peroxisome proliferator-activated receptor binding, snap_masked-scaffold805_size94795-processed-gene-0.9 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of peroxisome proliferator-activated receptor binding vs. SwissProt
Match: gi|158513152|sp|A1L0Z0.1|MED1_XENTR (RecName: Full=Mediator of RNA polymerase II transcription subunit 1; AltName: Full=Mediator complex subunit 1) HSP 1 Score: 71.633 bits (174), Expect = 1.612e-11 Identity = 29/78 (37.18%), Postives = 51/78 (65.38%), Query Frame = 0 Query: 2 FEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMY---TSAPVCPEPLANKIVQKCMSIPIIMRSLIRHNQT 76 FEV+ S +I+F+HP ++S+ V +D+ + S +SC++Y + A +C + K+VQ+CMSIP+ MR++ R +T Sbjct: 426 FEVAPLSDSCFSISFQHPVNDSLVCVVMDVQDSSHVSCKLYKGLSDALICTDDFITKVVQRCMSIPVTMRAIRRKAET 503
BLAST of peroxisome proliferator-activated receptor binding vs. SwissProt
Match: gi|82184839|sp|Q6INP8.1|MED1_XENLA (RecName: Full=Mediator of RNA polymerase II transcription subunit 1; AltName: Full=Mediator complex subunit 1) HSP 1 Score: 70.4774 bits (171), Expect = 3.471e-11 Identity = 28/78 (35.90%), Postives = 51/78 (65.38%), Query Frame = 0 Query: 2 FEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMY---TSAPVCPEPLANKIVQKCMSIPIIMRSLIRHNQT 76 FEV+ S +I+F+HP ++S+ V +D+ + + +SC++Y + A +C + K+VQ+CMSIP+ MR++ R +T Sbjct: 426 FEVAPLSDSCFSISFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFITKVVQRCMSIPVTMRAIRRKAET 503
BLAST of peroxisome proliferator-activated receptor binding vs. SwissProt
Match: gi|158518535|sp|Q15648.4|MED1_HUMAN (RecName: Full=Mediator of RNA polymerase II transcription subunit 1; AltName: Full=Activator-recruited cofactor 205 kDa component; Short=ARC205; AltName: Full=Mediator complex subunit 1; AltName: Full=Peroxisome proliferator-activated receptor-binding protein; Short=PBP; Short=PPAR-binding protein; AltName: Full=Thyroid hormone receptor-associated protein complex 220 kDa component; Short=Trap220; AltName: Full=Thyroid receptor-interacting protein 2; Short=TR-interacting protein 2; Short=TRIP-2; AltName: Full=Vitamin D receptor-interacting protein complex component DRIP205; AltName: Full=p53 regulatory protein RB18A) HSP 1 Score: 70.0922 bits (170), Expect = 4.972e-11 Identity = 27/78 (34.62%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 2 FEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMY---TSAPVCPEPLANKIVQKCMSIPIIMRSLIRHNQT 76 FEV S +++F+HP ++S+ V +D+ + + +SC++Y + A +C + K+VQ+CMSIP+ MR++ R +T Sbjct: 440 FEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAET 517
BLAST of peroxisome proliferator-activated receptor binding vs. SwissProt
Match: gi|75042546|sp|Q5RES4.1|MED1_PONAB (RecName: Full=Mediator of RNA polymerase II transcription subunit 1; AltName: Full=Mediator complex subunit 1; AltName: Full=Peroxisome proliferator-activated receptor-binding protein; Short=PBP; Short=PPAR-binding protein) HSP 1 Score: 70.0922 bits (170), Expect = 5.188e-11 Identity = 27/78 (34.62%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 2 FEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMY---TSAPVCPEPLANKIVQKCMSIPIIMRSLIRHNQT 76 FEV S +++F+HP ++S+ V +D+ + + +SC++Y + A +C + K+VQ+CMSIP+ MR++ R +T Sbjct: 440 FEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAET 517
BLAST of peroxisome proliferator-activated receptor binding vs. SwissProt
Match: gi|83288389|sp|Q925J9.2|MED1_MOUSE (RecName: Full=Mediator of RNA polymerase II transcription subunit 1; AltName: Full=Mediator complex subunit 1; AltName: Full=Peroxisome proliferator-activated receptor-binding protein; Short=PBP; Short=PPAR-binding protein; AltName: Full=Thyroid hormone receptor-associated protein complex 220 kDa component; Short=Trap220; AltName: Full=Thyroid receptor-interacting protein 2; Short=TR-interacting protein 2; Short=TRIP-2) HSP 1 Score: 70.0922 bits (170), Expect = 5.273e-11 Identity = 27/78 (34.62%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 2 FEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMY---TSAPVCPEPLANKIVQKCMSIPIIMRSLIRHNQT 76 FEV S +++F+HP ++S+ V +D+ + + +SC++Y + A +C + K+VQ+CMSIP+ MR++ R +T Sbjct: 440 FEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAET 517
BLAST of peroxisome proliferator-activated receptor binding vs. SwissProt
Match: gi|121955938|sp|Q172G3.1|MED1_AEDAE (RecName: Full=Mediator of RNA polymerase II transcription subunit 1; AltName: Full=Mediator complex subunit 1) HSP 1 Score: 62.3882 bits (150), Expect = 1.158e-8 Identity = 28/78 (35.90%), Postives = 48/78 (61.54%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMYTSAPVCPEPLANK---IVQKCMSIPIIMRSLIRHNQ 75 +FEV+ ++T++ EHP +ES+A VE DL NI I +++ + E ++ + IVQ+ MSIP+ +R L++ Q Sbjct: 488 VFEVAALSCQYITVSLEHPFEESIAMVEFDLRNILAIQVRVFCNGYESDERISKQVSLIVQRTMSIPVTLRGLMKIWQ 565
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Match: gi|241171661|ref|XP_002410683.1| (peroxisome proliferator-activated receptor binding protein, putative [Ixodes scapularis] >gi|215494920|gb|EEC04561.1| peroxisome proliferator-activated receptor binding protein, putative [Ixodes scapularis]) HSP 1 Score: 93.2041 bits (230), Expect = 1.156e-15 Identity = 37/78 (47.44%), Postives = 60/78 (76.92%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMYT---SAPVCPEPLANKIVQKCMSIPIIMRSLIRHNQ 75 MFEVS T +S+++I+FEHP DES+ATV+L+L+ I+ + C++YT +C + A+K++Q+C+SIP+ MR++IR Q Sbjct: 311 MFEVSTTSISNISISFEHPLDESLATVDLNLNEITSVKCRIYTLNSDISICSDEYASKVMQRCLSIPVTMRAVIRKAQ 388
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Match: gi|1227979892|ref|XP_021921532.1| (mediator of RNA polymerase II transcription subunit 1 isoform X3 [Zootermopsis nevadensis]) HSP 1 Score: 86.2705 bits (212), Expect = 1.744e-13 Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMYTSA---PVCPEPLANKIVQKCMSIPIIMRSLIRHNQT 76 MFEV+ HL+I+FEHP +E+M T ELDL++IS I C++Y + C A+K++Q+C SIP+ MRSLIR Q+ Sbjct: 104 MFEVTALSWQHLSISFEHPLEETMTTAELDLADISNIKCKVYGAGNGENGCTPEHASKVLQRCWSIPVTMRSLIRLWQS 182
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Match: gi|1330877005|gb|PNF15675.1| (hypothetical protein B7P43_G14260, partial [Cryptotermes secundus]) HSP 1 Score: 85.5001 bits (210), Expect = 2.375e-13 Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMYTSA---PVCPEPLANKIVQKCMSIPIIMRSLIRHNQTK 77 M EV+ HL+++FEHP +E+M T ELDL++IS I C++Y ++ C A+K++Q+C SIP+ MRSLIR Q++ Sbjct: 1 MLEVTALSWQHLSVSFEHPLEETMTTAELDLTDISSIKCKVYGASNGENGCTPEHASKVLQRCWSIPVTMRSLIRLWQSQ 80
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Match: gi|1000740266|ref|XP_015592731.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 1 [Cephus cinctus]) HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-13 Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMYTSAPVCPE---PLANKIVQKCMSIPIIMRSLIRHNQTKIKTSVPDPDTEMPMANFSNGTDSGLFQANGNHGSNSLGAHKYGRDHSNG 126 MFEVS H+ ++ EHP +ESMAT ELDL++IS + C++Y E + K++Q+C+SIP+ MR+LI+ + + +T + + NGT A GN+G ++G+ + H NG Sbjct: 488 MFEVSALSWQHIAVSLEHPFEESMATAELDLTDISMLKCKLYGVCLTNTEQTSEMIGKVLQRCLSIPVTMRTLIKTWEGR--------NTSLSNNSGGNGT------ATGNYGQMNMGSGRDQNGHING 602
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Match: gi|1227979882|ref|XP_021921527.1| (mediator of RNA polymerase II transcription subunit 1 isoform X1 [Zootermopsis nevadensis] >gi|1227979884|ref|XP_021921528.1| mediator of RNA polymerase II transcription subunit 1 isoform X1 [Zootermopsis nevadensis] >gi|1227979886|ref|XP_021921529.1| mediator of RNA polymerase II transcription subunit 1 isoform X1 [Zootermopsis nevadensis] >gi|1227979888|ref|XP_021921530.1| mediator of RNA polymerase II transcription subunit 1 isoform X1 [Zootermopsis nevadensis] >gi|646714783|gb|KDR18637.1| Mediator of RNA polymerase II transcription subunit 1 [Zootermopsis nevadensis]) HSP 1 Score: 84.7297 bits (208), Expect = 4.385e-13 Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMYTSA---PVCPEPLANKIVQKCMSIPIIMRSLIRHNQT 76 MFEV+ HL+I+FEHP +E+M T ELDL++IS I C++Y + C A+K++Q+C SIP+ MRSLIR Q+ Sbjct: 422 MFEVTALSWQHLSISFEHPLEETMTTAELDLADISNIKCKVYGAGNGENGCTPEHASKVLQRCWSIPVTMRSLIRLWQS 500
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Match: gi|1227979890|ref|XP_021921531.1| (mediator of RNA polymerase II transcription subunit 1 isoform X2 [Zootermopsis nevadensis]) HSP 1 Score: 84.7297 bits (208), Expect = 4.537e-13 Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMYTSA---PVCPEPLANKIVQKCMSIPIIMRSLIRHNQT 76 MFEV+ HL+I+FEHP +E+M T ELDL++IS I C++Y + C A+K++Q+C SIP+ MRSLIR Q+ Sbjct: 421 MFEVTALSWQHLSISFEHPLEETMTTAELDLADISNIKCKVYGAGNGENGCTPEHASKVLQRCWSIPVTMRSLIRLWQS 499
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Match: gi|998517913|ref|XP_015519810.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 1 [Neodiprion lecontei]) HSP 1 Score: 84.3445 bits (207), Expect = 5.760e-13 Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMY---TSAPVCPEPLANKIVQKCMSIPIIMRSLIR 72 MFEVS HL+++ EHP +E+MAT ELDLS+IS + C++Y S LA K++QKC+SIP+ MR+LI+ Sbjct: 451 MFEVSALSWQHLSVSLEHPFEETMATAELDLSDISNLKCKLYGVSMSNSESSSELAGKVLQKCLSIPVTMRTLIK 525
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Match: gi|817065081|ref|XP_012254314.1| (mediator of RNA polymerase II transcription subunit 1 [Athalia rosae]) HSP 1 Score: 83.9593 bits (206), Expect = 8.041e-13 Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMY---TSAPVCPEPLANKIVQKCMSIPIIMRSLIRHNQTKIKTSV---------------PDPDTE------MPMANFSNGTDSGLFQANGNHGSNSLGAHK--------YGRDHSNGFHQFTGNA 134 MFEVS HL+++ EHP +E+MAT ELDLS+IS + C++Y S LA K++Q+C+SIP+ MR+LI+ + + T+ P D MP +F+NG D + Q G +G+ +G + G ++S GF F+GN+ Sbjct: 452 MFEVSALSWQHLSVSLEHPFEETMATAELDLSDISSLKCKLYGVSMSNSESSSELAGKVLQRCLSIPVTMRTLIKTWEGRNSTNSNSMGSNGGNYNVNLGPGRDQNGHNGSGMP--DFNNG-DVKIKQEPGLNGNGGIGRQQSSQQSFLEAGTENSIGFPSFSGNS 614
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Match: gi|925671118|gb|KOX68963.1| (Mediator of RNA polymerase II transcription subunit 1 [Melipona quadrifasciata]) HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-12 Identity = 44/137 (32.12%), Postives = 78/137 (56.93%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMYTSAPVCPEP---LANKIVQKCMSIPIIMRSLIRHNQTKIKTSVPDPDTEMPMANFSNGTDSGLFQANGNHGSNSLGAHKYGRDHSNGFHQFTGNA 134 +FEVS H++++ EHP +E+MAT ELDL++IS + C++Y + E L K++QKC+SIP+ MR L++ +++ D+ M N ++G +G + N G + + G ++S GF ++G + Sbjct: 388 IFEVSALSWQHISVSLEHPFEETMATAELDLTDISALKCKLYGISITNTEQTSDLTGKVLQKCLSIPLTMRILMKSWESR--------DSLSTMNNLNSG--NGNYNVNHGSGKDPSSQNDAGTENSIGFPSYSGQS 514
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Match: gi|915659352|gb|KOC62331.1| (Mediator of RNA polymerase II transcription subunit 1 [Habropoda laboriosa]) HSP 1 Score: 82.8037 bits (203), Expect = 1.809e-12 Identity = 48/141 (34.04%), Postives = 80/141 (56.74%), Query Frame = 0 Query: 1 MFEVSCTDLSHLTITFEHPSDESMATVELDLSNISQISCQMYTSAPVCPEP---LANKIVQKCMSIPIIMRSLIRHNQTKIKTSVPDPDTEMPMANFSNGTDSGLFQANGNHGSNSLGAHK----YGRDHSNGFHQFTGNA 134 +FEVS H++++ EHP +E+MAT ELDL++IS + C++Y + E L K++QKC+SIP+ MR L++ +++ D+ M N ++G NGN+ N LG+ K G ++S GF ++G + Sbjct: 443 IFEVSALSWQHISVSLEHPFEETMATAELDLTDISALKCKLYGISITNTEQTSDLTGKVLQKCLSIPLTMRILMKSWESR--------DSLSTMNNLNSG--------NGNYNVN-LGSGKDQNNAGTENSIGFPSYSGQS 566 The following BLAST results are available for this feature:
BLAST of peroxisome proliferator-activated receptor binding vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 0
BLAST of peroxisome proliferator-activated receptor binding vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 6
BLAST of peroxisome proliferator-activated receptor binding vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold805_size94795:84710..87374- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold805_size94795-processed-gene-0.9 ID=snap_masked-scaffold805_size94795-processed-gene-0.9|Name=peroxisome proliferator-activated receptor binding|organism=Tigriopus kingsejongensis|type=gene|length=2665bp|location=Sequence derived from alignment at scaffold805_size94795:84710..87374- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'peroxisome proliferator-activated receptor binding' has the following synonyms
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