uncharacterized protein LOC100162417, snap_masked-scaffold645_size120276-processed-gene-0.2 (gene) Tigriopus kingsejongensis

Overview
Nameuncharacterized protein LOC100162417
Unique Namesnap_masked-scaffold645_size120276-processed-gene-0.2
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of uncharacterized protein LOC100162417 vs. L. salmonis genes
Match: EMLSAG00000002424 (supercontig:LSalAtl2s:LSalAtl2s145:98262:104743:1 gene:EMLSAG00000002424 transcript:EMLSAT00000002424 description:"maker-LSalAtl2s145-augustus-gene-1.8")

HSP 1 Score: 67.3958 bits (163), Expect = 1.164e-12
Identity = 41/142 (28.87%), Postives = 75/142 (52.82%), Query Frame = 0 
Query:   13 WLEDSGAVQELRAQVRCRLIQGLRGRHRVSRPPTRAVGAPERALNHLVLEFLVNSGHWLSASVLASEAHFLSQLATESTDAPTQGGPSQPPALAKFPDSSLDLLFRWLRLPIPGASESLRTAYYREHRVSLLQVLLASLSSP 154
            WL  SG +QE ++++R  LI+ + G++   +         ++++N L++E+L+   +W SASVL SEA+FL Q   +       G  ++    ++  +  ++ + R+L L  P    S+RT Y  + + SLL   L +L  P
Sbjct:  552 WLTSSGKLQEFQSRLRTDLIEAIAGKNLRKKKKNIKESTFDQSVNSLIIEYLMIHSYWYSASVLVSEANFLVQ-PPDIEIVQKLGSETKRHTPSRISEEDINNILRFLNLD-PSIFNSIRTTYLNDSQESLLSATLINLKKP 691
The following BLAST results are available for this feature:
BLAST of uncharacterized protein LOC100162417 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000024241.164e-1228.87supercontig:LSalAtl2s:LSalAtl2s145:98262:104743:1 ... [more]
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BLAST of uncharacterized protein LOC100162417 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of uncharacterized protein LOC100162417 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold645_size120276supercontigscaffold645_size120276:35670..36620 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold645_size120276-processed-gene-0.2-mRNA-1snap_masked-scaffold645_size120276-processed-gene-0.2-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold645_size120276:35670..36620+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold645_size120276-processed-gene-0.2 ID=snap_masked-scaffold645_size120276-processed-gene-0.2|Name=uncharacterized protein LOC100162417|organism=Tigriopus kingsejongensis|type=gene|length=951bp|location=Sequence derived from alignment at scaffold645_size120276:35670..36620+ (Tigriopus kingsejongensis)
ATGGAGGCCGACCAGTTCCGTGAGGCCATGCTGGGTTGGCTGGAGGACAG
TGGGGCGGTCCAGGAGCTCCGAGCCCAGGTTCGATGCCGACTGATCCAGG
GACTGCGTGGGCGGCATCGGGTGAGTCGGCCACCCACTCGAGCCGTGGGC
GCGCCGGAACGAGCCCTCAACCACCTCGTGCTCGAGTTTCTCGTCAACTC
CGGCCATTGGCTGTCGGCCTCGGTCTTGGCCAGCGAGGCCCACTTCCTCA
GCCAGCTGGCCACGGAGTCGACGGACGCTCCCACTCAGGGTGGACCCAGC
CAGCCCCCCGCCCTAGCCAAGTTCCCGGACTCGAGCTTGGATCTTCTGTT
TCGATGGCTGCGACTCCCGATACCCGGGGCGAGCGAAAGCCTCCGTACGG
CCTATTATCGGGAACACAGGGTGTCGCTCCTCCAGGTCCTCCTGGCCTCA
CTGAGCTCGCCGGCTGGCCTGAGCCGAAGCCCTGATGCAAATTGGGCCCA
CGATCAGCGGCGACCGAGTCCGGCTCGGGGGGCTGGATCCCATATGAAAG
ACAATCGACTCAAAGAGGCCCTCGAAGACAGCCTCACGAGCCAGCTGTCC
ACCCCCGAGTCGTCCGAAGCCGAAACGAGCCCGTCCGAGGCCAGTGTCGA
CTCGCGGGTCGCCAGCTTGACTCAACAGCTGGCAGTGGCTCATGAGGAAA
TCGAGCGACTGCACAAGACCCGGCAACAACTACAGCAATTCCAAACCACA
GTCGAGGCCCAGTCTCGGGCCTTGGAGCTTGACCGATGGTGCCTGGATTC
ACCCCAGCCGCCCCCCAACCGCGAACCCCTCGCTGAACCCGGTCCGGCCG
TGGGATCCACCTCCCTCGACCACTTCCTCAGTCAGACCCGCCAGAAAGTG
CGCGGTTTATATCTAAGTGGCGTCGATATCGACCAAGCCATCGTGCCTTA
G
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Synonyms
The feature 'uncharacterized protein LOC100162417' has the following synonyms
Synonym
Tk11123
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