h2a_astru ame: full, snap_masked-scaffold791_size96783-processed-gene-0.7 (gene) Tigriopus kingsejongensis

Overview
Nameh2a_astru ame: full
Unique Namesnap_masked-scaffold791_size96783-processed-gene-0.7
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of h2a_astru ame: full vs. L. salmonis genes
Match: EMLSAG00000011020 (supercontig:LSalAtl2s:LSalAtl2s741:230720:233818:-1 gene:EMLSAG00000011020 transcript:EMLSAT00000011020 description:"snap_masked-LSalAtl2s741-processed-gene-2.19")

HSP 1 Score: 79.7221 bits (195), Expect = 3.223e-21
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 0
Query:   57 YLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAKK 123
            YL  EVLEL GN     KK  I+  HLQLAIR D+EL KLL GVTIA  G+L NIQAVLLPKK  +K
Sbjct:   19 YLTHEVLELPGNY----KKTHIIHCHLQLAIRRDKELKKLLAGVTIAHCGILHNIQAVLLPKKKTEK 81          
BLAST of h2a_astru ame: full vs. L. salmonis genes
Match: EMLSAG00000003961 (supercontig:LSalAtl2s:LSalAtl2s2120:1961:2668:-1 gene:EMLSAG00000003961 transcript:EMLSAT00000003961 description:"snap-LSalAtl2s2120-processed-gene-0.8")

HSP 1 Score: 63.929 bits (154), Expect = 8.240e-15
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   16 SRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLE 64
            S SSR  LQF    IHRL+RK NY +R+G+GAPVY+ +L+EY+ AE+L+
Sbjct:   44 SCSSRTALQFLAVYIHRLVRKDNYIERLGSGAPVYIEALLEYIGAEILQ 92          
BLAST of h2a_astru ame: full vs. L. salmonis genes
Match: EMLSAG00000012218 (supercontig:LSalAtl2s:LSalAtl2s887:424407:426072:-1 gene:EMLSAG00000012218 transcript:EMLSAT00000012218 description:"snap-LSalAtl2s887-processed-gene-4.11")

HSP 1 Score: 57.7658 bits (138), Expect = 1.000e-12
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 0
Query:   35 RKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARI 78
            RKGNYA+RVG+ A VYL ++ME +A E+LEL  NAA DNKK  I
Sbjct:   16 RKGNYAERVGSDALVYLVAVMECIAPELLELTSNAARDNKKICI 59          
BLAST of h2a_astru ame: full vs. L. salmonis genes
Match: EMLSAG00000000432 (supercontig:LSalAtl2s:LSalAtl2s1068:354081:357686:1 gene:EMLSAG00000000432 transcript:EMLSAT00000000432 description:"snap_masked-LSalAtl2s1068-processed-gene-3.12")

HSP 1 Score: 49.6766 bits (117), Expect = 1.436e-9
Identity = 28/57 (49.12%), Postives = 33/57 (57.89%), Query Frame = 0
Query:   20 RAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKA 76
            RAGLQFPV RIHRLLRKGNY            ++ M+YL A+V+    N    NKK 
Sbjct:   24 RAGLQFPVRRIHRLLRKGNY------------SATMKYLTAQVMYCCRN----NKKT 64          
BLAST of h2a_astru ame: full vs. SwissProt
Match: gi|122044770|sp|P02269.2|H2A_ASTRU (RecName: Full=Histone H2A)

HSP 1 Score: 212.231 bits (539), Expect = 1.661e-71
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAK 122
            MS RGKGGKA+  +KSRSSRAGLQFPVGR+HR LRKGNYA+RVGAGAPVYLA++MEYLAAE+LELAGNAA DNKK RI PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKK+AK
Sbjct:    1 MSGRGKGGKARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of h2a_astru ame: full vs. SwissProt
Match: gi|59799575|sp|P69141.2|H2A_STRPU (RecName: Full=Histone H2A, embryonic >gi|59799589|sp|P69142.2|H2AE_PSAMI RecName: Full=Histone H2A, embryonic)

HSP 1 Score: 207.223 bits (526), Expect = 2.030e-69
Identity = 99/122 (81.15%), Postives = 112/122 (91.80%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAK 122
            MS RGK GKA+  +K+RSSRAGLQFPVGR+HR LRKGNYAKRVG GAPVY+A+++EYL AE+LELAGNAA DNKK+RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKK+AK
Sbjct:    1 MSGRGKSGKARTKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of h2a_astru ame: full vs. SwissProt
Match: gi|122005|sp|P13630.2|H2A_PARLI (RecName: Full=Histone H2A)

HSP 1 Score: 206.068 bits (523), Expect = 4.188e-69
Identity = 99/122 (81.15%), Postives = 111/122 (90.98%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAK 122
            MS RGK GKA+  +KSRSSRAGLQFPVGR+HR LRKGNYAKRVG GAPVY+A+++EYL AE+LELAGNAA DNKK+RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKK+ K
Sbjct:    1 MSGRGKSGKARTKAKSRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGK 122          
BLAST of h2a_astru ame: full vs. SwissProt
Match: gi|462233|sp|P35061.2|H2A_ACRFO (RecName: Full=Histone H2A)

HSP 1 Score: 206.068 bits (523), Expect = 5.817e-69
Identity = 101/124 (81.45%), Postives = 113/124 (91.13%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAKKE 124
            MS RGKG      SKSRSSRAGLQFPVGRIHRLLRKGNYA+RVGAGAPVY+A+++EYL+AE+LELAGNAA DNKK+RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKK+ KK+
Sbjct:    1 MSGRGKGKAQGTKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKKQ 124          
BLAST of h2a_astru ame: full vs. SwissProt
Match: gi|121987|sp|P16886.2|H2AL_STRPU (RecName: Full=Late histone H2A.L3)

HSP 1 Score: 206.068 bits (523), Expect = 5.879e-69
Identity = 101/123 (82.11%), Postives = 114/123 (92.68%), Query Frame = 0
Query:    1 MSARGKG-GKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAK 122
            MS RGKG GKA+  +KSRS+RAGLQFPVGR+HR LRKGNYA+RVGAGAPVYLA+++EYLAAE+LELAGNAA DNKK RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKK++K
Sbjct:    1 MSGRGKGAGKARAKAKSRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTSK 123          
BLAST of h2a_astru ame: full vs. SwissProt
Match: gi|74752099|sp|Q96QV6.3|H2A1A_HUMAN (RecName: Full=Histone H2A type 1-A; AltName: Full=Histone H2A/r)

HSP 1 Score: 204.912 bits (520), Expect = 1.720e-68
Identity = 102/121 (84.30%), Postives = 112/121 (92.56%), Query Frame = 0
Query:    1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKS 120
            MS RGK GGKA+  SKSRSSRAGLQFPVGRIHRLLRKGNYA+R+GAGAPVYLA+++EYL AE+LELAGNA+ DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKK+
Sbjct:    1 MSGRGKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of h2a_astru ame: full vs. SwissProt
Match: gi|122004|sp|P02264.2|H2A_ONCMY (RecName: Full=Histone H2A)

HSP 1 Score: 204.142 bits (518), Expect = 3.834e-68
Identity = 101/123 (82.11%), Postives = 113/123 (91.87%), Query Frame = 0
Query:    1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAK 122
            MS RGK GGKA+  +K+RSSRAGLQFPVGR+HRLLRKGNYA+RVGAGAPVYLA+++EYL AE+LELAGNAA DNKK RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKK+ K
Sbjct:    1 MSGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 123          
BLAST of h2a_astru ame: full vs. SwissProt
Match: gi|121993|sp|P27661.2|H2AX_MOUSE (RecName: Full=Histone H2AX; Short=H2a/x; AltName: Full=Histone H2A.X)

HSP 1 Score: 203.756 bits (517), Expect = 8.503e-68
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 0
Query:    1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSA 121
            MS RGK GGKA+  +KSRSSRAGLQFPVGR+HRLLRKG+YA+RVGAGAPVYLA+++EYL AE+LELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKKS+
Sbjct:    1 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSS 122          
BLAST of h2a_astru ame: full vs. SwissProt
Match: gi|74750623|sp|Q8IUE6.3|H2A2B_HUMAN (RecName: Full=Histone H2A type 2-B)

HSP 1 Score: 202.986 bits (515), Expect = 1.028e-67
Identity = 101/121 (83.47%), Postives = 112/121 (92.56%), Query Frame = 0
Query:    1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKS 120
            MS RGK GGKA+  +KSRSSRAGLQFPVGR+HRLLRKGNYA+RVGAGAPVYLA+++EYL AE+LELAGNAA DNKK RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKK+
Sbjct:    1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of h2a_astru ame: full vs. SwissProt
Match: gi|81872175|sp|Q64522.3|H2A2B_MOUSE (RecName: Full=Histone H2A type 2-B; AltName: Full=H2a-613A)

HSP 1 Score: 202.216 bits (513), Expect = 1.859e-67
Identity = 100/121 (82.64%), Postives = 112/121 (92.56%), Query Frame = 0
Query:    1 MSARGK-GGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKS 120
            MS RGK GGKA+  +KSRSSRAGLQFPVGR+HRLLRKGNYA+RVGAGAPVY+A+++EYL AE+LELAGNAA DNKK RI+PRHLQLA+RNDEELNKLL GVTIA GGVLPNIQAVLLPKK+
Sbjct:    1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of h2a_astru ame: full vs. nr
Match: gi|662208256|ref|XP_008477669.1| (PREDICTED: histone H2A-like [Diaphorina citri] >gi|662217518|ref|XP_008482742.1| PREDICTED: histone H2A-like [Diaphorina citri])

HSP 1 Score: 218.394 bits (555), Expect = 1.772e-71
Identity = 109/123 (88.62%), Postives = 115/123 (93.50%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAKK 123
            MS RGKGGKAK  SK+RSSRAGLQFPVGRIHRLLRKGNYA+RVGAGAPVYLA++MEYLAAEVLELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKK+ KK
Sbjct:    1 MSGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123          
BLAST of h2a_astru ame: full vs. nr
Match: gi|1121115134|ref|XP_019547106.1| (PREDICTED: histone H2A-like [Aedes albopictus] >gi|1121115142|ref|XP_019547109.1| PREDICTED: histone H2A-like [Aedes albopictus] >gi|1121115145|ref|XP_019547110.1| PREDICTED: histone H2A-like [Aedes albopictus] >gi|1000212002|gb|KXJ81677.1| hypothetical protein RP20_CCG018287 [Aedes albopictus])

HSP 1 Score: 216.468 bits (550), Expect = 1.071e-70
Identity = 108/123 (87.80%), Postives = 115/123 (93.50%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAKK 123
            MS RGKGGKA+  +KSRSSRAGLQFPVGRIHRLLRKGNYA+RVGAGAPVYLA++MEYLAAEVLELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKK+ KK
Sbjct:    1 MSGRGKGGKARVKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123          
BLAST of h2a_astru ame: full vs. nr
Match: gi|1321329565|ref|XP_023307652.1| (histone H2A [Lucilia cuprina] >gi|1108464811|emb|CRL07048.1| CLUMA_CG019995, isoform A [Clunio marinus] >gi|1108464820|emb|CRL07057.1| CLUMA_CG019989, isoform A [Clunio marinus] >gi|1108464825|emb|CRL07062.1| CLUMA_CG019997, isoform A [Clunio marinus] >gi|1108464830|emb|CRL07067.1| CLUMA_CG019996, isoform A [Clunio marinus] >gi|1108464833|emb|CRL07070.1| CLUMA_CG019990, isoform A [Clunio marinus])

HSP 1 Score: 214.927 bits (546), Expect = 4.559e-70
Identity = 107/123 (86.99%), Postives = 114/123 (92.68%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAKK 123
            MS RGKGGK K  +KSRS+RAGLQFPVGRIHRLLRKGNYA+RVGAGAPVYLA++MEYLAAEVLELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKK+ KK
Sbjct:    1 MSGRGKGGKVKSKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123          
BLAST of h2a_astru ame: full vs. nr
Match: gi|1005948275|ref|XP_015782447.1| (PREDICTED: histone H2A [Tetranychus urticae] >gi|1005948277|ref|XP_015782448.1| PREDICTED: histone H2A [Tetranychus urticae] >gi|1005958727|ref|XP_015787747.1| PREDICTED: histone H2A [Tetranychus urticae])

HSP 1 Score: 214.927 bits (546), Expect = 4.609e-70
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAKK 123
            MS RGKGGK K  +KSRSSRAGLQFPVGRIHRLLRKGNYA+RVGAGAPVYLA+++EYLAAEVLELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKKS KK
Sbjct:    1 MSGRGKGGKVKSKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKSDKK 123          
BLAST of h2a_astru ame: full vs. nr
Match: gi|162319741|gb|ABX84387.1| (histone H2A, partial [Penaeus monodon])

HSP 1 Score: 214.542 bits (545), Expect = 5.679e-70
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAKK 123
            MS RG GGK K  SKSRSSRAGLQFPVGRIHRLLRKGNYA+RVGAGAPVYLA++MEYLAAEVLELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKK+ KK
Sbjct:    1 MSGRGNGGKVKGKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 123          
BLAST of h2a_astru ame: full vs. nr
Match: gi|755929542|ref|XP_011311067.1| (PREDICTED: histone H2A-like [Fopius arisanus] >gi|755930864|ref|XP_011313789.1| PREDICTED: histone H2A-like [Fopius arisanus])

HSP 1 Score: 214.542 bits (545), Expect = 6.766e-70
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAK 122
            MS RGKGGK K  +K+RSSRAGLQFPVGRIHRLLRKGNYA+RVGAGAPVYLA++MEYLAAEVLELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKK+ K
Sbjct:    1 MSGRGKGGKVKSKAKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of h2a_astru ame: full vs. nr
Match: gi|1121089775|ref|XP_019533532.1| (PREDICTED: histone H2A [Aedes albopictus] >gi|1121161941|ref|XP_019526538.1| PREDICTED: histone H2A [Aedes albopictus])

HSP 1 Score: 214.542 bits (545), Expect = 7.805e-70
Identity = 106/124 (85.48%), Postives = 115/124 (92.74%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAKKE 124
            MS+RGKGG AK   KSRSSRAGLQFPVGR HRLLRKGNYA+RVGAGAPVYLA++MEYL+AEVLELAGNAA DNKK+RI+PRHLQLAIRNDEELNKL+ GVTIA GGVLPNIQAVLLPKK+ KKE
Sbjct:    1 MSSRGKGGNAKAKPKSRSSRAGLQFPVGRTHRLLRKGNYAERVGAGAPVYLAAVMEYLSAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLMSGVTIAQGGVLPNIQAVLLPKKTEKKE 124          
BLAST of h2a_astru ame: full vs. nr
Match: gi|961096484|ref|XP_014773904.1| (PREDICTED: histone H2A-like [Octopus bimaculoides] >gi|918317225|gb|KOF86382.1| hypothetical protein OCBIM_22018720mg [Octopus bimaculoides])

HSP 1 Score: 214.927 bits (546), Expect = 7.966e-70
Identity = 107/121 (88.43%), Postives = 113/121 (93.39%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSA 121
            MS RGKGGK K   KSRSS+AGLQFPVGRIHRLLRKGNYA+RVGAGAPVYLA++MEYLAAEVLELAGNAA DNKK+RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKKSA
Sbjct:    1 MSGRGKGGKVKAKPKSRSSKAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKSA 121          
BLAST of h2a_astru ame: full vs. nr
Match: gi|1268080066|ref|XP_022710768.1| (histone H2A-like [Varroa jacobsoni])

HSP 1 Score: 213.772 bits (543), Expect = 1.336e-69
Identity = 105/124 (84.68%), Postives = 115/124 (92.74%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAKKE 124
            MS RGKGGK+K  +K+RSSRAGLQFPVGRIHRLLRKGNYA+RVGAGAPVYLA+++EYLAAEVLELAGNAA DNKK RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKK+ K +
Sbjct:    1 MSGRGKGGKSKTKAKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKTQ 124          
BLAST of h2a_astru ame: full vs. nr
Match: gi|1121089661|ref|XP_019532945.1| (PREDICTED: histone H2A [Aedes albopictus] >gi|1121162063|ref|XP_019526590.1| PREDICTED: histone H2A [Aedes albopictus])

HSP 1 Score: 213.772 bits (543), Expect = 1.558e-69
Identity = 107/123 (86.99%), Postives = 114/123 (92.68%), Query Frame = 0
Query:    1 MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLASLMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGVTIAGGGVLPNIQAVLLPKKSAKK 123
            MS+RGKGG AK   KSRSSRAGLQFPVGR HRLLRKGNYA+RVGAGAPVYLA++MEYLAAEVLELAGNAA DNKK+RI+PRHLQLAIRNDEELNKLL GVTIA GGVLPNIQAVLLPKK+ KK
Sbjct:    1 MSSRGKGGNAKAKPKSRSSRAGLQFPVGRTHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLTGVTIAQGGVLPNIQAVLLPKKTEKK 123          
The following BLAST results are available for this feature:
BLAST of h2a_astru ame: full vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 14
Match NameE-valueIdentityDescription
EMLSAG000000110203.223e-2164.18supercontig:LSalAtl2s:LSalAtl2s741:230720:233818:-... [more]
EMLSAG000000039618.240e-1557.14supercontig:LSalAtl2s:LSalAtl2s2120:1961:2668:-1 g... [more]
EMLSAG000000122181.000e-1263.64supercontig:LSalAtl2s:LSalAtl2s887:424407:426072:-... [more]
EMLSAG000000004321.436e-949.12supercontig:LSalAtl2s:LSalAtl2s1068:354081:357686:... [more]

Pages

back to top
BLAST of h2a_astru ame: full vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|122044770|sp|P02269.2|H2A_ASTRU1.661e-7186.07RecName: Full=Histone H2A[more]
gi|59799575|sp|P69141.2|H2A_STRPU2.030e-6981.15RecName: Full=Histone H2A, embryonic >gi|59799589|... [more]
gi|122005|sp|P13630.2|H2A_PARLI4.188e-6981.15RecName: Full=Histone H2A[more]
gi|462233|sp|P35061.2|H2A_ACRFO5.817e-6981.45RecName: Full=Histone H2A[more]
gi|121987|sp|P16886.2|H2AL_STRPU5.879e-6982.11RecName: Full=Late histone H2A.L3[more]
gi|74752099|sp|Q96QV6.3|H2A1A_HUMAN1.720e-6884.30RecName: Full=Histone H2A type 1-A; AltName: Full=... [more]
gi|122004|sp|P02264.2|H2A_ONCMY3.834e-6882.11RecName: Full=Histone H2A[more]
gi|121993|sp|P27661.2|H2AX_MOUSE8.503e-6883.61RecName: Full=Histone H2AX; Short=H2a/x; AltName: ... [more]
gi|74750623|sp|Q8IUE6.3|H2A2B_HUMAN1.028e-6783.47RecName: Full=Histone H2A type 2-B[more]
gi|81872175|sp|Q64522.3|H2A2B_MOUSE1.859e-6782.64RecName: Full=Histone H2A type 2-B; AltName: Full=... [more]

Pages

back to top
BLAST of h2a_astru ame: full vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|662208256|ref|XP_008477669.1|1.772e-7188.62PREDICTED: histone H2A-like [Diaphorina citri] >gi... [more]
gi|1121115134|ref|XP_019547106.1|1.071e-7087.80PREDICTED: histone H2A-like [Aedes albopictus] >gi... [more]
gi|1321329565|ref|XP_023307652.1|4.559e-7086.99histone H2A [Lucilia cuprina] >gi|1108464811|emb|C... [more]
gi|1005948275|ref|XP_015782447.1|4.609e-7087.80PREDICTED: histone H2A [Tetranychus urticae] >gi|1... [more]
gi|162319741|gb|ABX84387.1|5.679e-7087.80histone H2A, partial [Penaeus monodon][more]
gi|755929542|ref|XP_011311067.1|6.766e-7086.89PREDICTED: histone H2A-like [Fopius arisanus] >gi|... [more]
gi|1121089775|ref|XP_019533532.1|7.805e-7085.48PREDICTED: histone H2A [Aedes albopictus] >gi|1121... [more]
gi|961096484|ref|XP_014773904.1|7.966e-7088.43PREDICTED: histone H2A-like [Octopus bimaculoides]... [more]
gi|1268080066|ref|XP_022710768.1|1.336e-6984.68histone H2A-like [Varroa jacobsoni][more]
gi|1121089661|ref|XP_019532945.1|1.558e-6986.99PREDICTED: histone H2A [Aedes albopictus] >gi|1121... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold791_size96783supercontigscaffold791_size96783:75107..75481 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:nucleosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold791_size96783-processed-gene-0.7-mRNA-1snap_masked-scaffold791_size96783-processed-gene-0.7-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold791_size96783:75107..75481+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold791_size96783-processed-gene-0.7 ID=snap_masked-scaffold791_size96783-processed-gene-0.7|Name=h2a_astru ame: full|organism=Tigriopus kingsejongensis|type=gene|length=375bp|location=Sequence derived from alignment at scaffold791_size96783:75107..75481+ (Tigriopus kingsejongensis)
ATGTCTGCCCGAGGTAAAGGAGGCAAGGCCAAAGAGCCTTCCAAGAGTCG TTCGAGCCGAGCCGGCCTCCAATTCCCTGTTGGCCGCATTCACCGTCTTC TGCGTAAGGGAAACTATGCCAAGCGGGTGGGAGCCGGAGCGCCTGTCTAC CTGGCTTCGCTGATGGAATACCTGGCCGCCGAGGTGCTCGAGCTGGCCGG CAATGCGGCCACCGACAACAAGAAGGCGCGCATCGTGCCGCGCCACCTTC AATTGGCCATCCGGAACGACGAGGAACTCAATAAGCTTCTCCAAGGCGTG ACCATCGCCGGGGGTGGCGTCTTGCCTAACATCCAGGCTGTCCTCTTGCC CAAGAAGTCGGCCAAGAAGGAATAA
back to top
Synonyms
The feature 'h2a_astru ame: full' has the following synonyms
Synonym
Tk03151
Add to Basket