSAEEWELIHVVTEAHRST--NAQGSHWKQKRKFLPE---DIGQSPMASMPDGDKVDLEAFSEF-TKIITPAITRVVDFAKKL 234
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|586094|sp|P18113.2|THB_RAT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 87.8113 bits (216), Expect = 6.136e-17 Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 0 Query: 17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI 109 + ++C VC +A YH Y C C+ FFRRTIQ+S +P + CK G C I+ TR +CQ CRF+ CI GM D VL+D+ KR RK+I Sbjct: 103 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDS-KRLAKRKLI 192
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|586093|sp|P37242.1|THB_MOUSE (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 87.8113 bits (216), Expect = 6.246e-17 Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 0 Query: 17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI 109 + ++C VC +A YH Y C C+ FFRRTIQ+S +P + CK G C I+ TR +CQ CRF+ CI GM D VL+D+ KR RK+I Sbjct: 103 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDS-KRLAKRKLI 192
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|13431914|sp|Q90382.1|THA_CAIMO (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1) HSP 1 Score: 87.0409 bits (214), Expect = 6.342e-17 Identity = 60/205 (29.27%), Postives = 90/205 (43.90%), Query Frame = 0 Query: 21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVVNETAPVVLRMVKKTKRRPDSSGDEGTGSHCAQHETADTEGESQDHHLPLSQTSIPAKSPKMAPTPRVLTAKNSNITNGMFDPIPSQLVSPLIHEVTSMAERL 225 C VC +A YH Y C C+ FFRRTIQ++ +P + CK G C I+ TR +CQ CRF+ CI GM D VL+D+ KR RK+I++ M+K + RP S +E H T +Q H + +P + +P + F +++++P I V A++L Sbjct: 50 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDS-KRVAKRKLIEEN------------RERRRKEEMIKSLQHRPSPSAEEWELIHVVTEAHRST--NAQGSHWKQKRKFLPE---DIGQSPMASMPDGDKVDLEAFSEF-TKIITPAITRVVDFAKKL 233
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A) HSP 1 Score: 86.6557 bits (213), Expect = 7.107e-17 Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 0 Query: 17 RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQ 114 + ++C VC +A YH Y C C+ FFRRTIQ++ +P + CK G C I+ TR +CQ CRF+ CI GM D VL+D KR RK+I++ + Sbjct: 15 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDN-KRLAKRKLIEENRE 109
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Match: gi|269849736|sp|P15204.3|THAA_XENLA (RecName: Full=Thyroid hormone receptor alpha-A; Short=TRalphaA; Short=XenTR-alpha1; AltName: Full=Nuclear receptor subfamily 1 group A member 1-A) HSP 1 Score: 87.0409 bits (214), Expect = 7.378e-17 Identity = 49/127 (38.58%), Postives = 68/127 (53.54%), Query Frame = 0 Query: 21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVVNETAPVVLRMVKKTKRRPDSSGDE 147 C VC +A YH Y C C+ FFRRTIQ++ +P + CK G C I+ TR +CQ CRF+ CI GM D VL+D+ KR RK+I++ Q M+K ++RP+ S +E Sbjct: 61 CVVCSDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDS-KRVAKRKLIEENRQRRRKE------------EMIKTLQQRPEPSSEE 172
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|657600362|gb|AID52842.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 107.071 bits (266), Expect = 4.097e-20 Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 0 Query: 6 EDPSSQGLEPRRSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFR---KMIKK 111 +DPS RRSKIC++C ++++HLNYGA C SCRAFFRR +Q R CK C++ R KC+ CR C++AGM V+N+ K RFR KM K+ Sbjct: 25 DDPSG-----RRSKICAICLTNSDSFHLNYGAPTCLSCRAFFRRIVQNGRVNKLTCKRNNDCDVTQSNRTKCRKCRLEACLKAGMNMQSVMNEIQKHDRFRNYDKMWKR 128 HSP 2 Score: 98.5969 bits (244), Expect = 1.795e-17 Identity = 81/344 (23.55%), Postives = 149/344 (43.31%), Query Frame = 0 Query: 425 LSKYPLLTSCHYIVAMGCLFASGYTTKLDDQSAILGHMADILTFADWTNQVYECASRETLTNIVSILESMAVFFETSIRWQESECFFLEITKIIALPYTTEEECWLIRQYERFDRAYSEVSFGEEIMKEFIMFS-YDVPLSKTFVPKMVSVWSERFRRIMKIHEEFNALCDKDQAALLGTNVIDAVSLCLAKVENFEDGNKQLKFSLGTLDDSIFKQ---NYDGVMDVSRLKTMTLIRINDLTSVVQSPHVIEQFQGISSRLSHLVKSVDVFKLLIFITMFTTHSQVQSV----SIDDVQSKYLTIFKRRLQSRGGSADNFDQFKNALRDIRQLSKIITEIIAR 760 ++K P+ S + +A CLF + D I+ + +L Y R +L ++ +++ + S+ W+ + K I LP+T E W+ +++ EV+ GEE MK I ++VP F + + +WS+RF I++ EEFN L +Q L ++ L K E+ D QL+F+LG D ++ + + +V + M + R N + EQ + I S + K +D K+ + M+ ++ ++V SI + ++LT+ R+L + G S + DQ + D+ + I + R Sbjct: 484 IAKIPVDQSKVFTIACACLFEPHPEAECDSVEQIIQNQEKVLG--------YFSLDRGSLWELIDATRRLSLLY-ASMSWESTPRL-----KSIQLPFTDMENSWMDEACLMISKSFQEVALGEEHMKHVIASELFEVPFPPNFFQEYLKLWSKRFLTILQGFEEFNTLSSANQCLLWQATAKKVFTMTLIKFEHEPDAISQLRFALGVEDIQTLEEMIRPWGAIPEV--MPKMGMKRSNRVNKFFDK----EQEEIIEEMKSSIAKVIDDKKIFGNLFMYLLLAEAKNVLPKESIASIGDRHLTVLYRKLDNDGDSKVSVDQLNKCIADLNTYNAQIEPLFCR 807
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|1325280017|ref|XP_023324670.1| (uncharacterized protein LOC111698547 [Eurytemora affinis]) HSP 1 Score: 99.3673 bits (246), Expect = 4.992e-18 Identity = 86/324 (26.54%), Postives = 142/324 (43.83%), Query Frame = 0 Query: 20 ICSVCFGEAETYHLNYGASACFSCRAFFRRTI--QRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVVNETAPVVLRMVKKTKRRPDSSGDEGTGSHCAQHETADTEGESQDHHLPLSQTSIPAKSPKMAPTPRVLTAKNSNITNGMFD-PIPSQLVSPLIHEVTSMAERLVHPATVSFD-------FDESQLEVDVPGAMGSGLPGRQAYIELEPR--------------RPAHMPWNS--EVPTYQTNREITRLEANEEEIQSEMEIQQPFE--AGSLPILSCD 315 +C +C G+ H++YG CFSC+AFFRR + Q F CK CEIN++ R+ CQ CRF+ CI GM P VL+D ++ RF+K + E P ++ + + L + + + RR + ++A + Q S+PA P ++P R A +G D L+SPL + P FD +E ++E+D + + L ++ LE +P P N E P Y+ +R +++E +EE+ S M+++ FE + S P++S + Sbjct: 40 LCRIC-GDGAVRHVHYGGHCCFSCKAFFRRAVNWQTKNKRTFQCKFESGCEINIKNRKTCQSCRFQKCITTGMNPSWVLSDDQRKKRFKKYRETGEL-SPTSSQDSSREGELDLPLERGSGRR--------------RAKSAPSHAHRQASRFNHDDLSLPASQP-VSPLERDYGACRIARCSGELDIKTEPTLLSPLRED----------PFPFGFDPLDHVPIKEEPEMELDDLNNLQT-LISTCDFVTLEEEKKKTEGKPPDFSQYKPPDFPENKIPEFPDYKPDRS-SKVELGQEEMLSLMKLEMSFENSSSSFPVMSAE 334
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis]) HSP 1 Score: 99.3673 bits (246), Expect = 9.137e-18 Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 0 Query: 6 EDPSSQGLEPRRSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDD 116 E P +Q ++ C +C E H++YGA CFSCRAFFRR+IQ + C+ CEIN++TR+ CQ CR++ C+ GM+ + VL++ ++ RFRK+ ++ E +D Sbjct: 26 EKPHAQAKLLSPTEKCKIC-NEPAAKHIHYGAMTCFSCRAFFRRSIQNKTANSYTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRRFRKVRERHEAND 135
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|1126167808|ref|XP_019615783.1| (PREDICTED: oxysterols receptor LXR-beta-like [Branchiostoma belcheri]) HSP 1 Score: 97.8265 bits (242), Expect = 1.263e-17 Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 0 Query: 5 QEDPSSQGLEPRRSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPN 118 +E P + G P C VC +A +H YGA +C C+ FFRR+IQR N + CK+GG CE++ RRKCQ CR R C AGM+P+ +L + +++F K++ D+P Sbjct: 45 EEKPQAAGDAPVDPTACVVCGDKASGFH--YGALSCEGCKGFFRRSIQR--NATYKCKSGGKCEMDTYMRRKCQECRLRKCKEAGMKPECLLTNVQIQSKFLWRRKRKGGDEPG 154
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|260801841|ref|XP_002595803.1| (hypothetical protein BRAFLDRAFT_128090 [Branchiostoma floridae] >gi|229281052|gb|EEN51815.1| hypothetical protein BRAFLDRAFT_128090 [Branchiostoma floridae]) HSP 1 Score: 97.0561 bits (240), Expect = 2.308e-17 Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = 0 Query: 6 EDPSSQGLEPRRSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVVNETAPV 129 E P + + P C VC +A +H YGA +C C+ FFRR+IQR+ N + CK GG CEI+ RRKCQ CR R C AGM+ + +L + +++F KKQ D+P ++ +P Sbjct: 46 EKPQVESVAPVDPTACVVCGDKASGFH--YGALSCEGCKGFFRRSIQRNAN--YKCKYGGKCEIDTYMRRKCQECRLRKCKEAGMKSECLLTNVQIQSKFLWRRKKQGDDEPAPPTTQHKMSPT 165
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|657600358|gb|AID52840.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 96.2857 bits (238), Expect = 6.520e-17 Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = 0 Query: 21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQD 115 C +C A HL+YGA CFSC+AFFRRT Q F CK+ G C + + R+KC+ CR+ CIR GM+P VL+D K RF+K + K+ D Sbjct: 29 CQICQDPA-IRHLHYGAITCFSCKAFFRRTSQSKAYQKFMCKSTGECNVLHKLRKKCRKCRYEKCIRVGMKPSLVLSDEEKIKRFKKSLSKKAMD 122
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|657600356|gb|AID52839.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 96.6709 bits (239), Expect = 6.664e-17 Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 0 Query: 21 CSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQDDPNATPVVNETA 127 C VC GE H++YG+ CFSCRAFFRR+IQ + C+ G CEI +++R+ CQ CR+ C+ AGM+P VL++ + RFRK +K+ + N+T NE + Sbjct: 88 CRVC-GEPAARHVHYGSVTCFSCRAFFRRSIQNKAWNNYSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKKARQ--NSTRKSNEGS 191
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|303324985|pdb|3M9E|A (Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With Inverted Palindrome Tre >gi|303324986|pdb|3M9E|B Chain B, Thyroid Hormone Beta Dna Binding Domain Homodimer With Inverted Palindrome Tre >gi|303324989|pdb|3M9E|E Chain E, Thyroid Hormone Beta Dna Binding Domain Homodimer With Inverted Palindrome Tre >gi|303324990|pdb|3M9E|F Chain F, Thyroid Hormone Beta Dna Binding Domain Homodimer With Inverted Palindrome Tre) HSP 1 Score: 87.0409 bits (214), Expect = 6.922e-17 Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 0 Query: 19 KICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMI 109 ++C VC +A YH Y C C+ FFRRTIQ+S +P + CK G C I+ TR +CQ CRF+ CI GM D VL+D+ KR RK+I Sbjct: 4 ELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDS-KRLAKRKLI 91
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|1020560485|ref|XP_016111565.1| (PREDICTED: thyroid hormone receptor beta [Sinocyclocheilus grahami]) HSP 1 Score: 93.5893 bits (231), Expect = 1.037e-16 Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 0 Query: 6 EDPSSQGLEPR---RSKICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTRFRKMIKKQEQ 114 ++P G P + ++C VC +A YH Y C C+ FFRRTIQ++ NP + CK G C I+ TR +CQ CRF+ CI GM D VLND+ KR RK+I++ Q Sbjct: 14 DEPMQNGYIPSYLDKDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLNDS-KRLAKRKLIEENRQ 122
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Match: gi|1325306415|ref|XP_023334818.1| (oxysterols receptor LXR-alpha-like [Eurytemora affinis]) HSP 1 Score: 90.8929 bits (224), Expect = 1.062e-16 Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 0 Query: 7 DPSSQGLEPRRS--------KICSVCFGEAETYHLNYGASACFSCRAFFRRTIQRSRNPVFHCKNGGTCEINVQTRRKCQGCRFRNCIRAGMQPDQVLNDTGKRTR 104 DP +G++ RR + C VC GE H YG C SCRAFFRR++ N + C G CE+N +TR++CQ CR+R C AGM+ VL DT K+ + Sbjct: 22 DPPPKGIKRRRKDENDDDIFRACKVC-GEEAGRHSYYGGQVCASCRAFFRRSVNSGANKAYFCVKNGNCEVNSKTRKQCQYCRYRLCEDAGMKTSWVLTDTEKKLK 126 The following BLAST results are available for this feature:
BLAST of hypothetical protein BRAFLDRAFT_128090 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 22
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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of hypothetical protein BRAFLDRAFT_128090 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold59_size442576:78111..80696+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold59_size442576-processed-gene-0.4 ID=snap_masked-scaffold59_size442576-processed-gene-0.4|Name=hypothetical protein BRAFLDRAFT_128090|organism=Tigriopus kingsejongensis|type=gene|length=2586bp|location=Sequence derived from alignment at scaffold59_size442576:78111..80696+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'hypothetical protein BRAFLDRAFT_128090' has the following synonyms
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