glutamate-gated chloride channel-like, snap_masked-scaffold807_size94382-processed-gene-0.5 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of glutamate-gated chloride channel-like vs. L. salmonis genes
Match: EMLSAG00000006195 (supercontig:LSalAtl2s:LSalAtl2s339:168354:194952:-1 gene:EMLSAG00000006195 transcript:EMLSAT00000006195 description:"maker-LSalAtl2s339-augustus-gene-2.20") HSP 1 Score: 99.7525 bits (247), Expect = 9.495e-26 Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 0 Query: 66 INYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKMIQNFTFLL 128 +NYR+EEKKILDS+LGPDVYDKRIRPSGLN TD+A+++ VN+++RSF+ IDDVKM +F L Sbjct: 39 VNYRQEEKKILDSVLGPDVYDKRIRPSGLNSTDSASLVTVNIFVRSFSNIDDVKMEYSFQITL 101
BLAST of glutamate-gated chloride channel-like vs. L. salmonis genes
Match: EMLSAG00000002530 (supercontig:LSalAtl2s:LSalAtl2s14:125553:213163:-1 gene:EMLSAG00000002530 transcript:EMLSAT00000002530 description:"maker-LSalAtl2s14-augustus-gene-3.12") HSP 1 Score: 93.5893 bits (231), Expect = 2.416e-24 Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 0 Query: 71 EEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKMIQNFTFLLPD 130 ++KKILD+ILG DVYD RIRPSG NGTD ATIIVVNLYIRSFAKIDDVKM + FLL + Sbjct: 22 KKKKILDNILGKDVYDNRIRPSGRNGTDTATIIVVNLYIRSFAKIDDVKMFKTKMFLLKE 81
BLAST of glutamate-gated chloride channel-like vs. L. salmonis genes
Match: EMLSAG00000004922 (supercontig:LSalAtl2s:LSalAtl2s259:1101483:1144622:-1 gene:EMLSAG00000004922 transcript:EMLSAT00000004922 description:"maker-LSalAtl2s259-augustus-gene-11.13") HSP 1 Score: 90.5077 bits (223), Expect = 1.892e-23 Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 0 Query: 61 PRSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKM 120 PR INYR+EEK+ILD IL +VYD+R+RPSG+N TD TI+ VNLY+RSF KIDDVKM Sbjct: 166 PRPALINYRQEEKRILDRILDSEVYDRRMRPSGMNSTDDPTIVNVNLYVRSFEKIDDVKM 225
BLAST of glutamate-gated chloride channel-like vs. L. salmonis genes
Match: EMLSAG00000011971 (supercontig:LSalAtl2s:LSalAtl2s84:948400:1079594:1 gene:EMLSAG00000011971 transcript:EMLSAT00000011971 description:"maker-LSalAtl2s84-augustus-gene-10.5") HSP 1 Score: 75.8702 bits (185), Expect = 1.809e-17 Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 0 Query: 66 INYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKM 120 INYR++EK++LDSILG YDKRIRPSG N TD I VN+Y+R+ ++IDDVKM Sbjct: 6 INYRQKEKQVLDSILGTG-YDKRIRPSGKNDTDGPATINVNIYLRTISRIDDVKM 59
BLAST of glutamate-gated chloride channel-like vs. SwissProt
Match: gi|62901525|sp|Q94900.2|GLUCL_DROME (RecName: Full=Glutamate-gated chloride channel; Short=DrosGluCl; Flags: Precursor) HSP 1 Score: 77.411 bits (189), Expect = 1.814e-16 Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0 Query: 59 SIPRSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKM 120 S+ + IN+RE+EKK+LD ILG YD RIRPSG+NGTD I+ +NL++RS I D+KM Sbjct: 20 SLANNAKINFREKEKKVLDQILGAGKYDARIRPSGINGTDGPAIVRINLFVRSIMTISDIKM 81
BLAST of glutamate-gated chloride channel-like vs. nr
Match: gi|1325313968|ref|XP_023338657.1| (LOW QUALITY PROTEIN: glutamate-gated chloride channel-like [Eurytemora affinis]) HSP 1 Score: 100.908 bits (250), Expect = 2.605e-22 Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0 Query: 62 RSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKM 120 R G INYREEEKKILD ILG VYD RIRPSG NGTD AT+I+V+LY+RSFAKIDDVKM Sbjct: 25 RQGLINYREEEKKILDEILGKGVYDNRIRPSGTNGTDDATLIMVDLYVRSFAKIDDVKM 83
BLAST of glutamate-gated chloride channel-like vs. nr
Match: gi|1274141509|ref|XP_022815568.1| (glutamate-gated chloride channel isoform X5 [Spodoptera litura]) HSP 1 Score: 90.8929 bits (224), Expect = 9.312e-19 Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 0 Query: 45 FILLSALHLSRSMRSIPRSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKM 120 F+LL+ +HL+ M G IN+RE+EK+ILD ILGP YD RIRPSG+NGTD ++ VN+++RS +KIDDV M Sbjct: 12 FLLLAIIHLTECMNG----GKINFREKEKQILDQILGPGRYDARIRPSGINGTDGPAVVSVNIFVRSISKIDDVTM 83
BLAST of glutamate-gated chloride channel-like vs. nr
Match: gi|1274141503|ref|XP_022815565.1| (glutamate-gated chloride channel isoform X2 [Spodoptera litura]) HSP 1 Score: 90.8929 bits (224), Expect = 9.555e-19 Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 0 Query: 45 FILLSALHLSRSMRSIPRSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKM 120 F+LL+ +HL+ M G IN+RE+EK+ILD ILGP YD RIRPSG+NGTD ++ VN+++RS +KIDDV M Sbjct: 12 FLLLAIIHLTECMNG----GKINFREKEKQILDQILGPGRYDARIRPSGINGTDGPAVVSVNIFVRSISKIDDVTM 83
BLAST of glutamate-gated chloride channel-like vs. nr
Match: gi|1325298942|ref|XP_023331534.1| (glutamate-gated chloride channel-like [Eurytemora affinis]) HSP 1 Score: 89.3521 bits (220), Expect = 2.589e-18 Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 0 Query: 62 RSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKMIQNFTFLL 128 R +NYR+ EK ILD I+GP +YD RIRP+G+NGTD AT + VN++ RSF+KIDDVKM +F L Sbjct: 30 RKEEVNYRQIEKNILDEIMGPKIYDARIRPAGVNGTDEATFVYVNIFFRSFSKIDDVKMEYSFQITL 96
BLAST of glutamate-gated chloride channel-like vs. nr
Match: gi|1233185089|ref|XP_022194163.1| (glutamate-gated chloride channel-like, partial [Nilaparvata lugens]) HSP 1 Score: 82.8037 bits (203), Expect = 2.892e-18 Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0 Query: 63 SGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKM 120 SG INYRE+EK++LD ILGP YD RIRPSG+N TD I+ VNL++RS A I D+KM Sbjct: 28 SGKINYREKEKQVLDQILGPSSYDARIRPSGVNQTDGPAIVRVNLFVRSIATISDIKM 85
BLAST of glutamate-gated chloride channel-like vs. nr
Match: gi|1247039117|gb|PCG74232.1| (hypothetical protein B5V51_13657 [Heliothis virescens]) HSP 1 Score: 88.1965 bits (217), Expect = 8.900e-18 Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 0 Query: 46 ILLSALHLSRSMRSIPRSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKM 120 +LL HLS M G IN+RE+EK+ILD ILGP YD RIRPSG+NGTD ++ VN+++RS +KIDDV M Sbjct: 13 VLLFVTHLSECMNG----GKINFREKEKQILDQILGPGRYDARIRPSGINGTDGPAVVSVNIFVRSISKIDDVTM 83
BLAST of glutamate-gated chloride channel-like vs. nr
Match: gi|1199391995|ref|XP_021191010.1| (glutamate-gated chloride channel isoform X2 [Helicoverpa armigera] >gi|1247039119|gb|PCG74234.1| hypothetical protein B5V51_13657 [Heliothis virescens]) HSP 1 Score: 87.8113 bits (216), Expect = 1.005e-17 Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 0 Query: 46 ILLSALHLSRSMRSIPRSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKM 120 +LL HLS M G IN+RE+EK+ILD ILGP YD RIRPSG+NGTD ++ VN+++RS +KIDDV M Sbjct: 13 VLLFVTHLSECMNG----GKINFREKEKQILDQILGPGRYDARIRPSGINGTDGPAVVSVNIFVRSISKIDDVTM 83
BLAST of glutamate-gated chloride channel-like vs. nr
Match: gi|1199392003|ref|XP_021191014.1| (glutamate-gated chloride channel isoform X6 [Helicoverpa armigera]) HSP 1 Score: 87.8113 bits (216), Expect = 1.017e-17 Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 0 Query: 46 ILLSALHLSRSMRSIPRSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTDAATIIVVNLYIRSFAKIDDVKM 120 +LL HLS M G IN+RE+EK+ILD ILGP YD RIRPSG+NGTD ++ VN+++RS +KIDDV M Sbjct: 13 VLLFVTHLSECMNG----GKINFREKEKQILDQILGPGRYDARIRPSGINGTDGPAVVSVNIFVRSISKIDDVTM 83
BLAST of glutamate-gated chloride channel-like vs. nr
Match: gi|768428215|ref|XP_011555235.1| (PREDICTED: glutamate-gated chloride channel-like isoform X4 [Plutella xylostella]) HSP 1 Score: 87.8113 bits (216), Expect = 1.122e-17 Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 0 Query: 41 LFTFFILLSALHLSRSMRSIPRSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGT-DAATIIVVNLYIRSFAKIDDVKM 120 LF F+L A HL+ + + IN+RE+EK+ILD ILGP YD RIRPSG+NGT DA T++ VNLY+RS +KIDD KM Sbjct: 10 LFVLFLLYCA-HLTECV-----NAKINFREKEKQILDQILGPGRYDARIRPSGINGTGDAPTLVRVNLYLRSISKIDDYKM 84
BLAST of glutamate-gated chloride channel-like vs. nr
Match: gi|1274141507|ref|XP_022815567.1| (glutamate-gated chloride channel isoform X4 [Spodoptera litura]) HSP 1 Score: 87.8113 bits (216), Expect = 1.222e-17 Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 0 Query: 45 FILLSALHLSRSMRSIPRSGPINYREEEKKILDSILGPDVYDKRIRPSGLNGTD-AATIIVVNLYIRSFAKIDDVKM 120 F+LL+ +HL+ M G IN+RE+EK+ILD ILGP YD RIRPSG+NGT A T++ VN+Y+RS +KIDD KM Sbjct: 12 FLLLAIIHLTECMNG----GKINFREKEKQILDQILGPGRYDARIRPSGINGTGYAPTLVHVNMYLRSISKIDDYKM 84 The following BLAST results are available for this feature:
BLAST of glutamate-gated chloride channel-like vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 4
BLAST of glutamate-gated chloride channel-like vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 1
BLAST of glutamate-gated chloride channel-like vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold807_size94382:61910..66195+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold807_size94382-processed-gene-0.5 ID=snap_masked-scaffold807_size94382-processed-gene-0.5|Name=glutamate-gated chloride channel-like|organism=Tigriopus kingsejongensis|type=gene|length=4286bp|location=Sequence derived from alignment at scaffold807_size94382:61910..66195+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'glutamate-gated chloride channel-like' has the following synonyms
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