conserved hypothetical protein, snap_masked-scaffold632_size121914-processed-gene-0.11 (gene) Tigriopus kingsejongensis

Overview
Nameconserved hypothetical protein
Unique Namesnap_masked-scaffold632_size121914-processed-gene-0.11
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of conserved hypothetical protein vs. L. salmonis genes
Match: EMLSAG00000000055 (supercontig:LSalAtl2s:LSalAtl2s100:140007:140375:1 gene:EMLSAG00000000055 transcript:EMLSAT00000000055 description:"augustus_masked-LSalAtl2s100-processed-gene-1.4")

HSP 1 Score: 141.354 bits (355), Expect = 7.551e-45
Identity = 61/122 (50.00%), Postives = 92/122 (75.41%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHKVNREA 122
            MLS+++KEH    S+R+  +E  R+EA +A   LT +LTDHLNVGVA AY+NQKR+D++AK+LH HA  F +++  W+ +   F  +LK+LGD+ SWA++I+ DM ++S++LEY +KVNRE+
Sbjct:    1 MLSSMVKEHQTNKSKRKETEEILRKEASEAGGALTESLTDHLNVGVAXAYINQKRIDSQAKELHAHAEEFAKRSKEWINIIQGFQSSLKDLGDVLSWAQTIQSDMNILSSSLEYVYKVNRES 122
[Close]
BLAST of conserved hypothetical protein vs. SwissProt
Match: gi|426023994|sp|A1Z9S1.2|BL1S1_DROME (RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 1; Short=BLOC-1 subunit 1)

HSP 1 Score: 152.91 bits (385), Expect = 1.200e-47
Identity = 73/131 (55.73%), Postives = 97/131 (74.05%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHKVNREAAAAPGPSTS 131
            ML++++KEH +  ++R+  QE RR+EA +A+ +LT +L D LNVGVAQAYLNQKRLDAEAKQLH  A NF +QT  WLQL DQF+  LK+LGD+E+WA+SIEGDM  ++  LE  +K +R    + G  TS
Sbjct:    1 MLTSMVKEHHKEQAKRKQEQEVRRKEAIEASNELTQSLVDTLNVGVAQAYLNQKRLDAEAKQLHLGATNFAKQTHQWLQLIDQFSTALKDLGDVENWARSIEGDMHTINQTLELAYKASRATQTSSGAGTS 131
[Close]
BLAST of conserved hypothetical protein vs. SwissProt
Match: gi|123914811|sp|Q0VFD8.1|BL1S1_XENTR (RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 1; Short=BLOC-1 subunit 1)

HSP 1 Score: 147.902 bits (372), Expect = 6.085e-46
Identity = 66/117 (56.41%), Postives = 89/117 (76.07%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHK 117
            MLS LLKEH  + ++R+  QE+RR++A  AA  LT AL DHLNVGVAQAY+NQ++LD E K L T A  F +QT+ W+ L + FN  LKE+GD+E+WA+SIE DM++++TALEY +K
Sbjct:    1 MLSRLLKEHQGKQTERKEAQEKRRKDAIAAATTLTEALVDHLNVGVAQAYVNQRKLDHEVKTLQTQAAQFAKQTTQWISLVENFNQALKEIGDVENWARSIEKDMRIIATALEYVYK 117
[Close]
BLAST of conserved hypothetical protein vs. SwissProt
Match: gi|122136486|sp|Q2NKW0.1|BL1S1_BOVIN (RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 1; Short=BLOC-1 subunit 1 >gi|385178614|sp|D3ZKU7.1|BL1S1_RAT RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 1; Short=BLOC-1 subunit 1)

HSP 1 Score: 145.206 bits (365), Expect = 8.694e-45
Identity = 66/117 (56.41%), Postives = 87/117 (74.36%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHK 117
            MLS LLKEH  + ++R+ LQE+RR+EA  AA  LT AL DHLNVGVAQAY+NQ++LD E K L   A  F +QT  W+ + + FN  LKE+GD+E+WA+SIE DM+ ++TALEY +K
Sbjct:    1 MLSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 117
[Close]
BLAST of conserved hypothetical protein vs. SwissProt
Match: gi|332278161|sp|P78537.2|BL1S1_HUMAN (RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 1; Short=BLOC-1 subunit 1; AltName: Full=GCN5-like protein 1; AltName: Full=Protein RT14 >gi|332278162|sp|Q5R7L8.2|BL1S1_PONAB RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 1; Short=BLOC-1 subunit 1)

HSP 1 Score: 145.976 bits (367), Expect = 9.029e-45
Identity = 66/117 (56.41%), Postives = 87/117 (74.36%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHK 117
            MLS LLKEH  + ++R+ LQE+RR+EA  AA  LT AL DHLNVGVAQAY+NQ++LD E K L   A  F +QT  W+ + + FN  LKE+GD+E+WA+SIE DM+ ++TALEY +K
Sbjct:   29 MLSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 145
[Close]
BLAST of conserved hypothetical protein vs. SwissProt
Match: gi|57015283|sp|O55102.2|BL1S1_MOUSE (RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 1; Short=BLOC-1 subunit 1; AltName: Full=GCN5-like protein 1)

HSP 1 Score: 144.821 bits (364), Expect = 1.106e-44
Identity = 66/117 (56.41%), Postives = 87/117 (74.36%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHK 117
            MLS LLKEH  + ++R+ LQE+RR+EA  AA  LT AL DHLNVGVAQAY+NQ++LD E K L   A  F +QT  W+ + + FN  LKE+GD+E+WA+SIE DM+ ++TALEY +K
Sbjct:    1 MLSRLLKEHQAKQNERKELQEKRRREAIAAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 117
[Close]
BLAST of conserved hypothetical protein vs. SwissProt
Match: gi|3025257|sp|Q22616.1|BL1S1_CAEEL (RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 1; Short=BLOC-1 subunit 1)

HSP 1 Score: 115.546 bits (288), Expect = 4.346e-33
Identity = 56/125 (44.80%), Postives = 81/125 (64.80%), Query Frame = 0 
Query:    5 LLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHKVNREAAAAPGPS 129
            +LKEHS++   RR +QE+ + EA  AA  L++A+ DHLN  VAQAY NQKRLD EAK+   ++    +QT  WL + +  N+ LKE+GD+E+W+K+IE DMK+++  L   +    EA   P P 
Sbjct:    1 MLKEHSKKQHLRREVQEKLKNEAIVAAQTLSTAVVDHLNAKVAQAYGNQKRLDVEAKRFENNSAALAKQTEQWLFITEGLNYALKEIGDVENWSKTIENDMKIITETLRRAY----EAKNPPLPP 121
[Close]
BLAST of conserved hypothetical protein vs. SwissProt
Match: gi|74856005|sp|Q54VX7.1|BL1S1_DICDI (RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 1; Short=BLOC-1 subunit 1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.006e-26
Identity = 44/116 (37.93%), Postives = 74/116 (63.79%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTH 116
            MLS L+K+H    ++ +   E  ++EA  +   +T+ L D +N GVA  + NQK+L+ EA+ L  +   F +QT+ W+ L + FN++LKE+GD+E+W+K IE DM  +S  +E+ +
Sbjct:    1 MLSKLVKDHQTHQNKLKEENEVLKKEAIASMGVVTNGLIDSVNTGVACIFANQKKLETEARLLQANTAKFSKQTNQWIHLIENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLY 116
[Close]
BLAST of conserved hypothetical protein vs. SwissProt
Match: gi|3024583|sp|O22929.1|BL1S1_ARATH (RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 1; Short=BLOC-1 subunit 1; AltName: Full=GCN5-like protein 1; AltName: Full=Protein RT14 homolog)

HSP 1 Score: 77.411 bits (189), Expect = 6.108e-18
Identity = 38/113 (33.63%), Postives = 65/113 (57.52%), Query Frame = 0 
Query:    5 LLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHK 117
            L+ ++ + S Q R   ER R+EA + AA+    L   +N GV + ++N+KR+++E + L      F +QT  WL +    N  +KE+GD E+W K++E D K ++ A+   H+
Sbjct:   37 LIDDNRRSSLQLREKTERSRKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHAVNSAVKEIGDFENWMKTMEFDCKKITAAIRNIHE 149
[Close]
BLAST of conserved hypothetical protein vs. nr
Match: gi|817212956|ref|XP_012282681.1| (biogenesis of lysosome-related organelles complex 1 subunit 1 [Orussus abietinus])

HSP 1 Score: 157.918 bits (398), Expect = 2.918e-47
Identity = 74/131 (56.49%), Postives = 101/131 (77.10%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHKVNREAAAAPGPSTS 131
            MLS ++KEH  + + R+  QE++R+EA +AA +LT AL DHLNVGVAQAYLNQK+LDAEAKQL   A NF +QT +WL L + F+  LKE+GD E+WA+SIEGDM++++TALE ++K  +E   +P PST+
Sbjct:    1 MLSAIVKEHQSKQAARKERQEQKRKEAIEAANKLTQALVDHLNVGVAQAYLNQKKLDAEAKQLQHSATNFAKQTQSWLNLVESFSSALKEIGDAENWARSIEGDMRIIATALENSYKATQE---SPAPSTA 128
[Close]
BLAST of conserved hypothetical protein vs. nr
Match: gi|668451654|gb|KFB40710.1| (AGAP001887-PA-like protein [Anopheles sinensis])

HSP 1 Score: 157.147 bits (396), Expect = 3.668e-47
Identity = 73/121 (60.33%), Postives = 94/121 (77.69%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHKVNRE 121
            MLS ++K+H  + + ++  QERRR+EA  +A +LT  L DHLNVGVAQAYLNQKRLDAEAKQLH  A NF +QTS WL L + FN +LKE+GD+E+WAK+IE DM V++TALE  +K +RE
Sbjct:    1 MLSAMIKDHQAKQAAKKEEQERRRKEAIMSANELTQNLVDHLNVGVAQAYLNQKRLDAEAKQLHVGATNFAKQTSQWLALIENFNGSLKEIGDVENWAKTIENDMNVITTALEIAYKTSRE 121
[Close]
BLAST of conserved hypothetical protein vs. nr
Match: gi|1061123074|ref|XP_017886969.1| (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Ceratina calcarata])

HSP 1 Score: 157.532 bits (397), Expect = 3.996e-47
Identity = 75/129 (58.14%), Postives = 98/129 (75.97%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHKVNREAAAAPGPS 129
            MLS ++KEH  + + R+  QE++R+EA QAA+ LT AL DHLNVGVAQAYLNQK+LDAEAKQL   A NF +QT +WL L + F+  LKE+GD E+WA+SIEGDM+ ++TALEY++K  +E     GPS
Sbjct:    1 MLSAIIKEHQGKQAARKERQEQKRKEAVQAASNLTQALVDHLNVGVAQAYLNQKKLDAEAKQLQHSATNFAKQTQSWLNLVEAFSSALKEIGDAENWARSIEGDMRTIATALEYSYKATQE---TQGPS 126
[Close]
BLAST of conserved hypothetical protein vs. nr
Match: gi|158301499|ref|XP_321175.4| (AGAP001887-PA [Anopheles gambiae str. PEST] >gi|157012501|gb|EAA01678.4| AGAP001887-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 157.147 bits (396), Expect = 4.370e-47
Identity = 73/121 (60.33%), Postives = 94/121 (77.69%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHKVNRE 121
            MLS ++K+H  + + ++  QERRR+EA  +A +LT  L DHLNVGVAQAYLNQKRLDAEAKQLH  A NF +QTS WL L + FN +LKE+GD+E+WAK+IE DM V++TALE  +K +RE
Sbjct:    1 MLSAMIKDHQAKQAAKKEDQERRRKEAIMSANELTQNLVDHLNVGVAQAYLNQKRLDAEAKQLHVGATNFAKQTSQWLALIENFNGSLKEIGDVENWAKTIENDMNVITTALEIAYKTSRE 121
[Close]
BLAST of conserved hypothetical protein vs. nr
Match: gi|936700078|ref|XP_014228007.1| (biogenesis of lysosome-related organelles complex 1 subunit 1 [Trichogramma pretiosum])

HSP 1 Score: 157.147 bits (396), Expect = 5.516e-47
Identity = 75/131 (57.25%), Postives = 98/131 (74.81%), Query Frame = 0 
Query:    1 MLSNLLKEHSQRSSQRRALQERRRQEACQAAAQLTSALTDHLNVGVAQAYLNQKRLDAEAKQLHTHANNFVQQTSAWLQLADQFNHTLKELGDIESWAKSIEGDMKVVSTALEYTHKVNREAAAAPGPSTS 131
            MLS ++KEH  + S R+  QE++R+EA QAA  LT AL DHLNVGVAQAYLNQK+LDAEAKQL   A NF +QT +WL L +  +  LKE+GD+E+WA+SIEGDM+ V+TALEY++K  ++      P+TS
Sbjct:    1 MLSTIVKEHQNKQSSRKEKQEQKRKEAVQAANNLTQALVDHLNVGVAQAYLNQKKLDAEAKQLQVSATNFAKQTQSWLLLVESISSALKEIGDVENWARSIEGDMRTVATALEYSYKATQDV----RPNTS 127
The following BLAST results are available for this feature:
BLAST of conserved hypothetical protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000000557.551e-4550.00supercontig:LSalAtl2s:LSalAtl2s100:140007:140375:1... [more]
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BLAST of conserved hypothetical protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
gi|426023994|sp|A1Z9S1.2|BL1S1_DROME1.200e-4755.73RecName: Full=Biogenesis of lysosome-related organ... [more]
gi|123914811|sp|Q0VFD8.1|BL1S1_XENTR6.085e-4656.41RecName: Full=Biogenesis of lysosome-related organ... [more]
gi|122136486|sp|Q2NKW0.1|BL1S1_BOVIN8.694e-4556.41RecName: Full=Biogenesis of lysosome-related organ... [more]
gi|332278161|sp|P78537.2|BL1S1_HUMAN9.029e-4556.41RecName: Full=Biogenesis of lysosome-related organ... [more]
gi|57015283|sp|O55102.2|BL1S1_MOUSE1.106e-4456.41RecName: Full=Biogenesis of lysosome-related organ... [more]
gi|3025257|sp|Q22616.1|BL1S1_CAEEL4.346e-3344.80RecName: Full=Biogenesis of lysosome-related organ... [more]
gi|74856005|sp|Q54VX7.1|BL1S1_DICDI4.006e-2637.93RecName: Full=Biogenesis of lysosome-related organ... [more]
gi|3024583|sp|O22929.1|BL1S1_ARATH6.108e-1833.63RecName: Full=Biogenesis of lysosome-related organ... [more]
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BLAST of conserved hypothetical protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|817212956|ref|XP_012282681.1|2.918e-4756.49biogenesis of lysosome-related organelles complex ... [more]
gi|668451654|gb|KFB40710.1|3.668e-4760.33AGAP001887-PA-like protein [Anopheles sinensis][more]
gi|1061123074|ref|XP_017886969.1|3.996e-4758.14PREDICTED: biogenesis of lysosome-related organell... [more]
gi|158301499|ref|XP_321175.4|4.370e-4760.33AGAP001887-PA [Anopheles gambiae str. PEST] >gi|15... [more]
gi|936700078|ref|XP_014228007.1|5.516e-4757.25biogenesis of lysosome-related organelles complex ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold632_size121914supercontigscaffold632_size121914:10045..10440 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold632_size121914-processed-gene-0.11-mRNA-1snap_masked-scaffold632_size121914-processed-gene-0.11-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold632_size121914:10045..10440-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold632_size121914-processed-gene-0.11 ID=snap_masked-scaffold632_size121914-processed-gene-0.11|Name=conserved hypothetical protein|organism=Tigriopus kingsejongensis|type=gene|length=396bp|location=Sequence derived from alignment at scaffold632_size121914:10045..10440- (Tigriopus kingsejongensis)
ATGCTCTCGAACTTATTGAAGGAACACTCGCAGCGTTCGAGTCAGCGTCG
AGCCCTGCAAGAGCGTCGACGGCAGGAGGCGTGTCAAGCGGCGGCTCAGC
TCACCTCCGCCCTCACCGATCATCTCAACGTGGGCGTGGCCCAGGCCTAC
CTCAACCAGAAGCGTTTGGACGCCGAGGCCAAGCAGCTCCACACTCACGC
CAACAACTTTGTCCAGCAGACGTCGGCTTGGCTCCAGTTGGCCGATCAGT
TCAACCACACGCTCAAGGAGTTGGGGGACATCGAGTCCTGGGCCAAGTCC
ATCGAGGGGGACATGAAAGTCGTCTCCACGGCCCTTGAGTACACCCACAA
GGTCAATAGGGAGGCAGCTGCCGCTCCGGGCCCATCCACCTCGTAG
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Synonyms
The feature 'conserved hypothetical protein' has the following synonyms
Synonym
Tk02606
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