hypothetical protein DAPPUDRAFT_309288, snap_masked-scaffold87_size395581-processed-gene-0.7 (gene) Tigriopus kingsejongensis

Overview
Namehypothetical protein DAPPUDRAFT_309288
Unique Namesnap_masked-scaffold87_size395581-processed-gene-0.7
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of hypothetical protein DAPPUDRAFT_309288 vs. L. salmonis genes
Match: EMLSAG00000000734 (supercontig:LSalAtl2s:LSalAtl2s1118:124831:127769:1 gene:EMLSAG00000000734 transcript:EMLSAT00000000734 description:"maker-LSalAtl2s1118-augustus-gene-0.17")

HSP 1 Score: 145.591 bits (366), Expect = 1.431e-42
Identity = 81/158 (51.27%), Postives = 104/158 (65.82%), Query Frame = 0 
Query:  170 EGYAQPSSGYAQPSGYGGGYDVGYEEEGGGGGKFDISALIIPLLIVFGLSLLFPTITSVAVGA-TGRRKRDL-----EGANPMSDVAERVNAIYMAVVESEECLERVACEIGGLATDVGLKDNALTKMTDPFVPLKYKKYMTQFKTGQNCHKLKCGQL 321
            +GY  PSSGY + SG G   D G E E      F  +A+I+P+L + GL+LLFPTIT+V V    GRRKR L     EG+ PM  V +RVN IY +++ESEEC+ER+ACE+GG+A D GL  + +TKM DP V  KYK Y  QF +G+NC K+KCG  
Sbjct:   67 QGYGAPSSGYVESSGTGISGDYGDEPE------FPFAAIILPILALIGLALLFPTITTVGVVPPVGRRKRSLIDGSEEGSGPMGRVLDRVNDIYFSMIESEECMERIACEVGGIAKDFGLNSSPVTKMIDPLVTKKYKTYYKQFASGRNCQKIKCGSF 218
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BLAST of hypothetical protein DAPPUDRAFT_309288 vs. L. salmonis genes
Match: EMLSAG00000005963 (supercontig:LSalAtl2s:LSalAtl2s321:818470:836551:1 gene:EMLSAG00000005963 transcript:EMLSAT00000005963 description:"maker-LSalAtl2s321-augustus-gene-8.27")

HSP 1 Score: 71.633 bits (174), Expect = 6.591e-14
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 0 
Query:   34 NRDGAGHSHGSQQAAPASSSAGGSYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSYHA 120
            N   +G +H + Q +   +    +YG+P+ P+Y AP  P Y AP P+Y++P P+Y AP  P+YGAPEP+Y AP P+YG+P +P+Y++
Sbjct:  140 NPHNSGPTHSNYQVSSHQAHHKPTYGAPK-PTYDAPQ-PIYGAPKPTYNSPKPTYDAPK-PTYGAPEPTYDAPKPTYGAP-KPTYNS 222

HSP 2 Score: 68.5514 bits (166), Expect = 5.338e-13
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 0 
Query:   57 SYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAE---PSYHA--TGYGDEPSGG 130
            +YG+P+ P+Y AP  P+Y AP P+Y++P P+Y AP  P+YGAP+P Y AP P+YG+P+    PSY+A  + YG + S G
Sbjct:  198 TYGAPE-PTYDAPK-PTYGAPKPTYNSPKPTYGAPK-PTYGAPKPIYKAPKPTYGAPSSYGAPSYNAPSSSYGSQDSYG 273

HSP 3 Score: 66.6254 bits (161), Expect = 2.631e-12
Identity = 33/63 (52.38%), Postives = 50/63 (79.37%), Query Frame = 0 
Query:   58 YGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSYHA 120
            YG+P+ P+Y++P  P+Y AP P+Y AP P+Y AP  P+YGAP+P+Y++P P+YG+P +P+Y A
Sbjct:  178 YGAPK-PTYNSPK-PTYDAPKPTYGAPEPTYDAPK-PTYGAPKPTYNSPKPTYGAP-KPTYGA 236
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BLAST of hypothetical protein DAPPUDRAFT_309288 vs. SwissProt
Match: gi|133328|sp|P14248.1|RPB1_PLAFD (RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA polymerase II subunit B1; AltName: Full=DNA-directed RNA polymerase III largest subunit)

HSP 1 Score: 57.7658 bits (138), Expect = 5.651e-8
Identity = 28/62 (45.16%), Postives = 33/62 (53.23%), Query Frame = 0 
Query:   60 SPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSYHAT 121
            S  +P YS P +P YS  +P YS  +P YS P +P Y    P YS  SP Y SP  P Y  T
Sbjct: 2291 SVTSPKYS-PTSPKYSPTSPKYSPTSPKYS-PTSPKYSPTSPKYSPTSPKY-SPTSPKYSPT 2349
[Close]
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|750521743|ref|WP_040803612.1| (RDD family protein [Nocardia concava])

HSP 1 Score: 60.8474 bits (146), Expect = 5.725e-7
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 0 
Query:   44 SQQAAPASSSAGGSYGSPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPA-----------APSYGAPEPSYSAPSPSYGSPAEPSYHAT-GYGDEPSGGGFDLTALII 139
            + Q AP   +    YG+PQ P+Y AP  P Y AP P+Y AP P+Y  PA            P+YGAP+P+Y AP P +G+P +P Y    GYG + +  G  + A +I
Sbjct:   20 ADQPAPGYGAPQPGYGAPQQPAYGAPQ-PGYGAPQPAYGAPQPAYGQPAYDAQSPYGAPQQPAYGAPQPAYGAPQPGFGAP-QPGYAPFGGYGAQYASWGARVGAYLI 125
[Close]
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Match: gi|752875788|ref|XP_011255261.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus] >gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus])

HSP 1 Score: 62.003 bits (149), Expect = 6.989e-7
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 0 
Query:   60 SPQAPSYSAPAAPSYSAPAPSYSAPAPSYSAPAAPSYGAPEPSYSAPSPSYGSPAEPSY 118
            SP +P YS P++  YS  +P+Y+  +PSYS P +P+Y  P P YS  SP+Y SPA P+Y
Sbjct: 1847 SPTSPQYS-PSSTKYSPTSPTYTPTSPSYS-PTSPTYSPPVPGYSPTSPTY-SPASPAY 1902
The following BLAST results are available for this feature:
BLAST of hypothetical protein DAPPUDRAFT_309288 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAG000000007341.431e-4251.27supercontig:LSalAtl2s:LSalAtl2s1118:124831:127769:... [more]
EMLSAG000000059636.591e-1443.68supercontig:LSalAtl2s:LSalAtl2s321:818470:836551:1... [more]
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BLAST of hypothetical protein DAPPUDRAFT_309288 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
gi|133328|sp|P14248.1|RPB1_PLAFD5.651e-845.16RecName: Full=DNA-directed RNA polymerase II subun... [more]
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BLAST of hypothetical protein DAPPUDRAFT_309288 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 22
Match NameE-valueIdentityDescription
gi|750521743|ref|WP_040803612.1|5.725e-739.81RDD family protein [Nocardia concava][more]
gi|752875788|ref|XP_011255261.1|6.989e-749.15PREDICTED: DNA-directed RNA polymerase II subunit ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold87_size395581supercontigscaffold87_size395581:56069..60595 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold87_size395581-processed-gene-0.7-mRNA-1snap_masked-scaffold87_size395581-processed-gene-0.7-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold87_size395581:56069..60595+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold87_size395581-processed-gene-0.7 ID=snap_masked-scaffold87_size395581-processed-gene-0.7|Name=hypothetical protein DAPPUDRAFT_309288|organism=Tigriopus kingsejongensis|type=gene|length=4527bp|location=Sequence derived from alignment at scaffold87_size395581:56069..60595+ (Tigriopus kingsejongensis)
ATGCTCTCCAAGCTAGTTTGTGCCGCTGCCCTTGCCAGTGGGGCAGTTGT
TCAGGGACACTCAATCCAAGCCAGAGATACTCATGGCTACAACAGCGTGA
ATCGAGATGGGGCGGGACACAGCCATGGATCACAACAGGCTGCACCCGCA
TCCTCGTCCGCTGGTGGTAGCTATGGGTCTCCTCAAGCTCCTTCCTATAG
CGCCCCTGCTGCCCCATCCTACAGCGCTCCTGCCCCATCCTACAGCGCTC
CAGCCCCATCCTACAGTGCACCTGCCGCCCCCTCGTATGGGGCTCCTGAG
CCCTCGTATAGCGCCCCTTCCCCATCCTACGGCTCCCCCGCAGAGCCGTC
TTACCATGCCACAGGCTACGGTGACGAACCATCAGGTGGTGGATTCGACC
TGACGGCTCTGATCATCCCCCTCTTGGCCTTGATCGGCTTGTCCCTGCTA
TTCCCCACTTTCGTGTCCCTGACCACTGTGCGCAAACGTCGAGCCGTCGA
TGAAGGCGAAGGTGAGTGCGGTCTGACACCTCTCTCTAAACACAATTTCT
CCTCTTTTACAGCAACAGCAACTCGCACAATCCTTGCACATCACGCACCC
CATAAACACAATCTAAACACGGCACATTTCACATAATACAAAATGTACAG
CAAACTCGTTGTCGGACTAGCCATGGCTGGCGCTGCTTCTGCCGCAGAAA
TTGTCCGTAGAGACACTGGTGGCGGAGGAGGTCACGCTCATGGTGGTGGC
GGCGGCGGCGGTGGTGGTCATGACCACAGCCACGCTCATGCTGCTCCTGC
TGCTGCTGCACCCTCCTCCGGCTACTCTGAGCCCGCCAGCGGCTACTCTG
CCCCCTCCTCCGGCTATTCCCAACCCTCAACTGGATATGCCCAACCCTCC
TCAGGATATGCCCAACCCTCCTCAGGATATGCTCAGCCTTCGGGTTATGG
CGGCGGCTATGATGTCGGTTACGAGGAAGAAGGTGGCGGTGGTGGCAAGT
TTGACATCTCTGCCCTCATCATTCCTCTCCTGATTGTCTTCGGACTCTCG
CTCCTTTTCCCCACCATCACCTCAGTTGCTGTTGGCGCTACTGGGCGCCG
AAAGAGAGATCTCGAGGGTGGTATGTACAGACATTACACACACGCAATAT
GTTCCGGAGTTAGTCAGATGGAGTACTTCATTTACTGAAATGGCGCATTT
GGCTGTTGTAAATTGAGATAAGTAACTCCATTTCGCTCATCCGGTAATTA
ACACGAACACGTGGCACAATCACCAAGTCTTTCGAAATCAACCACATCAT
CATTGTAGAGAAATAACAAAATTTGGTTCGTACATTGGGGTCAAGGTTGC
AGGAGTATACAAGTCGTGACGACATTCGTGAATGACCTCGTAGAGGCAAA
GTCATTCCATGACCACCTTCAAGGTGCCCATTATCCCTTAAAAGGGTGCT
AACTGCCGCGACTTAAACCGGTCTTTACCACACTACATAGATACTCTTGC
AATTTTGATATATCCATCGGGTTACGGGTATTTCAGTCAATTCGTTTTCA
GATGAGGGTTTTGAGCTGATTTTTTGAGTTGAGAACCATTTTAGTGTAAT
GCTATTCAATTCTTCAGTTCAGGACCTTCAGTTAAACGCTTGAATTCCAC
TTTTTTAATGCACCATGTTGACTTGAGTTTAAAAGTTCTCCTCTCCACCT
CTAGCCAATCCCATGAGCGATGTTGCTGAGCGCGTCAATGCTATTTACAT
GGCCGTTGTTGAAAGTGAAGAGTGCCTGGAGCGAGTTGCCTGCGAGATCG
GAGGTCTTGCTACCGATGTTGGACTTAAGGATAATGCCCTCACCAAGTGA
GTACAAAGCTTTATTCGTATCGTAATACATAGAACAGCAGCTCGTAATAT
TTATTGAACGAGAAATTTCATAATGACAACCAAAAATGCCAAATGTATCC
ACTATGTGATCATCTTACCAACATGTGCAAGTCTCCTTTACTATTTTTCT
GACCATGAACGAAGATATTACTTTACTGCTGGTCTAGTGGTGTAATAGCC
CGACAGCACATCATATTTGACCCTCCTCCCACGTTTATCATTCCAGGATG
ACCGATCCCTTCGTCCCCTTGAAGTACAAGAAGTACATGACTCAATTCAA
GACCGGACAGAACTGTCACAAATTGAAGTGTGGCCAGCTCTTCTAAGTGA
ACTCCCTTAGAAGAACAATCGCAAACAAACTTAGACCATCAAGACTTATG
TCACTCGCCCTTGGAAGGAGGGACCAGCTGCCGGAATGAACTGCTCCCAG
TGCATACTCTCCTTGTGAATCATAAGTAGTGCATCAAGAACACGCCATTT
CTCCGGTCTCGATTCAACCTCTGCGGGCGTGGTGCCAGAATTAAATTAGA
AAGAAACAACATCGAATTCTACCCAAACAACATTCGAGTACCTATCCGCT
TCAACCAACTACTCTGGGAGTCCAGCACGTCTGAGGAGATCTCTGTCCTA
GTATCAGACGCGAGGATCACCATTATATCATTTTGGCCCGGATGTGCTTG
TTGGCCTCGTACGCACCAGAGTCGCTATATGCGAGGATGGAACAGAGTCC
TTCAGCACCCAGGCCTGAACCCTCCCACCTCTTCGCAATGTGATTTTGGT
CCTATGTGGGACTGAGCCACTTCAAAGTATGTGAAATTCACACACAACCA
CTACTGCCCTCCTAACTACTTCTACTTTCTGGGGTTATTCTGATTTTACT
ACCAACTACTACTATTATCTTCTGAATGGACAAGGAATACAAATAAATCA
TCTGTCCCACAACCTCTCGTCTGTCTGTCGGTGACGGTGTGGATGTCTCC
TGCAATCTTCAGAGTGCATTGTGAATCGGCTTGGCCGGAACTTGATTCGT
CTACCAACCAGACCTGCATCACCATCACCTGCGCCAATCAAAGTCCGGAC
AAGCCCCAGTGTCTAAGATCAATGTCTCTATCATTGCCGGTGGTCAGAGC
ACCACGCTCTTCCTTCTACACTACAACTTCGGCTACTCCAAGCCTGTCAT
TCCGGAGGCGACCATCGAGGTGATCGTCGTCGTCTCCCAACTCTTCTCAA
CAACTATATTATCAAGTCAAACTGTGCTCCTCTGCAAGAAGGTCTCCGCC
TACCACCACCGAACAACCTGAAATCAACCACCCGACAATGTCTTGCTTTG
CCAGCAGTCAGCAATTTCAGAACAGCCGTCCCACTGGCCCTTTGGATGTG
GCCTCGGCGGCTGTTGTTTCTCCATTGACAAAGAGTACGAAATAAACCTT
TAGGGACCATCTCAGAGGACTTTCCATTCTTATCACACATTAGCTCTGAC
CTAAGCGTCATGAGGCAAAAAGCATCACACACCACCAACACCTCTGATGA
TAATGATGATCAAGTCACCATTCAAACCACCATCATCATCGTAAAACTAC
TGGATACTAGTCGGATGAAATCTCCTGGAAGCAAACAATTGGACAACTTC
TTGAAATGACAACCCAGCTGCTGCTGAACAACAATAACAACCCTAACCAC
ATCAGGGGCCGACACTTATCGGCAATGCTTCTCTCTCTCACACATCTGTT
TTATTGACAAGAGGCGTGGCATCAGATCGGCTGTGACTGCGGCAGTGGCG
GACACCCCTTTCCGTGTTCTCAAAATCGAATGTGATGAAGACAACTTTCG
TTCTTGACTCCACAGTGGACAAAGATTTGCCTCAACCATTGCAATCATTT
TCCGAACATCCAAAGGCCTTCCTGGTTAGCACAACGAAAAAAACACCAGA
GGGTGAGAACAACTTTCCATCACCTTCTCCGCCCTCCTTCCTTCAGGGAA
AATATCGTTCACCCGTTCCAGGGTGGGCGGACTACCAACCTCTCTCTACC
TTTGCAATTGAAGAAACCCCTTTATTCTCCTCCATCCAGTTCTTCTTGGA
CCACCTCAAATGCCCCAAACTGAACACATCGATGATGAAGAAGGACTGCA
TCTTCCCCAAGCTGCCGAGGCGACCTCTACGGCTGGAAGAACCGGAAAAC
GAAGTTTGCTCAAAATCCAAAAAAGTTCGGATCTTCTTGCCCATCGGGGC
CACTCGTCACAAAAGGGTTGCTAGTCGTCCTCCGTGGTTTGAATGACTCC
CCTGGAATCCACATCCAACAAGAGCCCTTCACTCCACCACAAGTTTCAGT
GTCCATCAAATTCAAGAAGAGAGTCAAATAACATCTTATTCTAATTATGT
TATCCAGGGATTTTATTGATATCATAGCTCATCCACTCACACAACAAAAA
CCTAGACCACTAAGATGTTTTCGTGATCAAGTAGATGGCCAACATCAACG
ACTCGGTTAGTCAATTCATGATTGTGTGGGTCGTCAGCAAAGGAGTTGAT
GTGTCTGCTTTTTCTCTGAACCTTTGTACAGATGCAAATGTGTACTCTTA
AAATTATTCTAGTTGTGTCATAGGAGAAACGTTTTATATACTTTTATATA
TATATTTGCTTATATATAATAATAAAT
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Synonyms
The feature 'hypothetical protein DAPPUDRAFT_309288' has the following synonyms
Synonym
Tk12231
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