histone h2a-like, snap_masked-scaffold791_size96783-processed-gene-0.4 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of histone h2a-like vs. L. salmonis genes
Match: EMLSAG00000011020 (supercontig:LSalAtl2s:LSalAtl2s741:230720:233818:-1 gene:EMLSAG00000011020 transcript:EMLSAT00000011020 description:"snap_masked-LSalAtl2s741-processed-gene-2.19") HSP 1 Score: 75.0998 bits (183), Expect = 2.827e-17 Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 0 Query: 54 VMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKK 119 + YL EVLEL GN KK I+ HLQLAIR D+EL KLL GVTIA G+L NIQAVLLPKK Sbjct: 16 IQTYLTHEVLELPGNY----KKTHIIHCHLQLAIRRDKELKKLLAGVTIAHCGILHNIQAVLLPKK 77
BLAST of histone h2a-like vs. L. salmonis genes
Match: EMLSAG00000003961 (supercontig:LSalAtl2s:LSalAtl2s2120:1961:2668:-1 gene:EMLSAG00000003961 transcript:EMLSAT00000003961 description:"snap-LSalAtl2s2120-processed-gene-0.8") HSP 1 Score: 61.2326 bits (147), Expect = 2.725e-12 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0 Query: 18 SSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLE 64 SSR LQF IHRL+RK +Y ER+G+GAPVY+ A++EY+ AE+L+ Sbjct: 46 SSRTALQFLAVYIHRLVRKDNYIERLGSGAPVYIEALLEYIGAEILQ 92
BLAST of histone h2a-like vs. L. salmonis genes
Match: EMLSAG00000012218 (supercontig:LSalAtl2s:LSalAtl2s887:424407:426072:-1 gene:EMLSAG00000012218 transcript:EMLSAT00000012218 description:"snap-LSalAtl2s887-processed-gene-4.11") HSP 1 Score: 59.6918 bits (143), Expect = 5.120e-12 Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0 Query: 35 RKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKK 75 RKG+YAERVG+ A VYL AVME +A E+LEL NAA DNKK Sbjct: 16 RKGNYAERVGSDALVYLVAVMECIAPELLELTSNAARDNKK 56
BLAST of histone h2a-like vs. L. salmonis genes
Match: EMLSAG00000000432 (supercontig:LSalAtl2s:LSalAtl2s1068:354081:357686:1 gene:EMLSAG00000000432 transcript:EMLSAT00000000432 description:"snap_masked-LSalAtl2s1068-processed-gene-3.12") HSP 1 Score: 47.7506 bits (112), Expect = 1.124e-7 Identity = 29/61 (47.54%), Postives = 34/61 (55.74%), Query Frame = 0 Query: 20 RAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVP 80 RAGLQFPV RIHRLLRKG+Y +A M+YL A+V+ N NKK P Sbjct: 24 RAGLQFPVRRIHRLLRKGNY------------SATMKYLTAQVMYCCRN----NKKTPSSP 68
BLAST of histone h2a-like vs. SwissProt
Match: gi|122044770|sp|P02269.2|H2A_ASTRU (RecName: Full=Histone H2A) HSP 1 Score: 219.164 bits (557), Expect = 4.703e-70 Identity = 106/120 (88.33%), Postives = 111/120 (92.50%), Query Frame = 0 Query: 1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKT 120 MS RGKGGKA+ +KSRSSRAGLQFPVGR+HR LRKG+YAERVGAGAPVYLAAVMEYLAAE+LELAGNAA DNKK RI PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKKT Sbjct: 1 MSGRGKGGKARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of histone h2a-like vs. SwissProt
Match: gi|74752099|sp|Q96QV6.3|H2A1A_HUMAN (RecName: Full=Histone H2A type 1-A; AltName: Full=Histone H2A/r) HSP 1 Score: 217.238 bits (552), Expect = 3.134e-69 Identity = 107/123 (86.99%), Postives = 114/123 (92.68%), Query Frame = 0 Query: 1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTES 122 MS RGK GGKA+ SKSRSSRAGLQFPVGRIHRLLRKG+YAER+GAGAPVYLAAV+EYL AE+LELAGNA+ DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKKTES Sbjct: 1 MSGRGKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123
BLAST of histone h2a-like vs. SwissProt
Match: gi|74750623|sp|Q8IUE6.3|H2A2B_HUMAN (RecName: Full=Histone H2A type 2-B) HSP 1 Score: 216.853 bits (551), Expect = 3.848e-69 Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 0 Query: 1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTESDR 124 MS RGK GGKA+ +KSRSSRAGLQFPVGR+HRLLRKG+YAERVGAGAPVYLAAV+EYL AE+LELAGNAA DNKK RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKKTES + Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTESHK 125
BLAST of histone h2a-like vs. SwissProt
Match: gi|81872175|sp|Q64522.3|H2A2B_MOUSE (RecName: Full=Histone H2A type 2-B; AltName: Full=H2a-613A) HSP 1 Score: 216.083 bits (549), Expect = 7.693e-69 Identity = 105/125 (84.00%), Postives = 115/125 (92.00%), Query Frame = 0 Query: 1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTESDR 124 MS RGK GGKA+ +KSRSSRAGLQFPVGR+HRLLRKG+YAERVGAGAPVY+AAV+EYL AE+LELAGNAA DNKK RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKKTES + Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTESHK 125
BLAST of histone h2a-like vs. SwissProt
Match: gi|122004|sp|P02264.2|H2A_ONCMY (RecName: Full=Histone H2A) HSP 1 Score: 214.927 bits (546), Expect = 2.173e-68 Identity = 104/122 (85.25%), Postives = 113/122 (92.62%), Query Frame = 0 Query: 1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTE 121 MS RGK GGKA+ +K+RSSRAGLQFPVGR+HRLLRKG+YAERVGAGAPVYLAAV+EYL AE+LELAGNAA DNKK RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKKTE Sbjct: 1 MSGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of histone h2a-like vs. SwissProt
Match: gi|90101451|sp|P02262.2|H2A1_RAT (RecName: Full=Histone H2A type 1) HSP 1 Score: 214.542 bits (545), Expect = 3.816e-68 Identity = 106/123 (86.18%), Postives = 113/123 (91.87%), Query Frame = 0 Query: 1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTES 122 MS RGK GGKA+ +KSRSSRAGLQFPVGR+HRLLRKG+YAERVGAGAPVYLAAV+EYL AE+LELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL VTIA GGVLPNIQAVLLPKKTES Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTES 123
BLAST of histone h2a-like vs. SwissProt
Match: gi|81878911|sp|Q8R1M2.1|H2AJ_MOUSE (RecName: Full=Histone H2A.J; Short=H2a/j >gi|205831582|sp|A9UMV8.1|H2AJ_RAT RecName: Full=Histone H2A.J; Short=H2a/j) HSP 1 Score: 214.157 bits (544), Expect = 4.686e-68 Identity = 106/129 (82.17%), Postives = 115/129 (89.15%), Query Frame = 0 Query: 1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTESDRILKK 128 MS RGK GGK + +KSRSSRAGLQFPVGR+HRLLRKG+YAERVGAGAPVYLAAV+EYL AE+LELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL VTIA GGVLPNIQAVLLPKKTES ++ K Sbjct: 1 MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESQKVKSK 129
BLAST of histone h2a-like vs. SwissProt
Match: gi|12643341|sp|Q93077.3|H2A1C_HUMAN (RecName: Full=Histone H2A type 1-C; AltName: Full=Histone H2A/l >gi|90101449|sp|P0C169.2|H2A1C_RAT RecName: Full=Histone H2A type 1-C) HSP 1 Score: 214.157 bits (544), Expect = 5.454e-68 Identity = 106/123 (86.18%), Postives = 113/123 (91.87%), Query Frame = 0 Query: 1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTES 122 MS RGK GGKA+ +KSRSSRAGLQFPVGR+HRLLRKG+YAERVGAGAPVYLAAV+EYL AE+LELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL VTIA GGVLPNIQAVLLPKKTES Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTES 123
BLAST of histone h2a-like vs. SwissProt
Match: gi|121999|sp|P13912.2|H2A_CAIMO (RecName: Full=Histone H2A) HSP 1 Score: 213.772 bits (543), Expect = 5.881e-68 Identity = 106/129 (82.17%), Postives = 115/129 (89.15%), Query Frame = 0 Query: 1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTESDRILKK 128 MS RGK GGKA+ +KSRSSRAGLQFPVGR+HRLLRKG+YAERVGAGAPVYLAAV+EYL AE+LELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL VTIA GGVLPNIQAVLLPKKT+S + K Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAKSK 129
BLAST of histone h2a-like vs. SwissProt
Match: gi|47117890|sp|Q16777.4|H2A2C_HUMAN (RecName: Full=Histone H2A type 2-C; AltName: Full=Histone H2A-GL101; AltName: Full=Histone H2A/q >gi|81890464|sp|Q64523.3|H2A2C_MOUSE RecName: Full=Histone H2A type 2-C; AltName: Full=H2a-613B >gi|143019596|sp|A1A4R1.1|H2A2C_BOVIN RecName: Full=Histone H2A type 2-C) HSP 1 Score: 213.772 bits (543), Expect = 5.881e-68 Identity = 106/129 (82.17%), Postives = 115/129 (89.15%), Query Frame = 0 Query: 1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTESDRILKK 128 MS RGK GGKA+ +KSRSSRAGLQFPVGR+HRLLRKG+YAERVGAGAPVY+AAV+EYL AE+LELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL VTIA GGVLPNIQAVLLPKKTES + K Sbjct: 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK 129
BLAST of histone h2a-like vs. nr
Match: gi|1242773530|ref|XP_022326311.1| (histone H2A-like [Crassostrea virginica]) HSP 1 Score: 221.09 bits (562), Expect = 2.820e-68 Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0 Query: 1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTES 122 MS RGKGGK K +KSRSSRAGLQFPVGRIHRLLRKG+YAERVGAGAPVYLAAV+EYLAAEVLELAGNAA DNKK+RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKKT S Sbjct: 1 MSGRGKGGKTKSKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTGS 122
BLAST of histone h2a-like vs. nr
Match: gi|1036069662|ref|XP_016938452.1| (PREDICTED: histone H2A-like [Drosophila suzukii]) HSP 1 Score: 220.705 bits (561), Expect = 2.966e-68 Identity = 108/121 (89.26%), Postives = 112/121 (92.56%), Query Frame = 0 Query: 1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTE 121 MS RGKGGK +KSRS+RAGLQFPVGRIHRLLRKG+YAERVGAGAPVYLAAVMEYLAAEVLELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKKTE Sbjct: 1 MSGRGKGGKVNGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
BLAST of histone h2a-like vs. nr
Match: gi|919069133|ref|XP_013416043.1| (histone H2A [Lingula anatina] >gi|919069135|ref|XP_013416044.1| histone H2A [Lingula anatina] >gi|919069158|ref|XP_013416056.1| histone H2A [Lingula anatina] >gi|919069160|ref|XP_013416058.1| histone H2A [Lingula anatina]) HSP 1 Score: 220.32 bits (560), Expect = 4.151e-68 Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 0 Query: 1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTES 122 MS RGKGGKA+ KSRSSRAGLQFPVGRIHRLLRKG+YA+RVGAGAPVYLAAV+EYLAAEVLELAGNAA DNKK+RIVPRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKK+++ Sbjct: 1 MSGRGKGGKARAKGKSRSSRAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSKA 122
BLAST of histone h2a-like vs. nr
Match: gi|762134385|ref|XP_011450417.1| (PREDICTED: histone H2A [Crassostrea gigas] >gi|405975240|gb|EKC39821.1| Histone H2A [Crassostrea gigas]) HSP 1 Score: 220.705 bits (561), Expect = 4.349e-68 Identity = 109/122 (89.34%), Postives = 113/122 (92.62%), Query Frame = 0 Query: 1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTES 122 MS RGKGGK K +KSRSSRAGLQFPVGRIHRLLRKG+YAERVGAGAPVYLAAV+EYLAAEVLELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKKT S Sbjct: 1 MSGRGKGGKTKSKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTGS 122
BLAST of histone h2a-like vs. nr
Match: gi|157137737|ref|XP_001657157.1| (histone H2A [Aedes aegypti] >gi|108880814|gb|EAT45039.1| AAEL003669-PA [Aedes aegypti]) HSP 1 Score: 220.32 bits (560), Expect = 4.525e-68 Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = 0 Query: 1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVYLAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKTE 121 MS RGKGGK + +K+RSSRAGLQFPVGR HRLLRKG+YAERVGAGAPVYLAAVMEYLAAEVLELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKKTE Sbjct: 1 MSGRGKGGKVRAKAKTRSSRAGLQFPVGRTHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121 The following BLAST results are available for this feature:
BLAST of histone h2a-like vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 14
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BLAST of histone h2a-like vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of histone h2a-like vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold791_size96783:27129..34022+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold791_size96783-processed-gene-0.4 ID=snap_masked-scaffold791_size96783-processed-gene-0.4|Name=histone h2a-like|organism=Tigriopus kingsejongensis|type=gene|length=6894bp|location=Sequence derived from alignment at scaffold791_size96783:27129..34022+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'histone h2a-like' has the following synonyms
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