gaba-gated ion partial, snap_masked-scaffold691_size110934-processed-gene-0.2 (gene) Tigriopus kingsejongensis

Overview
Namegaba-gated ion partial
Unique Namesnap_masked-scaffold691_size110934-processed-gene-0.2
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of gaba-gated ion partial vs. L. salmonis genes
Match: EMLSAG00000009137 (supercontig:LSalAtl2s:LSalAtl2s575:53505:62115:1 gene:EMLSAG00000009137 transcript:EMLSAT00000009137 description:"maker-LSalAtl2s575-augustus-gene-0.8")

HSP 1 Score: 83.1889 bits (204), Expect = 4.032e-17
Identity = 68/287 (23.69%), Postives = 122/287 (42.51%), Query Frame = 0 
Query:   94 ISSILDTL-FNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQF----------LNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWS-----VKP-LSMDQLGLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVL-SVVTIGFGGKSKPQVGYA 362
            +S  L+ L F+  Y     P     PL V +++ +R++  V+E+  + +++   R  W D R+   N        +W F            K W PD F    K + + K  +    +R   +  +  S R+     CQMD  K+P D Q C + + S+    D++   W      + P +++DQ     Y         Y+   D  + S +++  + +R   ++V+Q +IP  + V+  W++ +L   A    IP R  +   S+L S+        S PQV Y+
Sbjct:   21 VSGRLNQLKFSKDYSVMEGPHNKGSPLHVNISINLRNIFEVNEKLSLITVETSIRMIWQDPRIYPTNNG-----SDWDFDFITFNGKIVKRKFWIPDVFIDGAKNARIPKYHLQPMSLRYYKNRNLRLSLRINFDVICQMDFHKYPNDEQLCDIPLESWDTSMDDMKLNWDLSNSVINPNITLDQFSPLIY------FKKYDTQSDMTSYSGLIIRIQLQRLIPYHVIQTFIPSIVFVILGWISLFLDPQA----IPGRVKMVMLSLLTSLAMFNSVRDSTPQVSYS 292
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BLAST of gaba-gated ion partial vs. L. salmonis genes
Match: EMLSAG00000009825 (supercontig:LSalAtl2s:LSalAtl2s639:669883:722715:1 gene:EMLSAG00000009825 transcript:EMLSAT00000009825 description:"augustus_masked-LSalAtl2s639-processed-gene-6.2")

HSP 1 Score: 72.4034 bits (176), Expect = 8.120e-16
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 0 
Query:  118 PLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNK-IWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQR 213
            P EV   + IRS G + E+   + +D Y RQ+W D RL +N      L +N   L K IW+P+ +F N K      +TVPN  +RI PDG+I Y  R
Sbjct:   16 PTEVGCELFIRSFGSISEKTMDYQVDLYLRQHWEDPRLNHNAIE-EALDLNDPTLVKAIWKPEVYFPNAKEGEFQYVTVPNVLLRIKPDGKILYMLR 111
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BLAST of gaba-gated ion partial vs. L. salmonis genes
Match: EMLSAG00000001113 (supercontig:LSalAtl2s:LSalAtl2s1186:160345:169896:1 gene:EMLSAG00000001113 transcript:EMLSAT00000001113 description:"maker-LSalAtl2s1186-snap-gene-1.38")

HSP 1 Score: 75.485 bits (184), Expect = 9.426e-15
Identity = 73/316 (23.10%), Postives = 133/316 (42.09%), Query Frame = 0 
Query:  104 SGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRY----------------NNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRF--IRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIY----KWSVKPLSMDQLGL---AQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTS------LGASSVLSVVTIGFGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNF 388
            S +D  ++  V    + +++   +R    ++++    +   YF   W + R+                  NN  +  +PM+ +F+  +W PD F ++ K   +  M V N+   + I  D  I YSQ   I   C M   KFPLDTQ C  ++GS  +D  ++ +         P + + + L    Q  +++     + G     N S         R    Y++  Y+P  L V+ SW++F +        IP R +      L   ++ + VT      + P+    TA++ +++ C L VF AL+E+  + F
Sbjct:   72 SKFDLPVKKGVNHITVSIDIAEVLR----INDKDYSITFSGYFNVKWQESRIELSPDFGEEVAGPGVNTTNNPNIV-VPMSTEFVKDVWMPDIFIYSLKTYKV--MDVLNKLAGLWIGADKTILYSQATHITFICPMRFDKFPLDTQVCKFQVGSCSYDDTKMRFMTENAGYQSPKTANSIALDYDIQIKMLSKEDQVFLG-GGLGNFSLAGFELVLHRYVSTYIITYYLPSGLFVIVSWISFLIPMDV----IPGRMALLVTLFLVLVNIFNTVT-----TNTPKAEGLTAIEAWMLACILFVFGALIEYXAILF 370
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BLAST of gaba-gated ion partial vs. L. salmonis genes
Match: EMLSAG00000007263 (supercontig:LSalAtl2s:LSalAtl2s408:502144:561240:1 gene:EMLSAG00000007263 transcript:EMLSAT00000007263 description:"maker-LSalAtl2s408-augustus-gene-5.30")

HSP 1 Score: 75.0998 bits (183), Expect = 1.387e-14
Identity = 58/251 (23.11%), Postives = 110/251 (43.82%), Query Frame = 0 
Query:  105 GYDHQIRP-RVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEI---IYKWSVKPLSMDQLGLAQYNLINWTHGTYNGM----------DDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGAS 341
            GY+  IRP +  +Q +EV   +A   +  V+E+ QI   + + R  W D++L+++      + +     +K+W+PD   FN            N  + I PDG + +      ++ C +D+  FP D Q C ++ GS+    D++   +Y       + D + L+ Y    W  GT++ +          D     + +  +    R++ FY + + +P  LI     + F+L      +E   + +LG S
Sbjct:   37 GYNKLIRPVQNMTQKVEVAFGLAFIQLINVNEKNQIMKSNVWLRFVWNDYQLQWDEADYGGISVLRLPPDKVWKPDIVLFNNADGNYEVRYKSN--VLIYPDGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFTGDQVSLTLYN------NKDYVDLSDY----WKSGTWDIIEVPAYLNIHNDTLPTETDISFYITIRRKTLFYTVNLILPTVLISFLCVLVFYL-----PAEAGEKVTLGIS 270
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BLAST of gaba-gated ion partial vs. L. salmonis genes
Match: EMLSAG00000003314 (supercontig:LSalAtl2s:LSalAtl2s181:427820:487404:-1 gene:EMLSAG00000003314 transcript:EMLSAT00000003314 description:"augustus_masked-LSalAtl2s181-processed-gene-4.3")

HSP 1 Score: 73.9442 bits (180), Expect = 2.218e-14
Identity = 64/280 (22.86%), Postives = 123/280 (43.93%), Query Frame = 0 
Query:  121 VEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLREL-----------PMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWS-VKPLSMDQLGLAQYNLINWTHGTYNG-MDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTI-GFGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFL 386
            V V + I+ +  +D++    +++ +F   W D RL  +  ++ ++           P++  F+ + W PD    N K      +      + +  +  I Y+    I   C M    FPLD Q C  ++GSF +D  ++++    +   S  +  L  +  I      Y   +  + N S        +R+   Y++  Y+P  + V+ SW++F +        +P R +L  +  L +V I      + P+    TA++ ++I+C L VF AL+E+A L
Sbjct:   87 VNVGIDIKDIPKIDDKDFSITLNSFFVVRWKDERLIIDQKKMDKIFKKGEDADSWIPVDVSFIKEFWLPDAEILNLKEFKTLDVLSKLEGLWLNRNFEIMYAVATRITFICPMTFNSFPLDVQVCRFQVGSFNYDISKMVFHDEFIADQSQIRSVLDYFIEIRKLPDEYQHYVALTGNYSVAGFELTLQRKVSHYIITYYLPSGMFVIVSWISFLVPPDI----VPGRMTLLVTVFLVLVNIFNTITTNIPKAEGLTAIEAWVIVCVLFVFGALIEYAGL 362
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BLAST of gaba-gated ion partial vs. SwissProt
Match: gi|126302548|sp|Q16445.2|GBRA6_HUMAN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor)

HSP 1 Score: 240.736 bits (613), Expect = 1.388e-72
Identity = 126/318 (39.62%), Postives = 190/318 (59.75%), Query Frame = 0 
Query:   91 SKQISSILDTLFNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKPLSMDQL-----GLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGK-SKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTL-VRRLKRKDK 401
            S+ +S ILD L   GYD+++RP  G    EV+ ++ + S GPV + +  ++MD +FRQ WTD RL++       L +N   ++KIW PDTFF NGK+S  H MT PN+  RI  +G I Y+ RLTI A C M L  FP+D   CPL+ GS+ +   EIIY W   PL   ++      L QY+LI  T  +     ++     + ++F  +R+ G++++QIY P  + V+ S V+FW+ K +    +PART  G ++VL++ T+    + S P+V YATA+D FI +CF  VF+AL+EFA +N+   L  ++ KRK +
Sbjct:   29 SENVSRILDNLLE-GYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFGGPT-EILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKES----VPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQTQKAKRKAQ 340
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BLAST of gaba-gated ion partial vs. SwissProt
Match: gi|143811394|sp|P20237.2|GBRA4_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-4; AltName: Full=GABA(A) receptor subunit alpha-4; Flags: Precursor)

HSP 1 Score: 243.432 bits (620), Expect = 1.560e-72
Identity = 137/400 (34.25%), Postives = 221/400 (55.25%), Query Frame = 0 
Query:   82 QPFRNERE---LSKQISSILDTLFNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKP-----LSMDQLGLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGK-SKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVRRLKRKDKDCKLVMLMAQHDVMHGRMPQLPERQESTVMDTDGICTDEDILTPPDSTTPSRDDVFNFNGRPCELMRALEE 472
             P +N++E     +  + ILD+L + GYD+++RP  G    EV+ ++ + S GPV + +  ++MD +FRQ W D RL+Y+   +  L +N   + K+W PDTFF NGK+S  H MT PN+  RI  +G I Y+ RLTI A C M L  FP+D   CPL+ GS+ +   E+IY W+  P     +  +   L QY+LI  T  +      +     + ++F   R+ G++++Q YIP  + V+ S V+FW+ K +    +PART  G ++VL++ T+    + S P+V YATA+D FI +CF  VF+AL+EFA +N+  T V+  K K K  K    ++   V+  + P+ P +  +  +    +    + L   +S   SR DV N + +   +++   E
Sbjct:   33 SPGQNQKEEKLCPENFTRILDSLLD-GYDNRLRPGFGGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYDGP-IEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKES----VPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYF-TNVQMEKAKRKTSKAPQEISAAPVLREKHPETPLQNTNANLS---MRKRANALVHSESDVGSRTDVGNHSSKSSTVVQGSSE 422
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BLAST of gaba-gated ion partial vs. SwissProt
Match: gi|120784|sp|P22300.1|GBRG2_BOVIN (RecName: Full=Gamma-aminobutyric acid receptor subunit gamma-2; AltName: Full=GABA(A) receptor subunit gamma-2; Flags: Precursor)

HSP 1 Score: 239.58 bits (610), Expect = 6.365e-72
Identity = 120/300 (40.00%), Postives = 189/300 (63.00%), Query Frame = 0 
Query:   94 ISSILDTLFNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKW---SVKPLSMDQLGLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIG-FGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFL 389
            ++ IL+ L   GYD+++RP +G +P  +  +M + S+GPV+     +++D +F Q W D RL++N+T ++ L +N   + KIW PDTFF N K++  H +T PNR +RI  DGR+ Y+ RLTI A CQ+ L  FP+D   CPLE  S+G+  +EI+Y+W   SV+        L Q++ +   + T      S +   + ++F   R+ G++ +Q YIP TLIV+ SWV+FW+ K A    +PARTSLG ++VL++ T+     KS P+V Y TA+D+F+ +CF+ VF+ALVE+  L++ 
Sbjct:   66 VTVILNNLLE-GYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFGQTWYDRRLKFNST-IKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVSDTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDA----VPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYF 359
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BLAST of gaba-gated ion partial vs. SwissProt
Match: gi|120788|sp|P18508.1|GBRG2_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit gamma-2; AltName: Full=GABA(A) receptor subunit gamma-2; Flags: Precursor)

HSP 1 Score: 238.81 bits (608), Expect = 9.039e-72
Identity = 120/300 (40.00%), Postives = 189/300 (63.00%), Query Frame = 0 
Query:   94 ISSILDTLFNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKW---SVKPLSMDQLGLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIG-FGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFL 389
            ++ IL+ L   GYD+++RP +G +P  +  +M + S+GPV+     +++D +F Q W D RL++N+T ++ L +N   + KIW PDTFF N K++  H +T PNR +RI  DGR+ Y+ RLTI A CQ+ L  FP+D   CPLE  S+G+  +EI+Y+W   SV+        L Q++ +   + T      S +   + ++F   R+ G++ +Q YIP TLIV+ SWV+FW+ K A    +PARTSLG ++VL++ T+     KS P+V Y TA+D+F+ +CF+ VF+ALVE+  L++ 
Sbjct:   65 VTVILNNLLE-GYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNST-IKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVGDTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDA----VPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYF 358
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BLAST of gaba-gated ion partial vs. SwissProt
Match: gi|120785|sp|P21548.1|GBRG2_CHICK (RecName: Full=Gamma-aminobutyric acid receptor subunit gamma-2; AltName: Full=GABA(A) receptor subunit gamma-2; Flags: Precursor)

HSP 1 Score: 238.81 bits (608), Expect = 1.087e-71
Identity = 125/339 (36.87%), Postives = 199/339 (58.70%), Query Frame = 0 
Query:   62 WGLILSSLNRTKRTASSPSFQPFRNEREL-------SKQISSILDTLFNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKW---SVKPLSMDQLGLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIG-FGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFL 389
            W L+  SL +         ++ + + +            ++ IL+ L   GYD+++RP +G +P  +  +M + S+GPV+     +++D +F Q W D RL++N+T ++ L +N   + KIW PDTFF N K++  H +T PNR +RI  DGR+ Y+ RLTI A CQ+ L  FP+D   CPLE  S+G+  +EIIY+W   SV+        L Q++     + T      S +   + ++F   R+ G++ +Q YIP TLIV+ SWV+FW+ K A    +PARTSLG ++VL++ T+     KS P+V Y TA+D+F+ +CF+ VF+ALVE+  L++ 
Sbjct:   26 WALVFLSLIQCSTQKGDDDYEDYTSNKTWVLTPKVHESDVTLILNGLLE-GYDNKLRPDIGVKPTVIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNST-IKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDAHSCPLEFSSYGYPREEIIYQWKRSSVEVGDTRSWRLYQFSFTGLRNTTEVVKTTSGDYVVMSVYFNLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDA----VPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYF 358
[Close]
BLAST of gaba-gated ion partial vs. SwissProt
Match: gi|75061993|sp|Q5REA1.1|GBRG2_PONAB (RecName: Full=Gamma-aminobutyric acid receptor subunit gamma-2; AltName: Full=GABA(A) receptor subunit gamma-2; Flags: Precursor >gi|116242488|sp|P18507.2|GBRG2_HUMAN RecName: Full=Gamma-aminobutyric acid receptor subunit gamma-2; AltName: Full=GABA(A) receptor subunit gamma-2; Flags: Precursor)

HSP 1 Score: 238.424 bits (607), Expect = 1.196e-71
Identity = 120/300 (40.00%), Postives = 189/300 (63.00%), Query Frame = 0 
Query:   94 ISSILDTLFNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKW---SVKPLSMDQLGLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIG-FGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFL 389
            ++ IL+ L   GYD+++RP +G +P  +  +M + S+GPV+     +++D +F Q W D RL++N+T ++ L +N   + KIW PDTFF N K++  H +T PNR +RI  DGR+ Y+ RLTI A CQ+ L  FP+D   CPLE  S+G+  +EI+Y+W   SV+        L Q++ +   + T      S +   + ++F   R+ G++ +Q YIP TLIV+ SWV+FW+ K A    +PARTSLG ++VL++ T+     KS P+V Y TA+D+F+ +CF+ VF+ALVE+  L++ 
Sbjct:   66 VTVILNNLLE-GYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNST-IKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVGDTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDA----VPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYF 359
[Close]
BLAST of gaba-gated ion partial vs. SwissProt
Match: gi|20141351|sp|P22723.3|GBRG2_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit gamma-2; AltName: Full=GABA(A) receptor subunit gamma-2; Flags: Precursor)

HSP 1 Score: 238.81 bits (608), Expect = 1.273e-71
Identity = 120/300 (40.00%), Postives = 189/300 (63.00%), Query Frame = 0 
Query:   94 ISSILDTLFNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKW---SVKPLSMDQLGLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIG-FGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFL 389
            ++ IL+ L   GYD+++RP +G +P  +  +M + S+GPV+     +++D +F Q W D RL++N+T ++ L +N   + KIW PDTFF N K++  H +T PNR +RI  DGR+ Y+ RLTI A CQ+ L  FP+D   CPLE  S+G+  +EI+Y+W   SV+        L Q++ +   + T      S +   + ++F   R+ G++ +Q YIP TLIV+ SWV+FW+ K A    +PARTSLG ++VL++ T+     KS P+V Y TA+D+F+ +CF+ VF+ALVE+  L++ 
Sbjct:   65 VTVILNNLLE-GYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNST-IKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVGDTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDA----VPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYF 358
[Close]
BLAST of gaba-gated ion partial vs. SwissProt
Match: gi|232127|sp|P30191.1|GBRA6_RAT (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor)

HSP 1 Score: 237.654 bits (605), Expect = 1.744e-71
Identity = 122/308 (39.61%), Postives = 184/308 (59.74%), Query Frame = 0 
Query:   91 SKQISSILDTLFNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKPLSMDQL-----GLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGK-SKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTL 392
            S+ +S ILD L   GYD+++RP  G    EV+ ++ + S GPV + +  ++MD +FRQ WTD RL++       L +N   ++KIW PDTFF NGK+S  H MT PN+  R+  +G I Y+ RLTI A C M L  FP+D   CPL+ GS+ +   EIIY W   PL   ++      L QY+LI  T  +     ++     + ++F  +R+ G++++QIY P  + V+ S V+FW+ K +    +PART  G ++VL++ T+    + S P+V YATA+D FI +CF  VF+AL+EFA +N+   L
Sbjct:   29 SENVSRILDNLLE-GYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFKGPA-EILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMHNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKES----VPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNL 330
[Close]
BLAST of gaba-gated ion partial vs. SwissProt
Match: gi|3023835|sp|Q90845.1|GBRA6_CHICK (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor)

HSP 1 Score: 238.039 bits (606), Expect = 2.053e-71
Identity = 123/308 (39.94%), Postives = 185/308 (60.06%), Query Frame = 0 
Query:   91 SKQISSILDTLFNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKPLSMDQL-----GLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGK-SKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTL 392
            S+ I+ ILD L + GYD+++RP  G    EV+ ++ + S GPV + +  ++MD +FRQ WTD RL++       L +N   ++KIW PDTFF NGK+S  H MT PN+  RI  +G I Y+ RLTI A C M L  FP+D   CPL+ GS+ +   EIIY W   PL   ++      L QY+LI  T  +     ++     + ++F  +R+ G++++QIY P  + V+ S V+FW+ K +    +PART  G ++VL++ T+    + S P+V YATA+D FI +CF  VF+AL+EFA +N+   L
Sbjct:   29 SENITRILDKLLD-GYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFGGPT-EILRLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGPLHSVEVPQESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKES----VPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNL 330
[Close]
BLAST of gaba-gated ion partial vs. SwissProt
Match: gi|341941084|sp|P16305.3|GBRA6_MOUSE (RecName: Full=Gamma-aminobutyric acid receptor subunit alpha-6; AltName: Full=GABA(A) receptor subunit alpha-6; Flags: Precursor)

HSP 1 Score: 237.269 bits (604), Expect = 2.868e-71
Identity = 122/308 (39.61%), Postives = 184/308 (59.74%), Query Frame = 0 
Query:   91 SKQISSILDTLFNSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKPLSMDQL-----GLAQYNLINWTHGTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGK-SKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTL 392
            S+ +S ILD L   GYD+++RP  G    EV+ ++ + S GPV + +  ++MD +FRQ WTD RL++       L +N   ++KIW PDTFF NGK+S  H MT PN+  R+  +G I Y+ RLTI A C M L  FP+D   CPL+ GS+ +   EIIY W   PL   ++      L QY+LI  T  +     ++     + ++F  +R+ G++++QIY P  + V+ S V+FW+ K +    +PART  G ++VL++ T+    + S P+V YATA+D FI +CF  VF+AL+EFA +N+   L
Sbjct:   29 SENVSRILDNLLE-GYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFKGPA-EILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKTEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKES----VPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNL 330
[Close]
BLAST of gaba-gated ion partial vs. nr
Match: gi|1325322975|ref|XP_023343317.1| (glycine receptor subunit alpha-2-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 417.542 bits (1072), Expect = 7.310e-137
Identity = 194/322 (60.25%), Postives = 253/322 (78.57%), Query Frame = 0 
Query:   84 FRNERELSKQISSILDTLFN-SGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKPLSMDQ-LGLAQYNLINWTHGT---YNGM---DDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVRRLK 397
            +++ + +  + S  LD L   SGY+ + RP  G QP+ V VN+AIRSMGPVDE K+IFS+DCYFRQ WTD RLRYN T L EL +NW FL KIW+PDTFF NGK+S+LHK+TVPNRF+RI+P G++SYSQRLTI A C M+LRKFPLD+Q C LEIGSFG+  ++++YKW  K LS+D  + LAQ++L +W +     Y+G+   +  RN S V + F FERQ+GF++LQIY PLTLIV CSWV+FWL KT KG E+PART+LGA++VLS+V +GFGGKSKP+VGY+TA+D++IILCF+ VFAALVEFA +NF+DT ++R +
Sbjct:   69 YKSGKSMGSETSRTLDYLLTESGYNKRFRPSFGGQPIPVFVNLAIRSMGPVDENKEIFSLDCYFRQTWTDERLRYNTTGLNELALNWAFLAKIWKPDTFFLNGKQSFLHKITVPNRFVRISPSGKVSYSQRLTIWAACPMNLRKFPLDSQICKLEIGSFGYTVEDVLYKWQKKALSIDDGVSLAQFHLADWNYQEKIGYSGLRTREGLRNDSTVQIDFFFERQTGFFLLQIYTPLTLIVFCSWVSFWLVKTEKGGEVPARTALGATTVLSIVNLGFGGKSKPKVGYSTAMDIYIILCFVAVFAALVEFASINFIDTFIKRFR 390
[Close]
BLAST of gaba-gated ion partial vs. nr
Match: gi|1325256141|ref|XP_023321281.1| (gamma-aminobutyric acid receptor subunit alpha-6-like isoform X3 [Eurytemora affinis])

HSP 1 Score: 390.578 bits (1002), Expect = 3.288e-126
Identity = 180/329 (54.71%), Postives = 248/329 (75.38%), Query Frame = 0 
Query:   84 FRNERELSKQISSILDTLFNSG-YDHQIRP---RVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKPLSMDQLGLAQYNLINWTHGTYNG------MDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVRRLKRKDKD 402
            +RN +E++ Q+S  LD L +   Y+ Q+RP    + + P++V++NMAIRSMGPVDE +++FS+DCYFRQ WTD RLR+N T + EL ++WQFL KIW+PDT F NG++ YLHK+TVPNRFIRI+P GR+SYSQRLT+ ++C M L KFP D+Q C LEIGS+G+ +D++ Y+W++KP+S+D LGLAQY++ +  +G              R  S   L F F+RQSGF++L IY PLTLIVMCSWV+FW+ KT    ++P+R SLG +S+LSV  +GFGGK+KPQ+GYATALDV+ I+CF   FAAL+EFA +NF+DT  +RLK+ ++D
Sbjct:   60 YRNGKEVAGQVSDTLDILLDKDRYNRQMRPPGENLDTSPVQVQINMAIRSMGPVDEVRELFSLDCYFRQSWTDTRLRFNTTGISELVLDWQFLTKIWKPDTTFLNGQKCYLHKITVPNRFIRISPSGRVSYSQRLTLWSKCPMYLGKFPFDSQSCSLEIGSYGYTSDDLTYEWALKPVSIDDLGLAQYHMTDLNYGVQTSPTKRKISSGFRTDSVAFLRFDFQRQSGFFLLGIYFPLTLIVMCSWVSFWIVKT----DVPSRVSLGVTSLLSVTKVGFGGKAKPQIGYATALDVYTIICFFFSFAALLEFALINFIDTYFKRLKQWEQD 384
[Close]
BLAST of gaba-gated ion partial vs. nr
Match: gi|1325256144|ref|XP_023321290.1| (gamma-aminobutyric acid receptor subunit alpha-6-like isoform X4 [Eurytemora affinis])

HSP 1 Score: 390.193 bits (1001), Expect = 4.058e-126
Identity = 180/329 (54.71%), Postives = 248/329 (75.38%), Query Frame = 0 
Query:   84 FRNERELSKQISSILDTLFNSG-YDHQIRP---RVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKPLSMDQLGLAQYNLINWTHGTYNG------MDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVRRLKRKDKD 402
            +RN +E++ Q+S  LD L +   Y+ Q+RP    + + P++V++NMAIRSMGPVDE +++FS+DCYFRQ WTD RLR+N T + EL ++WQFL KIW+PDT F NG++ YLHK+TVPNRFIRI+P GR+SYSQRLT+ ++C M L KFP D+Q C LEIGS+G+ +D++ Y+W++KP+S+D LGLAQY++ +  +G              R  S   L F F+RQSGF++L IY PLTLIVMCSWV+FW+ KT    ++P+R SLG +S+LSV  +GFGGK+KPQ+GYATALDV+ I+CF   FAAL+EFA +NF+DT  +RLK+ ++D
Sbjct:   58 YRNGKEVAGQVSDTLDILLDKDRYNRQMRPPGENLDTSPVQVQINMAIRSMGPVDEVRELFSLDCYFRQSWTDTRLRFNTTGISELVLDWQFLTKIWKPDTTFLNGQKCYLHKITVPNRFIRISPSGRVSYSQRLTLWSKCPMYLGKFPFDSQSCSLEIGSYGYTSDDLTYEWALKPVSIDDLGLAQYHMTDLNYGVQTSPTKRKISSGFRTDSVAFLRFDFQRQSGFFLLGIYFPLTLIVMCSWVSFWIVKT----DVPSRVSLGVTSLLSVTKVGFGGKAKPQIGYATALDVYTIICFFFSFAALLEFALINFIDTYFKRLKQWEQD 382
[Close]
BLAST of gaba-gated ion partial vs. nr
Match: gi|1325256137|ref|XP_023321274.1| (gamma-aminobutyric acid receptor subunit alpha-6-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 390.193 bits (1001), Expect = 4.435e-126
Identity = 180/329 (54.71%), Postives = 248/329 (75.38%), Query Frame = 0 
Query:   84 FRNERELSKQISSILDTLFNSG-YDHQIRP---RVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKPLSMDQLGLAQYNLINWTHGTYNG------MDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVRRLKRKDKD 402
            +RN +E++ Q+S  LD L +   Y+ Q+RP    + + P++V++NMAIRSMGPVDE +++FS+DCYFRQ WTD RLR+N T + EL ++WQFL KIW+PDT F NG++ YLHK+TVPNRFIRI+P GR+SYSQRLT+ ++C M L KFP D+Q C LEIGS+G+ +D++ Y+W++KP+S+D LGLAQY++ +  +G              R  S   L F F+RQSGF++L IY PLTLIVMCSWV+FW+ KT    ++P+R SLG +S+LSV  +GFGGK+KPQ+GYATALDV+ I+CF   FAAL+EFA +NF+DT  +RLK+ ++D
Sbjct:   61 YRNGKEVAGQVSDTLDILLDKDRYNRQMRPPGENLDTSPVQVQINMAIRSMGPVDEVRELFSLDCYFRQSWTDTRLRFNTTGISELVLDWQFLTKIWKPDTTFLNGQKCYLHKITVPNRFIRISPSGRVSYSQRLTLWSKCPMYLGKFPFDSQSCSLEIGSYGYTSDDLTYEWALKPVSIDDLGLAQYHMTDLNYGVQTSPTKRKISSGFRTDSVAFLRFDFQRQSGFFLLGIYFPLTLIVMCSWVSFWIVKT----DVPSRVSLGVTSLLSVTKVGFGGKAKPQIGYATALDVYTIICFFFSFAALLEFALINFIDTYFKRLKQWEQD 385
[Close]
BLAST of gaba-gated ion partial vs. nr
Match: gi|1325256122|ref|XP_023321250.1| (gamma-aminobutyric acid receptor subunit alpha-6-like isoform X1 [Eurytemora affinis] >gi|1325256126|ref|XP_023321258.1| gamma-aminobutyric acid receptor subunit alpha-6-like isoform X1 [Eurytemora affinis] >gi|1325256131|ref|XP_023321267.1| gamma-aminobutyric acid receptor subunit alpha-6-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 390.193 bits (1001), Expect = 4.755e-126
Identity = 180/329 (54.71%), Postives = 248/329 (75.38%), Query Frame = 0 
Query:   84 FRNERELSKQISSILDTLFNSG-YDHQIRP---RVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKPLSMDQLGLAQYNLINWTHGTYNG------MDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVRRLKRKDKD 402
            +RN +E++ Q+S  LD L +   Y+ Q+RP    + + P++V++NMAIRSMGPVDE +++FS+DCYFRQ WTD RLR+N T + EL ++WQFL KIW+PDT F NG++ YLHK+TVPNRFIRI+P GR+SYSQRLT+ ++C M L KFP D+Q C LEIGS+G+ +D++ Y+W++KP+S+D LGLAQY++ +  +G              R  S   L F F+RQSGF++L IY PLTLIVMCSWV+FW+ KT    ++P+R SLG +S+LSV  +GFGGK+KPQ+GYATALDV+ I+CF   FAAL+EFA +NF+DT  +RLK+ ++D
Sbjct:   63 YRNGKEVAGQVSDTLDILLDKDRYNRQMRPPGENLDTSPVQVQINMAIRSMGPVDEVRELFSLDCYFRQSWTDTRLRFNTTGISELVLDWQFLTKIWKPDTTFLNGQKCYLHKITVPNRFIRISPSGRVSYSQRLTLWSKCPMYLGKFPFDSQSCSLEIGSYGYTSDDLTYEWALKPVSIDDLGLAQYHMTDLNYGVQTSPTKRKISSGFRTDSVAFLRFDFQRQSGFFLLGIYFPLTLIVMCSWVSFWIVKT----DVPSRVSLGVTSLLSVTKVGFGGKAKPQIGYATALDVYTIICFFFSFAALLEFALINFIDTYFKRLKQWEQD 387
[Close]
BLAST of gaba-gated ion partial vs. nr
Match: gi|1325322977|ref|XP_023343318.1| (gamma-aminobutyric acid receptor alpha-like isoform X2 [Eurytemora affinis] >gi|1325322979|ref|XP_023343320.1| gamma-aminobutyric acid receptor alpha-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 380.178 bits (975), Expect = 7.927e-124
Identity = 175/275 (63.64%), Postives = 224/275 (81.45%), Query Frame = 0 
Query:  130 MGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWSVKPLSMDQ-LGLAQYNLINWTHGT---YNGM---DDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGKSKPQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVRRLK 397
            MGPVDE K+IFS+DCYFRQ WTD RLRYN T L EL +NW FL KIW+PDTFF NGK+S+LHK+TVPNRF+RI+P G++SYSQRLTI A C M+LRKFPLD+Q C LEIGSFG+  ++++YKW  K LS+D  + LAQ++L +W +     Y+G+   +  RN S V + F FERQ+GF++LQIY PLTLIV CSWV+FWL KT KG E+PART+LGA++VLS+V +GFGGKSKP+VGY+TA+D++IILCF+ VFAALVEFA +NF+DT ++R +
Sbjct:    1 MGPVDENKEIFSLDCYFRQTWTDERLRYNTTGLNELALNWAFLAKIWKPDTFFLNGKQSFLHKITVPNRFVRISPSGKVSYSQRLTIWAACPMNLRKFPLDSQICKLEIGSFGYTVEDVLYKWQKKALSIDDGVSLAQFHLADWNYQEKIGYSGLRTREGLRNDSTVQIDFFFERQTGFFLLQIYTPLTLIVFCSWVSFWLVKTEKGGEVPARTALGATTVLSIVNLGFGGKSKPKVGYSTAMDIYIILCFVAVFAALVEFASINFIDTFIKRFR 275
[Close]
BLAST of gaba-gated ion partial vs. nr
Match: gi|1061470915|gb|ODM90107.1| (Gamma-aminobutyric acid receptor subunit alpha-6 [Orchesella cincta])

HSP 1 Score: 322.783 bits (826), Expect = 3.140e-102
Identity = 161/344 (46.80%), Postives = 226/344 (65.70%), Query Frame = 0 
Query:   87 ERELSKQISSILDTLFNSG-YDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNN--TRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGS----------------------FGHDADEIIYKW---SVKPLSMDQ-LGLAQYNLINWTHGTYNGMDDSR-NVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGKSK-PQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVRRLKRK 399
            E ELSK ++++LD L     YD +IRP  G  P+ +EVNM I+S+GPV E  +++SMDCYFRQ W D RL++N   T L E  MNW FL+K+W+PDT+F NGK+SYLH +TVPN+F+R+  DG ++YS RLTIKA C M LRKFPLD+Q CPLEIGS                      +G+  ++++Y W      P+  ++ + LAQY+L          +   R N S V +HF  +R +G+++LQ+Y+P TLIV CSWV+FW+   A    +PAR SLG ++VLS+ T+GFGG+S+ P+  YATALD F+I+CF  VFA++VE+A +NFLD + + +  K
Sbjct:   30 ELELSKHVTNLLDGLLKEDRYDKRIRPNFGGPPVTIEVNMYIKSLGPVSETDEVYSMDCYFRQMWVDNRLKFNASATGLSEFSMNWLFLDKVWKPDTYFVNGKKSYLHSITVPNKFLRLRQDGLLTYSMRLTIKASCPMHLRKFPLDSQSCPLEIGSCKRELADDDHDEKASLSKFHLFYGYSNNDVLYAWFKSGKDPVGREEGVNLAQYDLTEIKTKEEIRLSSRRDNFSVVAVHFHLKRHTGYFMLQVYVPCTLIVSCSWVSFWIDPQA----VPARVSLGVTTVLSMTTLGFGGRSQMPRTSYATALDWFVIICFSFVFASMVEYAAINFLDKMTKDVAAK 369
[Close]
BLAST of gaba-gated ion partial vs. nr
Match: gi|1339081312|ref|XP_023701656.1| (gamma-aminobutyric acid receptor subunit alpha-6-like isoform X1 [Cryptotermes secundus] >gi|1339081314|ref|XP_023701657.1| gamma-aminobutyric acid receptor subunit alpha-6-like isoform X1 [Cryptotermes secundus] >gi|1339081316|ref|XP_023701658.1| gamma-aminobutyric acid receptor subunit alpha-6-like isoform X1 [Cryptotermes secundus] >gi|1339081318|ref|XP_023701659.1| gamma-aminobutyric acid receptor subunit alpha-6-like isoform X1 [Cryptotermes secundus] >gi|1330926609|gb|PNF39642.1| Gamma-aminobutyric acid receptor subunit alpha-6 [Cryptotermes secundus])

HSP 1 Score: 322.783 bits (826), Expect = 5.325e-100
Identity = 161/327 (49.24%), Postives = 224/327 (68.50%), Query Frame = 0 
Query:   79 PSFQPFRNERELSKQISSILDTLFN-SGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTRLRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKW-SVKPLSM-DQLGLAQYNLINWTH---GTYNGMDDSRNVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGKSK-PQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVRRLKR 398
            PS    R+ R LSK I+S LD L N S YD  IRP  G  P+ + VNM I+SMG V E  Q + MDCYFRQ W D RL ++   L E  ++W FL+++W+PDTFF NGK+S+LH++TVPN+F+R+  DG ++YS RLTIKA C M LRKFPLD+Q CPL IGS+G+  ++++Y+W  V+P+ + D + L+QY L+N T    G +    D  +V K   H +  R  G++VLQ+Y+P  LIV CSWV+FW+   A    +PAR  LG ++VLS+ TIGFGG+++ P+V YATALD F+I+CF  VFA ++E+A +NF D +V  +K+
Sbjct:   21 PSGAVLRDYRFLSKNITSTLDQLLNKSRYDKGIRPDFGGSPVTIRVNMHIKSMGSVSETDQEYVMDCYFRQSWYDRRLGFSFPGLDEFSLSWLFLDRVWKPDTFFLNGKKSHLHRITVPNKFLRLRNDGFLTYSMRLTIKASCPMHLRKFPLDSQSCPLLIGSYGYRTNDLVYEWDKVRPVVVEDNVELSQYKLVNITTEHVGKFVRETDEYSVIKAEFHLR--RNIGYFVLQLYVPCGLIVSCSWVSFWIDPAA----VPARVQLGVTTVLSMTTIGFGGRAQMPRVSYATALDSFVIICFSFVFAVMIEYAAINFFDKIVGDMKK 341
[Close]
BLAST of gaba-gated ion partial vs. nr
Match: gi|1215266958|gb|OXA53272.1| (Gamma-aminobutyric acid receptor subunit alpha-4 [Folsomia candida])

HSP 1 Score: 315.849 bits (808), Expect = 1.099e-99
Identity = 158/336 (47.02%), Postives = 228/336 (67.86%), Query Frame = 0 
Query:   82 QPFRNERELSKQISSILDTLF-NSGYDHQIRPRVGSQPLEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTR--LRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWS---VKPLSMDQ-LGLAQYNLINWTHGTYNGMDDSR-NVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPAR--------------TSLGASSVLSVVTIGFGGKSK-PQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVR 394
            Q  R  + LSK ++++LD+L     YD + RP V     ++EVNM I+SMGPV E  + +SMDCYFRQ W D RL++N ++  L+E  MNW FL ++W+PDT+F NGKRSYLH +TVPN+F+R+  DG+++YS RLT+KA+C M LRKFPLD+Q CPLEIGS+G+   +++Y W+     P+  +  + LAQY+L++ T      M   R N S V +HF  +R +G+++LQ+Y+P TLIV CSWV+FW+   A    +PAR              T  G ++VLS+ T+GFGG+S+ P+  YATALD F+ILCF  VFA++VE+A +NF+D +++
Sbjct:   25 QQLRYNKGLSKDVTNLLDSLLREDKYDKRFRPAV-----KIEVNMYIKSMGPVSETDETYSMDCYFRQIWVDNRLKFNRSQGGLKEFSMNWLFLERVWKPDTYFVNGKRSYLHSITVPNKFLRLRDDGKLTYSMRLTVKAKCPMHLRKFPLDSQSCPLEIGSYGYGDLDVLYAWAPGKSPPVQTEAGVNLAQYDLVDITTKEEIRMSSRRDNFSVVTVHFNLKRHTGYFMLQVYVPCTLIVSCSWVSFWIDPQA----VPARSERNSCTSFIVNWVTFSGVTTVLSMTTLGFGGRSQMPRTSYATALDWFVILCFAFVFASMVEYAAINFMDKMMK 351
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BLAST of gaba-gated ion partial vs. nr
Match: gi|1228384940|ref|XP_021954080.1| (gamma-aminobutyric acid receptor alpha-like isoform X1 [Folsomia candida])

HSP 1 Score: 312.768 bits (800), Expect = 1.076e-98
Identity = 146/284 (51.41%), Postives = 210/284 (73.94%), Query Frame = 0 
Query:  119 LEVEVNMAIRSMGPVDEQKQIFSMDCYFRQYWTDFRLRYNNTR--LRELPMNWQFLNKIWRPDTFFFNGKRSYLHKMTVPNRFIRIAPDGRISYSQRLTIKARCQMDLRKFPLDTQDCPLEIGSFGHDADEIIYKWS---VKPLSMDQ-LGLAQYNLINWTHGTYNGMDDSR-NVSKVLLHFKFERQSGFYVLQIYIPLTLIVMCSWVTFWLRKTAKGSEIPARTSLGASSVLSVVTIGFGGKSK-PQVGYATALDVFIILCFLEVFAALVEFAFLNFLDTLVR 394
            +++EVNM I+SMGPV E  + +SMDCYFRQ W D RL++N ++  L+E  MNW FL ++W+PDT+F NGKRSYLH +TVPN+F+R+  DG+++YS RLT+KA+C M LRKFPLD+Q CPLEIGS+G+   +++Y W+     P+  +  + LAQY+L++ T      M   R N S V +HF  +R +G+++LQ+Y+P TLIV CSWV+FW+   A    +PAR SLG ++VLS+ T+GFGG+S+ P+  YATALD F+ILCF  VFA++VE+A +NF+D +++
Sbjct:   23 VKIEVNMYIKSMGPVSETDETYSMDCYFRQIWVDNRLKFNRSQGGLKEFSMNWLFLERVWKPDTYFVNGKRSYLHSITVPNKFLRLRDDGKLTYSMRLTVKAKCPMHLRKFPLDSQSCPLEIGSYGYGDLDVLYAWAPGKSPPVQTEAGVNLAQYDLVDITTKEEIRMSSRRDNFSVVTVHFNLKRHTGYFMLQVYVPCTLIVSCSWVSFWIDPQA----VPARVSLGVTTVLSMTTLGFGGRSQMPRTSYATALDWFVILCFAFVFASMVEYAAINFMDKMMK 302
The following BLAST results are available for this feature:
BLAST of gaba-gated ion partial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 25
Match NameE-valueIdentityDescription
EMLSAG000000091374.032e-1723.69supercontig:LSalAtl2s:LSalAtl2s575:53505:62115:1 g... [more]
EMLSAG000000098258.120e-1640.21supercontig:LSalAtl2s:LSalAtl2s639:669883:722715:1... [more]
EMLSAG000000011139.426e-1523.10supercontig:LSalAtl2s:LSalAtl2s1186:160345:169896:... [more]
EMLSAG000000072631.387e-1423.11supercontig:LSalAtl2s:LSalAtl2s408:502144:561240:1... [more]
EMLSAG000000033142.218e-1422.86supercontig:LSalAtl2s:LSalAtl2s181:427820:487404:-... [more]

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BLAST of gaba-gated ion partial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|126302548|sp|Q16445.2|GBRA6_HUMAN1.388e-7239.62RecName: Full=Gamma-aminobutyric acid receptor sub... [more]
gi|143811394|sp|P20237.2|GBRA4_BOVIN1.560e-7234.25RecName: Full=Gamma-aminobutyric acid receptor sub... [more]
gi|120784|sp|P22300.1|GBRG2_BOVIN6.365e-7240.00RecName: Full=Gamma-aminobutyric acid receptor sub... [more]
gi|120788|sp|P18508.1|GBRG2_RAT9.039e-7240.00RecName: Full=Gamma-aminobutyric acid receptor sub... [more]
gi|120785|sp|P21548.1|GBRG2_CHICK1.087e-7136.87RecName: Full=Gamma-aminobutyric acid receptor sub... [more]
gi|75061993|sp|Q5REA1.1|GBRG2_PONAB1.196e-7140.00RecName: Full=Gamma-aminobutyric acid receptor sub... [more]
gi|20141351|sp|P22723.3|GBRG2_MOUSE1.273e-7140.00RecName: Full=Gamma-aminobutyric acid receptor sub... [more]
gi|232127|sp|P30191.1|GBRA6_RAT1.744e-7139.61RecName: Full=Gamma-aminobutyric acid receptor sub... [more]
gi|3023835|sp|Q90845.1|GBRA6_CHICK2.053e-7139.94RecName: Full=Gamma-aminobutyric acid receptor sub... [more]
gi|341941084|sp|P16305.3|GBRA6_MOUSE2.868e-7139.61RecName: Full=Gamma-aminobutyric acid receptor sub... [more]

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BLAST of gaba-gated ion partial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325322975|ref|XP_023343317.1|7.310e-13760.25glycine receptor subunit alpha-2-like isoform X1 [... [more]
gi|1325256141|ref|XP_023321281.1|3.288e-12654.71gamma-aminobutyric acid receptor subunit alpha-6-l... [more]
gi|1325256144|ref|XP_023321290.1|4.058e-12654.71gamma-aminobutyric acid receptor subunit alpha-6-l... [more]
gi|1325256137|ref|XP_023321274.1|4.435e-12654.71gamma-aminobutyric acid receptor subunit alpha-6-l... [more]
gi|1325256122|ref|XP_023321250.1|4.755e-12654.71gamma-aminobutyric acid receptor subunit alpha-6-l... [more]
gi|1325322977|ref|XP_023343318.1|7.927e-12463.64gamma-aminobutyric acid receptor alpha-like isofor... [more]
gi|1061470915|gb|ODM90107.1|3.140e-10246.80Gamma-aminobutyric acid receptor subunit alpha-6 [... [more]
gi|1339081312|ref|XP_023701656.1|5.325e-10049.24gamma-aminobutyric acid receptor subunit alpha-6-l... [more]
gi|1215266958|gb|OXA53272.1|1.099e-9947.02Gamma-aminobutyric acid receptor subunit alpha-4 [... [more]
gi|1228384940|ref|XP_021954080.1|1.076e-9851.41gamma-aminobutyric acid receptor alpha-like isofor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold691_size110934supercontigscaffold691_size110934:39185..40964 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:single-organism transport
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold691_size110934-processed-gene-0.2-mRNA-1snap_masked-scaffold691_size110934-processed-gene-0.2-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold691_size110934:39185..40964+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold691_size110934-processed-gene-0.2 ID=snap_masked-scaffold691_size110934-processed-gene-0.2|Name=gaba-gated ion partial|organism=Tigriopus kingsejongensis|type=gene|length=1780bp|location=Sequence derived from alignment at scaffold691_size110934:39185..40964+ (Tigriopus kingsejongensis)
ATGGTTCTACTCTTTCAAGTCATGTTTGACGAGAGTTGGACCCAAATGGG
CGCCCTGGCCTGCAACGGGCGGTTCACGGATTTTTGCGATAATTTCGAGG
CCAACGACTCTGAGGAGGATGAGACGATCGCTAGCTCGGCCTTCTCCCCA
TCCCCAGCGACGAGTCGAAGGGATCACGAGCCCTGGGGGCTAATTCTGTC
TTCCCTTAATCGAACCAAACGAACTGCTAGTAGTCCATCGTTCCAGCCAT
TTCGAAACGAGAGAGAACTTTCAAAGCAAATATCCAGCATACTCGATACT
CTCTTCAATTCTGGTTACGACCATCAAATTCGACCTCGCGTAGGCTCGCA
ACCATTGGAGGTCGAGGTTAACATGGCCATACGAAGCATGGGACCAGTGG
ACGAGCAGAAACAGATCTTCTCCATGGATTGCTATTTCAGACAATATTGG
ACGGATTTCCGGCTCCGCTACAACAATACCCGCCTTCGAGAGCTGCCCAT
GAATTGGCAGTTTTTGAACAAGATCTGGAGGCCGGACACGTTCTTCTTCA
ATGGCAAGCGGTCTTACCTGCACAAGATGACTGTTCCCAATCGCTTCATA
CGGATTGCCCCTGACGGGCGCATTTCCTACTCTCAGCGGCTCACAATCAA
GGCCAGGTGTCAGATGGACTTGCGAAAATTCCCATTGGACACTCAGGACT
GTCCCCTCGAGATTGGGAGCTTTGGCCACGATGCCGATGAGATCATCTAC
AAATGGAGTGTCAAACCCTTGTCCATGGACCAGCTGGGTCTTGCTCAATA
CAACCTCATTAACTGGACGCATGGGACCTACAACGGTATGGACGACAGTC
GGAACGTGTCCAAAGTGCTGCTCCACTTCAAGTTCGAGCGCCAGTCAGGT
TTCTACGTCTTGCAGATTTACATTCCCCTGACCTTGATCGTGATGTGCTC
TTGGGTGACTTTTTGGCTCCGAAAGACCGCCAAAGGCAGTGAGATTCCCG
CTAGAACAAGCTTAGGTGCCTCCAGTGTGCTTTCAGTGGTAACCATTGGC
TTTGGGGGTAAGAGCAAGCCCCAAGTGGGCTACGCCACAGCCCTGGATGT
TTTTATCATCCTCTGCTTCCTGGAAGTGTTTGCAGCACTCGTGGAGTTTG
CCTTCTTGAACTTCCTCGACACCTTGGTGCGTCGCCTGAAGCGAAAAGAC
AAAGACTGCAAGTTGGTCATGTTAATGGCCCAACACGACGTCATGCACGG
ACGAATGCCCCAACTTCCGGAGCGACAGGAGAGCACGGTGATGGACACGG
ACGGAATTTGTACCGACGAGGACATTCTTACCCCTCCGGACTCGACAACT
CCCAGTCGTGATGACGTGTTTAATTTTAATGGGCGTCCCTGTGAGCTCAT
GAGGGCCTTGGAAGAGGACCGTGACTGTTGGACACGATTTGCGGATTTTA
TCATCGACTACCTTCAGTACTTCAATTGCTGTCGCTCCATACGGAAGACG
GAGATGTTCCAAAAGCCCCAAGTTGTGTTCAATCGGGTGGATATGTGCTC
ACGGAGATTGTTTCCGTTTACATTCATGTTACTTAATCTACTTTATTGGT
ATGGCTACATGTATTGGTTCTAAGATTAACACCACCCGCTTGCCGCTCTA
TCCCGCCAAATCCTCCCATAGCTCTGCAATGACACCGTATAATCCCTCCT
TTGTATGGAAACCTCTTTTATTGTTCACCTTTGCATGGCACACGAGCCAA
ACGATTCTTCTCTTCTAGATAATTGGGTAA
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Synonyms
The feature 'gaba-gated ion partial' has the following synonyms
Synonym
Tk06096
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