carnitine dehydratase, snap_masked-scaffold6762_size3619-processed-gene-0.0 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of carnitine dehydratase vs. L. salmonis genes
Match: EMLSAG00000001226 (supercontig:LSalAtl2s:LSalAtl2s11:421277:423175:1 gene:EMLSAG00000001226 transcript:EMLSAT00000001226 description:"maker-LSalAtl2s11-augustus-gene-4.11") HSP 1 Score: 256.144 bits (653), Expect = 6.224e-80 Identity = 153/382 (40.05%), Postives = 212/382 (55.50%), Query Frame = 0 Query: 243 MELRWPDAVEFSGLGPAPLAGQLLADLGADVITVDRKAAPAEPTDINRRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDCPD---TLIYARMTGWGQD-GPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGV--SGKGQVVDAAMVDGVPAMMGLIHGMLAQGK-----WSETRGDNWLDGGAPFYRCY-TCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQ--NDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQFHPHMAARQTIIATDGVVQAAPAPRFSRT-APVSPPAPGAIGGETNQVL-AALGYSESEIAGIVGR 608 M L+ VE +GL AP +LAD GA VI VD D++ RGK+S+ L+LK +G + KL+ S V +E FRPGVME+L L PD +LIYAR++G+GQ+ P AGHDINY++L+GAL +G + PVPP+N+V D+GGG + GI++A+ ER V SGKGQ++D + G + L Q K W RG+N LD GA FY Y T G Y+SVG +EPQF+++LL+K L + Q DT +D++A F KTR EW IF DACV PVL+ E + + I+ G PAP+ SRT A +S P IG + ++L LG+++ EI ++ Sbjct: 1 MALKGVRVVEMAGLAXAPFTSMILADFGASVIRVDNHPDAVVYPDVSCRGKKSISLNLKSSKGRSIVKKLVNNSDVFLESFRPGVMEKLQLCPDVLTKENPSLIYARLSGYGQEHNPLTYRAGHDINYISLSGALSKIGRVNEKPVPPINIVGDFGGGGLTCAFGIIAALYERSVNSSGKGQIIDCGITQGA----SYLSTWLYQSKNIPHLWGNPRGENVLDTGAHFYEVYETKEPGKYISVGTVEPQFYSILLDKLELYPHEEYPQFGGDT---KKLKDIFASKFRTKTRKEWEEIFSNVDACVTPVLSIDEVSSN-ELTKNNFHISNSGESVPLPAPKLSRTPAQISTIEPLRIGEHSIEILRNTLGFTKGEIDNLISE 374
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|341940628|sp|O09174.4|AMACR_MOUSE (RecName: Full=Alpha-methylacyl-CoA racemase; AltName: Full=2-methylacyl-CoA racemase) HSP 1 Score: 308.916 bits (790), Expect = 9.139e-99 Identity = 169/368 (45.92%), Postives = 228/368 (61.96%), Query Frame = 0 Query: 243 MELRWPDAVEFSGLGPAPLAGQLLADLGADVITVDRKAAPAEPTDINRRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPD----DCPDTLIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQFHPHMAARQTIIATDG--VVQAAPAPRFSRTAPVSPPAPG--AIGGETNQVLAALGYSESEI 602 M LR VE +GL P P G +LAD GA+V+ V+R + E + RGKRS+ LDLKR +G+ ++ A + VL+E FR GVME+L LGP+ D P LIYAR++G+GQ G +++ AGHDINYLAL+G L +G + P PPLN++AD+GGG + LGI+ A+ ER SG+GQV+D++MV+G + + G W + RG N LDGGAPFY Y A G +++VGA+EPQF+ALLL+ GL Q + W + +A FA+KT+ EW IF+G+DACV PVLTF EA H H R + I TDG + PAP SRT P P A ++G T +VL G+S+ EI Sbjct: 1 MVLRGVRVVELAGLAPGPFCGMVLADFGAEVVRVNRLGSTGE--NFLARGKRSLALDLKRSQGVTVLRRMCARADVLLEPFRCGVMEKLQLGPETLLQDNPK-LIYARLSGFGQSGIFSKVAGHDINYLALSGVLSKIGRSGENPYPPLNLLADFGGGGLMCTLGIVLALFERTRSGRGQVIDSSMVEGTAYLSSFLWKTQPMGLWKQPRGQNILDGGAPFYTTYKTADGEFMAVGAIEPQFYALLLKGLGLESEELPSQMSSADWPEMKKKFADVFAKKTKAEWCQIFDGTDACVTPVLTFEEALHHQHNRERASFI-TDGEQLPSPRPAPLLSRT-PAVPSAKRDPSVGEHTVEVLREYGFSQEEI 363
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|13637497|sp|P70473.3|AMACR_RAT (RecName: Full=Alpha-methylacyl-CoA racemase; AltName: Full=2-arylpropionyl-CoA epimerase; AltName: Full=2-methylacyl-CoA racemase) HSP 1 Score: 305.834 bits (782), Expect = 1.517e-97 Identity = 171/368 (46.47%), Postives = 225/368 (61.14%), Query Frame = 0 Query: 243 MELRWPDAVEFSGLGPAPLAGQLLADLGADVITVDRKAAPAEPTDINRRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPD----DCPDTLIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQFHPHMAARQTIIATDGVVQAA--PAPRFSRTAPVSPPAPG--AIGGETNQVLAALGYSESEI 602 M LR +E +GL P P G +LAD GA+V+ VDR + P+ + R GKRS+ LDLKR G A ++ A + VL+E FR GVME+L LGP+ D P LIYAR++G+GQ G +++ AGHDINY+AL+G L +G + P PPLN++AD+GGG + LGIL A+ ER SG GQV+DA MV+G + + A G W++ RG N LDGGAPFY Y A G +++VGA+EPQF+ LLL+ GL Q W + +A FARKT+ EW IF+G+DACV PVLT EA H H R + I TD A PAP+ SRT P P A ++G T +VL G+S+ EI Sbjct: 1 MALRGVRVLELAGLAPGPFCGMILADFGAEVVLVDRLGSVNHPSHLAR-GKRSLALDLKRSPGAAVLRRMCARADVLLEPFRCGVMEKLQLGPETLRQDNPK-LIYARLSGFGQSGIFSKVAGHDINYVALSGVLSKIGRSGENPYPPLNLLADFGGGGLMCTLGILLALFERTRSGLGQVIDANMVEGTAYLSTFLWKTQAMGLWAQPRGQNLLDGGAPFYTTYKTADGEFMAVGAIEPQFYTLLLKGLGLESEELPSQMSIEDWPEMKKKFADVFARKTKAEWCQIFDGTDACVTPVLTLEEALHHQHNRERGSFI-TDEEQHACPRPAPQLSRT-PAVPSAKRDPSVGEHTVEVLKDYGFSQEEI 364
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|313104070|sp|Q9UHK6.2|AMACR_HUMAN (RecName: Full=Alpha-methylacyl-CoA racemase; AltName: Full=2-methylacyl-CoA racemase) HSP 1 Score: 289.271 bits (739), Expect = 4.451e-91 Identity = 161/368 (43.75%), Postives = 213/368 (57.88%), Query Frame = 0 Query: 243 MELRWPDAVEFSGLGPAPLAGQLLADLGADVITVDRKAAPAEPTDINR--RGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPD----DCPDTLIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQFHPHMAARQTIIATDGV-VQAAPAPRFSRTAPV-SPPAPGAIGGETNQVLAALGYSESEI 602 M L+ VE SGL P P +LAD GA V+ VDR P D++R RGKRS+VLDLK+P G A +L S VL+E FR GVME+L LGP+ + P LIYAR++G+GQ G + + AGHDINYLAL+G L +G + P PLN++AD+ GG + LGI+ A+ +R +GKGQV+DA MV+G + + W RG N LDGGAPFY Y A G +++VGA+EPQF+ LL++ GL +Q W + +A FA KT+ EW IF+G+DACV PVLTF E H H R + I ++ V PAP T + S IG T ++L G+S EI Sbjct: 1 MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDR---PGSRYDVSRLGRGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENP-RLIYARLSGFGQSGSFCRLAGHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMALFDRTRTGKGQVIDANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTADGEFMAVGAIEPQFYELLIKGLGLKSDELPNQMSMDDWPEMKKKFADVFAEKTKAEWCQIFDGTDACVTPVLTFEEVVHHDHNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEFGFSREEI 364
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|74620364|sp|Q8J0F0.1|CEFD2_ACRCH (RecName: Full=Isopenicillin N epimerase component 2; Short=IPN epimerase component 2; AltName: Full=Isopenicillin N epimerase acyl-CoA racemase component) HSP 1 Score: 227.639 bits (579), Expect = 1.508e-67 Identity = 124/300 (41.33%), Postives = 173/300 (57.67%), Query Frame = 0 Query: 251 VEFSGLGPAPLAGQLLADLGADVITVDRKAAPAEPTDINRRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDC----PDTLIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCA--CGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQ 544 VE +GL P P G LLAD GA V+ +D +P D+ R K S+ +DLK P +++ + VLI+ FRPGV+ERLGL P + L+ AR+TG+ +DG + AGHDINYLA++G L +G A P PP N++ D+ GG ++GIL A++ R +G GQVV+A MVDG + + W RG+N LDGG P+Y Y G Y++VGALEP F+ +L+ GL + + D +W R L+ FA +TR EWA +F+G+DACV PVL E + Sbjct: 15 VELAGLAPGPFCGMLLADYGASVLRIDGPRSPK--GDVLARNKSSICIDLKHPPSRKVLLSILSRADVLIDPFRPGVLERLGLSPTEVLLKANARLVVARLTGFRRDGKYQDMAGHDINYLAVSGVLAMLGRAGENPFPPANILGDFAGGGAMCVVGILLALVSRDATGLGQVVEANMVDGSAYLATMPRLATKTPFWGSPRGENVLDGGCPWYATYRTKDPGGKYMAVGALEPHFYEVLVRGLGLDKTDLPPREDRANWPRLRALFEAKFAERTRSEWAEVFDGTDACVTPVLEQGELE 312
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|29840845|sp|Q09618.3|YS74_CAEEL (RecName: Full=CaiB/baiF CoA-transferase family protein ZK892.4) HSP 1 Score: 187.193 bits (474), Expect = 9.735e-53 Identity = 118/326 (36.20%), Postives = 168/326 (51.53%), Query Frame = 0 Query: 251 VEFSGLGPAPLAGQLLADLGADVITVDRKAAPAEPTDINRRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDCPDT---LIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRA-PVPPLNMVADYGGGTMFLLLGILSAVIERGVSG-KGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSAR--RDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQFHPHMAARQTIIATDGVVQAAPAPR 569 VE +GL P P G +LAD GADV +D+K PA +NR GK LDLK PE + L S VL++ +RPG +E++GL P + LI +++G+GQ G +Q GHDINY+AL+G L + P PP NM+AD+ GG + GILSA+ R +G KG ++D +M +GV + + Q T G P YR Y +++VGA+EP+F+ L + + D D + DL ++ F +KTRD+WA IF+G + CV PVL E + R + T A P+PR Sbjct: 11 VEIAGLAPVPHCGMMLADFGADVTVIDKKN-PAIEQRLNR-GKTMKQLDLKNPEDIKKVRDLCQTSDVLLDPYRPGTLEKMGLDPSTLWNNNKGLIICKISGYGQTGRMSQETGHDINYVALSGMLPTFSGVNATRPWPPANMLADFAGGGLSAAFGILSAIYARSHNGGKGCLLDCSMTEGVAYLSSFVQHYYDQPNLF-TDKYALFSGECPIYRTYKTKDDKFVAVGAVEPKFYQNLFKLLNV------DGRDLFVNPGKITEDLESR-FLQKTRDKWANIFKGQECCVTPVLDIHEVGSYGQHVDRNSFTKTSSNWIANPSPR 326
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|71152392|sp|Q68FU4.1|SUCHY_RAT (RecName: Full=Succinate--hydroxymethylglutarate CoA-transferase; AltName: Full=SuccinylCoA:glutarate-CoA transferase; Flags: Precursor) HSP 1 Score: 119.398 bits (298), Expect = 1.103e-27 Identity = 104/375 (27.73%), Postives = 162/375 (43.20%), Query Frame = 0 Query: 260 PLAGQLLADLGADVITVDRKAAPAE-----PTDIN---------RRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDCPDT---LIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSA--RRDL---YAQAFARKTRDEWAAIFEGSDACVAPVLT----FSEAQ-FHPHMAARQTIIATDGVVQAAPAPRFSRTAPVSPPAPGAIGGETNQVLA-ALGYSESEIAGIV 606 P A L DLGA+VI V+R A + P +N R K+S+ +++K P G+ +L A V +E + PG + +GLG D ++Y +TG+GQ GP + AG+D A++G +H G D PV P + D G +F I++ +I+R +GKG +D ++ A + + G+ R P+ T GYL +GA Q A+L + LPE + T H R++L + FA + +W +FEGS P+ + FSEAQ H + + PA R+S+ P +G T +L L Y E I ++ Sbjct: 54 PFATMNLGDLGAEVIKVERPGAGDDTRSWGPPFVNTESTYFLSVNRNKKSIAVNIKDPRGVRIVKELAAICDVFVENYVPGKLSEMGLGYADIDKIAPHIVYCSITGYGQTGPMSHRAGYDAIASAMSGLMHITGPEDGDPVRPGVAMTDLATG-LFAYGAIMAGLIQRYRTGKGLFIDCNLLSSQVACLTQVAANYLIGQKEAKRWGTAHGSIVPYQAFKT--KDGYLVIGAGNNQQFAVLCKILNLPELIDDSKYRTNHLRVQNRKELVKILSARFAEEVTAKWLCLFEGSGIPYGPINSLKDVFSEAQVLHNGLVMEMNHPTVGKISVPGPAVRYSKFKMSEAKPPPLLGQHTRHILKEVLRYDEGVIGELL 425
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|408360016|sp|Q7TNE1.2|SUCHY_MOUSE (RecName: Full=Succinate--hydroxymethylglutarate CoA-transferase; AltName: Full=SuccinylCoA:glutarate-CoA transferase; Flags: Precursor) HSP 1 Score: 119.398 bits (298), Expect = 1.223e-27 Identity = 103/375 (27.47%), Postives = 163/375 (43.47%), Query Frame = 0 Query: 260 PLAGQLLADLGADVITVDRKAAPAE-----PTDIN---------RRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDCPDT---LIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSA--RRDL---YAQAFARKTRDEWAAIFEGSDACVAPVLT----FSEAQ-FHPHMAARQTIIATDGVVQAAPAPRFSRTAPVSPPAPGAIGGETNQVLA-ALGYSESEIAGIV 606 P A L DLGA+VI V+R A + P +N R K+S+ +++K P G+ +L A V +E + PG + +GLG +D +IY +TG+GQ GP + AG+D A++G +H G D PV P + D G +F I++ +++R +GKG +D ++ A + + G+ R P+ T GYL +GA Q A++ + LPE + T H R++L + FA + +W +FEGS P+ + FSEAQ H + + PA R+S+ P +G T +L L Y E I ++ Sbjct: 54 PFATMNLGDLGAEVIKVERPGAGDDTRSWGPPFVNTESTYFLSVNRNKKSIAVNIKDPRGVRIVKELAAICDVFVENYVPGKLSEMGLGYEDIDKIAPHIIYCSITGYGQTGPMSHRAGYDAIASAMSGLMHITGPEDGDPVRPGVAMTDLATG-LFAYGAIMAGLLQRYRTGKGLFIDCNLLSSQVACLTQVAANYLIGQKEAKRWGTAHGSIVPYQAFKT--KDGYLVIGAGNNQQFAVVCKILNLPELIDDCKYRTNHLRVQNRKELVKILSARFAEEVTAKWLCLFEGSGIPYGPINSLKDVFSEAQVLHNGLVMEMNHPTVGKISVPGPAVRYSKFKMSEAKPPPLLGQHTRHILKEVLRYDEGAIEKLL 425
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|667467185|sp|A9WGE3.1|SCCT_CHLAA (RecName: Full=Succinyl-CoA--D-citramalate CoA-transferase) HSP 1 Score: 111.309 bits (277), Expect = 3.903e-25 Identity = 115/385 (29.87%), Postives = 160/385 (41.56%), Query Frame = 0 Query: 251 VEFSGLGPAPLAGQLLADLGADVITVDR--KAAPAEPTDINR------------RGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDD---CPDTLIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMM-GLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPE--------AHQADQNDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQFHPHMAARQTIIATDG-----VVQAAPAPRFSRTAPVSPPAPGAIGGETNQVLA-ALGYSESEIA 603 +E P GQLLAD GA+VI V+ K P +R R K+S+ +DL+ PEG A +L+ +++E FRPG +E GLG ++ LI R++G+GQ GP+ AG A+ G G DR P + D T F LG L A+ +R SG+GQVVD + +GV A+M +I G E G N L AP Y A G + +GA L + G PE HQA H + DL A T D+ + + + T E PH ARQ+II + PR S T A+G ++ LG +E ++A Sbjct: 16 LELGAFLAGPFCGQLLADFGAEVIKVEPPGKGDPMREWGRHRYKGRTLWWPVLARNKKSITIDLRTPEGQALVKRLVPHVDMVLENFRPGTLEEWGLGWEELHALNPGLIMIRVSGFGQTGPYRDKAGFGSIGEAMGGIRAITGFPDRPPTRIGISIGDSLAAT-FAALGALVALHQRQRSGQGQVVDIGIYEGVLALMESMIPEYQLTGHIRERTG-NILPNVAP-SNIYPTADGSWFVIGANADTIFTRLAQAMGQPELATDPRFATHQARGE---HQAELDDLIAAWTLNYTADQLQVMMDEYGVPAGRIYTAKEMLSDPHFIARQSIIGVHDPDLGEIKMQNVVPRLSATPGGVDWTGPALGQHNREIFTDLLGLTEDDLA 394
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|71152390|sp|Q9HAC7.2|SUCHY_HUMAN (RecName: Full=Succinate--hydroxymethylglutarate CoA-transferase; AltName: Full=Dermal papilla-derived protein 13; AltName: Full=SuccinylCoA:glutarate-CoA transferase; Flags: Precursor) HSP 1 Score: 110.923 bits (276), Expect = 8.660e-25 Identity = 96/360 (26.67%), Postives = 156/360 (43.33%), Query Frame = 0 Query: 260 PLAGQLLADLGADVITVDRKAA---------PAEPTDIN-----RRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDCPDT---LIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSA--RRDL---YAQAFARKTRDEWAAIFEGSDACVAPVLT----FSEAQ-FHPHMAARQTIIATDGVVQAAPAPRFSRTAPVSPPAPGAIGGETNQVL 592 P A L DLGA+VI V+R A P T+ R K+S+ +++K P+G+ +L A V +E + PG + +GLG +D + +IY +TG+GQ GP +Q AG+D A++G +H G + PV P + D G ++ I++ +I++ +GKG +D ++ A + I G+ R P+ T GY+ VGA Q A + + LPE + T H R++L ++ F + +W +FEGS P+ F+E Q H + + PA R+S+ P +G T +L Sbjct: 63 PFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVNRNKKSIAVNIKDPKGVKIIKELAAVCDVFVENYVPGKLSAMGLGYEDIDEIAPHIIYCSITGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATG-LYAYGAIMAGLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTAHGSIVPYQAFKT--KDGYIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSERFEEELTSKWLYLFEGSGVPYGPINNMKNVFAEPQVLHNGLVMEMEHPTVGKISVPGPAVRYSKFKMSEARPPPLLGQHTTHIL 419
BLAST of carnitine dehydratase vs. SwissProt
Match: gi|667467188|sp|A9WC39.1|SMTB_CHLAA (RecName: Full=Succinyl-CoA--L-malate CoA-transferase beta subunit >gi|667467189|sp|Q1KLK0.1|SMTB_CHLAU RecName: Full=Succinyl-CoA--L-malate CoA-transferase beta subunit) HSP 1 Score: 98.2117 bits (243), Expect = 1.013e-20 Identity = 113/390 (28.97%), Postives = 168/390 (43.08%), Query Frame = 0 Query: 259 APLAGQLLADLGADVITVD---------RKAAPAEPTDI-----NRRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDCPDT---LIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPP-LNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLI---HGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPE--------------AHQADQNDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSE-AQF--HPHMAARQTIIATDG------VVQAAPAPRFSRTAPVSPPAPG-AIGGETNQVLAA-LGYSESEI 602 AP LL + GADV+ V+ R P D R KRSV L+L+ PEG +LIA S VL E FRPG +E+ GLG D LI R+TG+GQ GP+ G A+ G + G PV P +ADY G ++ +G+L A+ R +G+GQ +DAA+ + V + +GM K E G ++ + P + + G ++++ + A L G PE AH +D N+ V RD + + R A + E A P ++ A F H+ AR+ ++A D ++ P+ S T P S + G +G T +VL LG + +I Sbjct: 24 APFCATLLGEFGADVLKVEHPIGGDALRRFGTPTARGDTLTWLSESRNKRSVTLNLQHPEGARVFKELIAHSDVLCENFRPGTLEKWGLGWDVLSKINPRLIMLRVTGYGQTGPYRDRPGFARIAHAVGGIAYLAGMPKGTPVTPGSTTLADYMTG-LYGCIGVLLALRHREQTGRGQYIDAALYESVFRCSDELVPAYGMYR--KVRERHGSHYNEFACP-HGHFQTKDGKWVAISCATDKLFARLANAMGRPELASSSVYGDQKVRLAHASDVNEIV-----RD-WCSSLTR------AEVLERCYATATPAAPLNDIADFFGDRHVHARRNLVAIDAEDLGETLIMPNVVPKLSET-PGSIRSLGPKLGEHTEEVLKEILGMCDEQI 396
BLAST of carnitine dehydratase vs. nr
Match: gi|492449681|ref|WP_005848332.1| (CoA transferase [Sulfitobacter sp. EE-36] >gi|83845590|gb|EAP83468.1| L-carnitine dehydratase/bile acid-inducible protein F [Sulfitobacter sp. EE-36]) HSP 1 Score: 469.929 bits (1208), Expect = 2.728e-159 Identity = 236/351 (67.24%), Postives = 273/351 (77.78%), Query Frame = 0 Query: 245 LRWPDAVEFSGLGPAPLAGQLLADLGADVITVDRKAAPAEPTDINRRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDCPDTLIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQFHPHMAARQTIIATDGVVQAAPAPRFSRTAPVSPPAPGAIGGETNQVLAAL 595 L+ + +E +G+GP PLAGQLLADLGADVI +DR APA+ TD+NRRGKRSV LDLK EG + A LI +G++IEGFRPGVMERLGLGPDD +T+I+ R+TGWGQDGP +Q+AGHDINYL LTGAL AMG D P PPLN+VADYGGGTMFLLLGIL+AV ER SGKGQVVDAAMVDGV AMMGL H A+G WSE R N LDGGAPFYRCY ++SVG LEPQF ALLLEKAGLP H ADQND +W+ R +LYAQAFA KT+ EW+ IF G+DACVAPVL+ EA HPHMAARQT++ DGV+QAAPAPRFSR+ P P A+GG+T + AL Sbjct: 5 LKGLEVIEMAGIGPGPLAGQLLADLGADVIVIDRAEAPADKTDVNRRGKRSVFLDLKSEEGRSTAQALINRAGIVIEGFRPGVMERLGLGPDDLDETVIFGRITGWGQDGPLSQSAGHDINYLGLTGALAAMGTLDNPPPPPLNLVADYGGGTMFLLLGILAAVFERQTSGKGQVVDAAMVDGVSAMMGLFHTFKARGAWSENRASNLLDGGAPFYRCYRTKDDLFMSVGPLEPQFFALLLEKAGLPAEHSADQNDPSNWAERAELYAQAFASKTQAEWSGIFSGTDACVAPVLSMDEAASHPHMAARQTLVEVDGVLQAAPAPRFSRSKPTGINTPKAMGGDTAAIRRAL 355
BLAST of carnitine dehydratase vs. nr
Match: gi|1325755795|ref|WP_101656369.1| (CoA transferase [Amylibacter cionae] >gi|1320820641|gb|PLS21205.1| carnitine dehydratase [Amylibacter cionae]) HSP 1 Score: 469.159 bits (1206), Expect = 4.403e-159 Identity = 233/347 (67.15%), Postives = 274/347 (78.96%), Query Frame = 0 Query: 249 DAVEFSGLGPAPLAGQLLADLGADVITVDRKAAPAEPTDINRRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDCPDTLIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQFHPHMAARQTIIATDGVVQAAPAPRFSRTAPVSPPAPGAIGGETNQVLAAL 595 D +E +G+GP PLAGQLLADLGADVI +DR APA+ TD+NRRGKRSV LDLK EG + A LI +G++IEGFRPGVMERLGLGPDD +++I+ R+TGWGQDGP +Q+AGHDINYL LTGAL AMG+ + P PPLN+VADYGGGTMFLLLGIL+AV ER SGKGQVVDAAM+DGV AMMGL H A+G W+E R N LDGGAPFYRCY ++SVG LEPQF ALLL+KA LP H ADQND +W+ R +LYAQAFARKT+ EW+ IFEG+DACVAPVL+ +EA HPHMAARQT+ DGV+QAAPAPRFSR+ P P AIGG+T ++ AL Sbjct: 9 DVIEMAGIGPGPLAGQLLADLGADVIVIDRTEAPADKTDVNRRGKRSVCLDLKSEEGRSTAQTLINRAGIVIEGFRPGVMERLGLGPDDLDESVIFGRITGWGQDGPLSQSAGHDINYLGLTGALAAMGNVENPPPPPLNLVADYGGGTMFLLLGILAAVYERQTSGKGQVVDAAMIDGVSAMMGLFHTFKARGAWNENRASNLLDGGAPFYRCYRTKDDLFMSVGPLEPQFFALLLQKASLPAEHGADQNDPSNWAERAELYAQAFARKTQAEWSEIFEGTDACVAPVLSMTEAASHPHMAARQTLFEVDGVLQAAPAPRFSRSKPAGINTPRAIGGDTAEIRRAL 355
BLAST of carnitine dehydratase vs. nr
Match: gi|1124346372|ref|WP_074637517.1| (CoA transferase [Sulfitobacter pontiacus] >gi|1088906292|emb|SDX63998.1| alpha-methylacyl-CoA racemase [Sulfitobacter pontiacus]) HSP 1 Score: 466.848 bits (1200), Expect = 4.422e-158 Identity = 234/351 (66.67%), Postives = 271/351 (77.21%), Query Frame = 0 Query: 245 LRWPDAVEFSGLGPAPLAGQLLADLGADVITVDRKAAPAEPTDINRRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDCPDTLIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQFHPHMAARQTIIATDGVVQAAPAPRFSRTAPVSPPAPGAIGGETNQVLAAL 595 L+ + +E +G+GP PLAGQLLADLGADVI +DR APA+ TD+NRRGKRSV LDLK EG + A LI +G++IEGFRPGVMERLGLGPDD +T+I+ R+TGWGQDGP +Q+AGHDINYL LTGAL AMG D P PPLN+VADYGGGTMFLLLGIL+AV ER SGKGQVVDAAM+DGV AMMGL H A+G WSE R N LDGGAPFYRCY ++SVG LEPQF ALLLEKAGLP H DQND W+ R +LYAQAFA KT+ EW+ IF G+DACVAPVL+ EA HPHMAARQT++ DGV+QAAPAPRFSR+ P P A+GG+T + AL Sbjct: 5 LKGLEVIEMAGIGPGPLAGQLLADLGADVIVIDRAEAPADKTDVNRRGKRSVFLDLKSEEGRSTAQALINRAGIVIEGFRPGVMERLGLGPDDLDETVIFGRITGWGQDGPLSQSAGHDINYLGLTGALAAMGTVDNPPPPPLNLVADYGGGTMFLLLGILAAVFERQTSGKGQVVDAAMLDGVSAMMGLFHTFKARGAWSENRASNLLDGGAPFYRCYRTKDDLFMSVGPLEPQFFALLLEKAGLPAEHSVDQNDPATWAERAELYAQAFASKTQAEWSGIFSGTDACVAPVLSMDEAASHPHMAARQTLVEVDGVLQAAPAPRFSRSKPTGINTPKAMGGDTAAIRRAL 355
BLAST of carnitine dehydratase vs. nr
Match: gi|1369016277|ref|WP_106472301.1| (carnitine dehydratase [Thalassococcus sp. SH-1] >gi|1364832381|gb|AVO37983.1| carnitine dehydratase [Thalassococcus sp. SH-1]) HSP 1 Score: 463.381 bits (1191), Expect = 1.113e-156 Identity = 224/355 (63.10%), Postives = 271/355 (76.34%), Query Frame = 0 Query: 251 VEFSGLGPAPLAGQLLADLGADVITVDRKAAPAEPTDINRRGKRSVVLDLKRPEGLAAAHKLIAASGVLIEGFRPGVMERLGLGPDDCPDTLIYARMTGWGQDGPWAQTAGHDINYLALTGALHAMGDADRAPVPPLNMVADYGGGTMFLLLGILSAVIERGVSGKGQVVDAAMVDGVPAMMGLIHGMLAQGKWSETRGDNWLDGGAPFYRCYTCACGGYLSVGALEPQFHALLLEKAGLPEAHQADQNDTVHWSARRDLYAQAFARKTRDEWAAIFEGSDACVAPVLTFSEAQFHPHMAARQTIIATDGVVQAAPAPRFSRTAPVSPPAPGAIGGETNQVLAALGYSESEIAGI 605 +E G+GP PLAGQLLADLGADV+ + R + PA+PTDIN RGKRS+ L+LK P G+ A LI + VL+EGFRPGVMERLGLGPDDCP +L+YARMTGWGQ+GP +QTAGHDINYL LTG L+A G A P PP+N+ ADYGGGTMFLL GIL+A+ ER SG+GQVVDAAMVDG A+MGL+H +A+G+WSE R N LDGGAPFYR Y CA G +++VG LEPQF A L+ A LP H Q DT W RRD YA+ F+RKTRDEWAAIF+G+DAC PVL++SEA HPH+AAR T I+T+GV Q+APAPRFSR+ P +P P A GG+ +L+ GY +EIA + Sbjct: 11 IEMQGIGPVPLAGQLLADLGADVVLITRASGPADPTDINNRGKRSIALNLKAPGGIEVARTLITRADVLMEGFRPGVMERLGLGPDDCPRSLVYARMTGWGQEGPLSQTAGHDINYLGLTGFLNATGRAGDVPTPPINIAADYGGGTMFLLFGILAALYERQNSGEGQVVDAAMVDGAAALMGLVHSFIARGQWSEQREANLLDGGAPFYRTYECADGRFIAVGPLEPQFFAELVRLADLPGDHVTTQMDTGRWPERRDDYARVFSRKTRDEWAAIFDGTDACATPVLSWSEAPRHPHLAARGTFISTEGVTQSAPAPRFSRSQPETPKTPAAPGGDGEAILSETGYGAAEIAAL 365
BLAST of carnitine dehydratase vs. nr
Match: gi|1055627608|ref|WP_067268196.1| (hypothetical protein [Sulfitobacter sp. HI0054] >gi|1024541098|gb|KZY49282.1| hypothetical protein A3734_11300 [Sulfitobacter sp. HI0054]) HSP 1 Score: 460.685 bits (1184), Expect = 2.516e-156 Identity = 214/248 (86.29%), Postives = 233/248 (93.95%), Query Frame = 0 Query: 1 MPEMVPLYEELCELAGGGDHAARFLSFYTPPPYLASCSQAVWGGKQPVLVRNYDYNPRAFYSLVLRTKWMGRAVMGTSDGLWGLVDGVNDKGLSISLTFGGRRVVGEGFGVPLILRYVLQTCETAEHAGEVLARVPTHMSYNVTVLDRKRTYLTVMMSPDRPAIVTNAAVATNHQENVEWISHARFTSTVERERFLLQRLRLHRDPEEKFINAFLRPPLYSTAFRHGFGTLYTAVYRPRKQEMELRWP 248 MPEM+PLY++LC LAGGGDHAARFLSFY PPPYL++CSQA+W GK+PV+VRNYDYNP AF ++VLRT W GR VMGTSDGLWGLVDGVND GLSISLTFGGRRVVGEGFGVPLILRYVLQTCETA+ AGEVLARVPTHMSYNVTVLDRKR+YLT MM+PDRPA++T AAVATNHQENVEWISHARFT+TVERER+LLQRLRLHRDPEEKFI AFL+PPLYSTAF GFGTLYTAVYRPRK+EMELRWP Sbjct: 52 MPEMLPLYDQLCSLAGGGDHAARFLSFYCPPPYLSACSQAIWAGKEPVMVRNYDYNPNAFDAMVLRTGWQGRQVMGTSDGLWGLVDGVNDAGLSISLTFGGRRVVGEGFGVPLILRYVLQTCETAQEAGEVLARVPTHMSYNVTVLDRKRSYLTAMMAPDRPAVITRAAVATNHQENVEWISHARFTATVERERYLLQRLRLHRDPEEKFIGAFLKPPLYSTAFNAGFGTLYTAVYRPRKREMELRWP 299 The following BLAST results are available for this feature:
BLAST of carnitine dehydratase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of carnitine dehydratase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
Pagesback to top
BLAST of carnitine dehydratase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold6762_size3619:318..2242+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold6762_size3619-processed-gene-0.0 ID=snap_masked-scaffold6762_size3619-processed-gene-0.0|Name=carnitine dehydratase|organism=Tigriopus kingsejongensis|type=gene|length=1925bp|location=Sequence derived from alignment at scaffold6762_size3619:318..2242+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'carnitine dehydratase' has the following synonyms
Add to Basket
|