hypothetical protein DAPPUDRAFT_309288, snap_masked-scaffold87_size395581-processed-gene-0.7 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. L. salmonis genes
Match: EMLSAG00000000734 (supercontig:LSalAtl2s:LSalAtl2s1118:124831:127769:1 gene:EMLSAG00000000734 transcript:EMLSAT00000000734 description:"maker-LSalAtl2s1118-augustus-gene-0.17") HSP 1 Score: 145.591 bits (366), Expect = 1.431e-42 Identity = 81/158 (51.27%), Postives = 104/158 (65.82%), Query Frame = 0
Query: 170 EGYAQPSSGYAQPSGYGGGYDVGYEEEGGGGGKFDISALIIPLLIVFGLSLLFPTITSVAVGA-TGRRKRDL-----EGANPMSDVAERVNAIYMAVVESEECLERVACEIGGLATDVGLKDNALTKMTDPFVPLKYKKYMTQFKTGQNCHKLKCGQL 321
+GY PSSGY + SG G D G E E F +A+I+P+L + GL+LLFPTIT+V V GRRKR L EG+ PM V +RVN IY +++ESEEC+ER+ACE+GG+A D GL + +TKM DP V KYK Y QF +G+NC K+KCG
Sbjct: 67 QGYGAPSSGYVESSGTGISGDYGDEPE------FPFAAIILPILALIGLALLFPTITTVGVVPPVGRRKRSLIDGSEEGSGPMGRVLDRVNDIYFSMIESEECMERIACEVGGIAKDFGLNSSPVTKMIDPLVTKKYKTYYKQFASGRNCQKIKCGSF 218
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. L. salmonis genes
Match: EMLSAG00000005963 (supercontig:LSalAtl2s:LSalAtl2s321:818470:836551:1 gene:EMLSAG00000005963 transcript:EMLSAT00000005963 description:"maker-LSalAtl2s321-augustus-gene-8.27") HSP 1 Score: 71.633 bits (174), Expect = 6.591e-14 Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 34 NRDGAGHSHGSQQAAPASSSAGGSYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSYHA 120
N +G +H + Q + + +YG+P+ P+Y AP P Y AP P+Y++P P+Y AP P+YGAPEP+Y AP P+YG+P +P+Y++
Sbjct: 140 NPHNSGPTHSNYQVSSHQAHHKPTYGAPK-PTYDAPQ-PIYGAPKPTYNSPKPTYDAPK-PTYGAPEPTYDAPKPTYGAP-KPTYNS 222 HSP 2 Score: 68.5514 bits (166), Expect = 5.338e-13 Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 0
Query: 57 SYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAE---PSYHA--TGYGDEPSGG 130
+YG+P+ P+Y AP P+Y AP P+Y++P P+Y AP P+YGAP+P Y AP P+YG+P+ PSY+A + YG + S G
Sbjct: 198 TYGAPE-PTYDAPK-PTYGAPKPTYNSPKPTYGAPK-PTYGAPKPIYKAPKPTYGAPSSYGAPSYNAPSSSYGSQDSYG 273 HSP 3 Score: 66.6254 bits (161), Expect = 2.631e-12 Identity = 33/63 (52.38%), Postives = 50/63 (79.37%), Query Frame = 0
Query: 58 YGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSYHA 120
YG+P+ P+Y++P P+Y AP P+Y AP P+Y AP P+YGAP+P+Y++P P+YG+P +P+Y A
Sbjct: 178 YGAPK-PTYNSPK-PTYDAPKPTYGAPEPTYDAPK-PTYGAPKPTYNSPKPTYGAP-KPTYGA 236
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. SwissProt
Match: gi|133328|sp|P14248.1|RPB1_PLAFD (RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III largest subunit) HSP 1 Score: 57.7658 bits (138), Expect = 5.651e-8 Identity = 28/62 (45.16%), Postives = 33/62 (53.23%), Query Frame = 0
Query: 60 SPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSYHAT 121
S +P YS P +P YS +P YS +P YS P +P Y P YS SP Y SP P Y T
Sbjct: 2291 SVTSPKYS-PTSPKYSPTSPKYSPTSPKYS-PTSPKYSPTSPKYSPTSPKY-SPTSPKYSPT 2349
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|1325327512|ref|XP_023345612.1| (cardiomyopathy-associated protein 5-like, partial [Eurytemora affinis]) HSP 1 Score: 73.1738 bits (178), Expect = 1.618e-10 Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 49 PASSSAGGSYGSPQAPSYSAPAA------PSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSYHATGYG 124
P+ + SY +P+ PSY AP + PSY AP PSY AP P+Y AP PSY APEPSY AP PSY P EPSYHA+ +G
Sbjct: 471 PSYHALEPSYHAPE-PSYHAPESNYHAPEPSYHAPVPSYHAPEPNYHAPE-PSYHAPEPSYHAPEPSYH-PPEPSYHASEHG 549 HSP 2 Score: 62.7734 bits (151), Expect = 4.088e-7 Identity = 43/79 (54.43%), Postives = 49/79 (62.03%), Query Frame = 0
Query: 48 APASSSAGGSYGSPQAPSYSAPAA------PSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSYHA 120
AP ++S+ SY Q PSY AP + PSY AP PSY A PSY AP PSY APE +Y AP PSY +P PSYHA
Sbjct: 437 APLTTSSPYSY---QEPSYHAPESNYHAPEPSYHAPDPSYHALEPSYHAPE-PSYHAPESNYHAPEPSYHAPV-PSYHA 510
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|1130243268|ref|XP_019764171.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Dendroctonus ponderosae]) HSP 1 Score: 70.4774 bits (171), Expect = 1.089e-9 Identity = 53/85 (62.35%), Postives = 57/85 (67.06%), Query Frame = 0
Query: 48 APASSSAGGSYGSPQAPSYSAPA----APSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSYHATGYGDEPS 128
AP+ S+ SY +P APSYS PA APSYSAPAPSYSAPAPSYSAPA SY AP PSYS P+ SY SP SY Y PS
Sbjct: 398 APSYSAPTPSYSAP-APSYSEPAPSYSAPSYSAPAPSYSAPAPSYSAPAH-SYSAPAPSYSKPAASYNSPPTSSYEPEHYPAAPS 480 HSP 2 Score: 70.0922 bits (170), Expect = 1.193e-9 Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 0
Query: 48 APASSSAGGSYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPA----APSYGAPEPSYSAPSPSYGSPAEPSY 118
AP+ S+ SY +P APSYSAP PSYSAPAPSYS PAPSYSAP+ APSY AP PSYSAP+ SY +PA PSY
Sbjct: 384 APSYSAPAPSYSAP-APSYSAP-TPSYSAPAPSYSEPAPSYSAPSYSAPAPSYSAPAPSYSAPAHSYSAPA-PSY 455 HSP 3 Score: 69.3218 bits (168), Expect = 2.364e-9 Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 0
Query: 70 AAPSYSAPAPSYSAPAPSYSAPA------APSYGAPEPSYSAPSPSYGSPAEPSYHATGY 123
+APSYSAPAPSYSAPAPSYSAPA APSY AP PSYSAP+PSY PA PSY A Y
Sbjct: 369 SAPSYSAPAPSYSAPAPSYSAPAPSYSAPAPSYSAPTPSYSAPAPSYSEPA-PSYSAPSY 427
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|755943852|ref|XP_011299263.1| (PREDICTED: extensin-1-like [Fopius arisanus]) HSP 1 Score: 68.5514 bits (166), Expect = 3.502e-9 Identity = 50/82 (60.98%), Postives = 54/82 (65.85%), Query Frame = 0
Query: 41 SHGSQQAAPASS----SAGGSYGSPQAPSYSAPA-APSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPS 117
S+G AAPA S + SYG+P APSY PA APSY PAPSY PAPSY P APSYG P PSY P+PSYG PA PS
Sbjct: 98 SYGPPVAAPAPSYGPPAPAPSYGAP-APSYGPPAPAPSYGPPAPSYGPPAPSY-GPPAPSYGPPAPSYGPPAPSYGPPAPPS 177 HSP 2 Score: 63.5438 bits (153), Expect = 1.466e-7 Identity = 51/84 (60.71%), Postives = 54/84 (64.29%), Query Frame = 0
Query: 49 PASSSAGGSYGSP---QAPSYSAPA-APSYSAPAPSY--SAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSY--HATGYG 124
P +S+ SYG P APSY PA APSY APAPSY APAPSY P APSYG P PSY P+PSYG PA PSY A YG
Sbjct: 90 PPASAPAPSYGPPVAAPAPSYGPPAPAPSYGAPAPSYGPPAPAPSY-GPPAPSYGPPAPSYGPPAPSYGPPA-PSYGPPAPSYG 171
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|1048057965|ref|XP_017462304.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial [Rhagoletis zephyria]) HSP 1 Score: 65.0846 bits (157), Expect = 6.095e-8 Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0
Query: 55 GGSYGSPQAPSYSAPA----APSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPA 114
SY +P APSYSAPA APSYSAPAPSYSAPAPSYSAP APSY AP PSYSAP+PSY +PA
Sbjct: 360 APSYSAP-APSYSAPAPAYEAPSYSAPAPSYSAPAPSYSAP-APSYSAPAPSYSAPAPSYSAPA 421 HSP 2 Score: 63.1586 bits (152), Expect = 2.312e-7 Identity = 66/141 (46.81%), Postives = 73/141 (51.77%), Query Frame = 0
Query: 48 APASSSAGGSYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPA---------------------------APSYGAPEPSYSAPSPSYGSPAEPSYHATGYGDEPSGGGFDLTALIIPLLAL-IGLSLLFPTFVSLTTV 160
AP+ S+ SY +P APSYSAPA PSYSAPAPSYSAPAPSYSAPA APSY AP PSYSAP+PSY +PA PSY A + P A GLS FPTF + T
Sbjct: 379 APSYSAPAPSYSAP-APSYSAPA-PSYSAPAPSYSAPAPSYSAPAASYSSPQLSYSKKVESYNLTAPVYQAPAPSYSAPAPSYSAPAPSYSAPA-PSYSAPA------------PSYSAPSSAYRRGLSRRFPTFRGVNTF 504
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|195047496|ref|XP_001992353.1| (GH24704 [Drosophila grimshawi] >gi|193893194|gb|EDV92060.1| GH24704 [Drosophila grimshawi]) HSP 1 Score: 64.6994 bits (156), Expect = 8.933e-8 Identity = 50/72 (69.44%), Postives = 55/72 (76.39%), Query Frame = 0
Query: 51 SSSAGGSYGSPQAPSYSAPAAPSYSAPAPSYSAP-APSYSAPAAPSYGAP-EPSYSAPSPSYGSPAEPSYHA 120
S+ A SY +P+ PSYSAPAAPSYSAPA SYSAP APSYSA PSY AP PSYSAP+ SY +PA PSY A
Sbjct: 464 SAPAAPSYSAPKGPSYSAPAAPSYSAPAQSYSAPAAPSYSASKGPSYSAPAAPSYSAPAQSYSAPAAPSYSA 535
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|780036519|ref|XP_011667470.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform X2 [Strongylocentrotus purpuratus]) HSP 1 Score: 64.3142 bits (155), Expect = 1.507e-7 Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 0
Query: 47 AAPASSSAGGSYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPS 117
++P S A SY SP +P YS P++P YS +P+YS +P YS PA+P+Y P YS SP+Y SP P
Sbjct: 1739 SSPTYSPASPSY-SPTSPKYS-PSSPKYSPTSPTYSPTSPKYS-PASPTYSPTSPKYSPSSPTY-SPTSPK 1805
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|115910670|ref|XP_788781.2| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform X1 [Strongylocentrotus purpuratus]) HSP 1 Score: 64.3142 bits (155), Expect = 1.515e-7 Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 0
Query: 47 AAPASSSAGGSYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPS 117
++P S A SY SP +P YS P++P YS +P+YS +P YS PA+P+Y P YS SP+Y SP P
Sbjct: 1824 SSPTYSPASPSY-SPTSPKYS-PSSPKYSPTSPTYSPTSPKYS-PASPTYSPTSPKYSPSSPTY-SPTSPK 1890
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|1078796345|ref|XP_018497665.1| (PREDICTED: secreted protein PRY1 [Galendromus occidentalis]) HSP 1 Score: 62.7734 bits (151), Expect = 2.012e-7 Identity = 68/249 (27.31%), Postives = 104/249 (41.77%), Query Frame = 0
Query: 95 SYGAPEPSYSAPSPSYGSPAEPS-YHATGYGDEPSGGGFDLTALIIPLLALIGLSLLFPTFVSLTTVRKRRAVDEGEGYAQPSSGYAQPSGY--GGGYDVG-------YEEEGGGGGKF-DISALIIPLLIVFGLSLLFPTITSVAVGATGRRKRDLEG-----ANPMSDVAERVNA---IYMAVVESEECLERVACEIGGLATDVGLKDNALTKMTDPFVPLKYKKYMTQFKTG------QNCHKLKC 318
S+G + +Y +P+ SYG+ A PS +H Y G P A G L P+ L+ G P SGY Y G Y Y +F + ++I+PL+ + L+ L P++T++ G + KR +E AN +++ AER+ IY A VES++C+ R+ CE+G + V K AL + + P M FK G C + KC
Sbjct: 141 SHGPQQATYDSPASSYGNSAYPSQFHQATYASHQGHAG-------SPSYAYTGS--LLPSDSQLS-------AQYASGSGAPVSGYQGQGSYPAQGTYQASPSTFQPSYAPASDSKSRFYGLGSVIMPLVGLGALAFLLPSVTNL--GGKKKTKRSVENNDANKANGVAEYAERLEKYFKIYRAAVESDDCMNRIVCELGDSVSTVRGK-AALLALFEKVAPQWMTGKMGVFKFGALDSKSAKCARYKC 370
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|241959608|ref|XP_002422523.1| (DNA-directed RNA polymerase II subunit, putative [Candida dubliniensis CD36] >gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida dubliniensis CD36]) HSP 1 Score: 62.7734 bits (151), Expect = 4.611e-7 Identity = 34/73 (46.58%), Postives = 40/73 (54.79%), Query Frame = 0
Query: 46 QAAPASSSAGGSYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSY 118
Q +P S S SP +P YS P +PSYS +P YS +PSYS P +P Y P YS SP Y SP P Y
Sbjct: 1661 QYSPTSPSY-----SPTSPQYS-PTSPSYSPTSPQYSPTSPSYS-PTSPQYSPTSPQYSPTSPRY-SPGSPGY 1725
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|1083281533|ref|XP_018589196.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Scleropages formosus]) HSP 1 Score: 62.3882 bits (150), Expect = 5.405e-7 Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 0
Query: 48 APASSSAGGSYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYG--SPAEPSYHATGYGDEPSGGGFDLTA 136
+P S +Y SP P YS P +P+YS +P+Y+ +P YS P +P+Y P YS SP+Y SP +Y T G P+ + LT+
Sbjct: 1869 SPKYSPTSPTY-SPTTPKYS-PTSPTYSPTSPTYTPTSPKYS-PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTS 1956 The following BLAST results are available for this feature:
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 1
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold87_size395581:56069..60595+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold87_size395581-processed-gene-0.7 ID=snap_masked-scaffold87_size395581-processed-gene-0.7|Name=hypothetical protein DAPPUDRAFT_309288|organism=Tigriopus kingsejongensis|type=gene|length=4527bp|location=Sequence derived from alignment at scaffold87_size395581:56069..60595+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'hypothetical protein DAPPUDRAFT_309288' has the following synonyms
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