holliday junction dna helicase, snap_masked-scaffold9686_size2354-processed-gene-0.1 (gene) Tigriopus kingsejongensis

Overview
Nameholliday junction dna helicase
Unique Namesnap_masked-scaffold9686_size2354-processed-gene-0.1
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|122972806|sp|Q168A3.1|RUVA_ROSDO (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA)

HSP 1 Score: 267.314 bits (682), Expect = 5.809e-88
Identity = 147/209 (70.33%), Postives = 170/209 (81.34%), Query Frame = 0
Query:  164 ADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETVPVAAPATP-PSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371
            +DHVLIDVRGVGY+V+ S+RTLA LPG GE V+LYTDLLVRED++QLFGF +L EKEWHRLL S+ G+GAKAS+AILGTLG++GVSRAIALGDWNA+KAA GVGPKIAQRVV +LKDKAP VM +SDT A  A      D VIET    +P    PSA   +EALSAL NLGYAPGDAA AVAQA+G+ P+A T DLIR+AL+ LAPKG
Sbjct:   14 SDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQLFGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKIAQRVVLDLKDKAPSVMGMSDTQATVAAQS--SDAVIETRAAPSPVVQNPSAQ--AEALSALSNLGYAPGDAAAAVAQAAGELPDAETPDLIRAALKRLAPKG 218          
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|254767384|sp|B9KKV6.1|RUVA_RHOSK (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA)

HSP 1 Score: 242.662 bits (618), Expect = 3.182e-78
Identity = 134/210 (63.81%), Postives = 164/210 (78.10%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETV----PVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370
            DHVLIDVRGVGY+VYVSDRTLA +PG GEAV+LYT+L+VREDLLQLFGF +++EKEWHRLLM++ G+GAKA MAILG LG+EG +RAI LGD  +I+AAPG+GPKIAQRVV ELK KAP +MA+   +A  A  + P+ +   +        AP  PP     ++ALSAL NLGY P DAA AVAQA+G+SP+A TA LIR+AL+LLAPK
Sbjct:   15 DHVLIDVRGVGYIVYVSDRTLASMPGLGEAVALYTELVVREDLLQLFGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKIAQRVVLELKSKAPALMAMGGGTAALAPSEPPEPQPGTSSGSRRKTRAP-EPPRPSHTADALSALANLGYQPTDAAQAVAQAAGESPDADTAALIRAALKLLAPK 223          
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|90135713|sp|Q3J0F6.1|RUVA_RHOS4 (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA >gi|166200251|sp|A3PLU4.1|RUVA_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA)

HSP 1 Score: 237.269 bits (604), Expect = 5.492e-76
Identity = 136/221 (61.54%), Postives = 167/221 (75.57%), Query Frame = 0
Query:  154 VQIKGPDAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETV----PVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370
            +  +GPD     HVLIDVRGVGY+VYVSDRTLA +PG GE V+LYT+L+VREDLLQLFGF +++EKEWHRLLM++ G+GAKA MAILG LG+EG +RAI LGD  +I+AAPG+GPKIAQRVV ELK KAP +MA+   +A  A  + P+ E   +        AP  PP     ++ALSAL NLGY P DAA AVAQA+G+SP+A TA LIR+AL+LLAPK
Sbjct:    9 LDFRGPD-----HVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQLFGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKIAQRVVLELKSKAPALMAMGGGTAALAPSEPPEPEPGTSSGSRRKTRAP-EPPRPSHTADALSALANLGYQPTDAAQAVAQAAGESPDADTAALIRAALKLLAPK 223          
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|166200252|sp|A4WRW8.1|RUVA_RHOS5 (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA)

HSP 1 Score: 237.269 bits (604), Expect = 5.552e-76
Identity = 120/192 (62.50%), Postives = 149/192 (77.60%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAI---SDTSAPSAMVDLPQDEVIETVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPE 353
            DHVLIDVRGVGY+V+VSDRTLA +P  GE V+LYT+L+VREDLLQLFGF +++EKEWHRLLM++ G+GAKA MAILG LG+EGV+RAI+LGD  +I+AAPGVGPKIAQRVV ELK KAP +M +   +   A + + + P++      P    A PP+A    +ALSAL NLGY P DAA AVAQASGD+P+
Sbjct:   15 DHVLIDVRGVGYIVHVSDRTLAAMPAPGEGVALYTELVVREDLLQLFGFTTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGVARAISLGDARSIQAAPGVGPKIAQRVVLELKSKAPALMVMGGAAPARAAAVVEETPEEPAPRRKPSTRAAPPPAANHTGDALSALTNLGYQPSDAAQAVAQASGDNPQ 206          
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|81349137|sp|Q5LNT7.1|RUVA_RUEPO (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA)

HSP 1 Score: 228.409 bits (581), Expect = 1.630e-72
Identity = 135/214 (63.08%), Postives = 159/214 (74.30%), Query Frame = 0
Query:  160 DAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIE---TVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370
            D    DHVLIDVRGVGY+VY SDRTLA LPG GE V+LYTD++VREDL+QLFGF SL EKEWHRLL S+ G+GAK S+AILG LG +GVSRAIALGDW ++K+A GVGPK AQR+V +LKDKAP VMA+  T A +    +   EVIE     P  A     +  + + ALSAL NLGY P DAA AVAQA+ ++PEA   DLIR+ALRLLAPK
Sbjct:   10 DYRSTDHVLIDVRGVGYIVYCSDRTLAALPGVGEVVALYTDMVVREDLMQLFGFMSLAEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWASVKSAKGVGPKTAQRIVLDLKDKAPGVMAMGGTVAQAMEGAVEVVEVIEPAAPAPRKAAPPGGAGAATAGALSALSNLGYGPSDAAAAVAQAAAEAPEAGETDLIRAALRLLAPK 223          
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|189045752|sp|A8LHP9.1|RUVA_DINSH (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA)

HSP 1 Score: 228.024 bits (580), Expect = 2.281e-72
Identity = 128/211 (60.66%), Postives = 160/211 (75.83%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDT--SAPSAMVD--LPQDEVIETVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371
            DH+++DVRGVGY+V  S+RTLAG+P  G  V+L+T+LLVREDLLQL+GF +L+EKEWHRLL S+ G+GAKASM+IL TLG +GV RAIALGDW A++ A GVGPKIAQRVVNELKDK P+VMA+  T  +A   +++  +   E IE    A PA P +A   + ALSAL NLGY  G+AA AVA A+G+     T D+IR+ALRLLAPKG
Sbjct:   15 DHIVLDVRGVGYVVQCSERTLAGMPAPGGPVALFTELLVREDLLQLYGFPTLLEKEWHRLLTSVQGVGAKASMSILSTLGVDGVGRAIALGDWGALRKAQGVGPKIAQRVVNELKDKGPEVMAMGGTLEAALDGVIEDGMAASEGIEPPSAARPAVPSAASDQAGALSALVNLGYGQGEAASAVATAAGEGAVGET-DIIRAALRLLAPKG 224          
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|123094354|sp|Q28TT0.1|RUVA_JANSC (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA)

HSP 1 Score: 223.787 bits (569), Expect = 9.447e-71
Identity = 135/215 (62.79%), Postives = 157/215 (73.02%), Query Frame = 0
Query:  160 DAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDT---SAPSAMVDLP-QDEVIETVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370
            D   +DH LIDV GVGY+V+ SDRTLA LP  GE V+LYTDLLVREDLLQLFGF S  EKEWHRLL S+ G+GAKASMAILGTLG EG +RAI LGD  AIKAAPGVGPK+AQRVV ELKDKAP VMA+  T   +    + D+P +       P       P++ + +EALSALQNLGY P DAA AVAQA+     ++T +LIR+ALRLLAPK
Sbjct:   10 DYKGSDHALIDVGGVGYVVHCSDRTLAALPARGEVVALYTDLLVREDLLQLFGFLSPYEKEWHRLLTSVQGVGAKASMAILGTLGVEGAARAITLGDATAIKAAPGVGPKLAQRVVMELKDKAPAVMAMGGTLDDAMDDVVDDMPGESAAPAPAPQPRAPKRPASNAQAEALSALQNLGYGPSDAAQAVAQAA--ESASNTPELIRAALRLLAPK 222          
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|166230580|sp|A1AZW3.1|RUVA_PARDP (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA)

HSP 1 Score: 222.246 bits (565), Expect = 3.174e-70
Identity = 136/212 (64.15%), Postives = 167/212 (78.77%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVD---LPQDEVIE---TVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370
            DHVLIDVRGVGY+V+VS+RT A LP  G+A +LYT+LLVREDLLQLFGF +L+EKEWHRLL S+ G+GAK ++AILGTLG +G+SRA+ALGDW+A++ APGVGPK+AQRVV ELKDKAP VMA+      +  VD   LP+ E++E     PV A A P SA + ++ALSAL NLGYAP +AA AVA+A+   P A TA LIR+ALRLLAPK
Sbjct:   15 DHVLIDVRGVGYIVHVSERTAANLPPAGQATALYTELLVREDLLQLFGFPTLLEKEWHRLLTSVQGVGAKVALAILGTLGPDGLSRALALGDWSALRKAPGVGPKLAQRVVMELKDKAPAVMALGG----ALTVDPGPLPEVELVEAAVPAPVPAKAAPSSAQATADALSALGNLGYAPSEAASAVAEAAAREPAAPTAALIRAALRLLAPK 222          
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|110282925|sp|Q3J0F5.1|RUVC_RHOS4 (RecName: Full=Crossover junction endodeoxyribonuclease RuvC; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC >gi|254767483|sp|B9KKV7.1|RUVC_RHOSK RecName: Full=Crossover junction endodeoxyribonuclease RuvC; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC)

HSP 1 Score: 220.32 bits (560), Expect = 3.238e-70
Identity = 105/142 (73.94%), Postives = 117/142 (82.39%), Query Frame = 0
Query:   23 MRVIGIDPGLRNTGWGVIDVDGPRLAHVGNGVCCSDGDDLSERLLSLFNQLSEVIDAFSPTTAAVEKTFVNKDGAGTLKLGQARGIALLVPAKAGLEIGEYSPNTVKKTVVGVGHAQKGQVLHMVQLQLPGVQIKGPDAADA 164
            MRV+GIDPGLRN GWGVIDV G RLAHV NG+C SD  DL+ RLLSL  QL++V+  F P TAAVE TFVNKDG  TLKLGQARGIALLVPA+AGL +GEY+PN VKKTVVGVGHA K Q+ HMV+L LPGV + GPDAADA
Sbjct:    1 MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSGDLAHRLLSLHGQLTDVLARFQPDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKEQIQHMVRLHLPGVHLAGPDAADA 142          
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|166233290|sp|A3PLU5.1|RUVC_RHOS1 (RecName: Full=Crossover junction endodeoxyribonuclease RuvC; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC)

HSP 1 Score: 219.55 bits (558), Expect = 7.065e-70
Identity = 105/142 (73.94%), Postives = 118/142 (83.10%), Query Frame = 0
Query:   23 MRVIGIDPGLRNTGWGVIDVDGPRLAHVGNGVCCSDGDDLSERLLSLFNQLSEVIDAFSPTTAAVEKTFVNKDGAGTLKLGQARGIALLVPAKAGLEIGEYSPNTVKKTVVGVGHAQKGQVLHMVQLQLPGVQIKGPDAADA 164
            MRV+GIDPGLRN GWGVIDV G RLAHV NG+C SD  DL++RLLSL  QL++V+  F P TAAVE TFVNKDG  TLKLGQARGIALLVPA+AGL +GEY+PN VKKTVVGVGHA K Q+ HMV+L LPGV + GPDAADA
Sbjct:    1 MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSGDLAQRLLSLHGQLTDVLARFQPDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKEQIQHMVRLHLPGVALAGPDAADA 142          
BLAST of holliday junction dna helicase vs. nr
Match: gi|1134294225|ref|WP_076534521.1| (Holliday junction branch migration protein RuvA [Roseovarius nanhaiticus] >gi|1094454050|emb|SEL11874.1| Holliday junction DNA helicase subunit RuvA [Roseovarius nanhaiticus] >gi|1131818939|emb|SIS20197.1| Holliday junction DNA helicase subunit RuvA [Roseovarius nanhaiticus])

HSP 1 Score: 283.493 bits (724), Expect = 9.471e-92
Identity = 142/212 (66.98%), Postives = 172/212 (81.13%), Query Frame = 0
Query:  160 DAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371
            D   ADHVLIDVRGVGY+V+ SDRT+  LP  GE  +LYTDLLVRED+LQLFGF +LVEKEWHRLLMS+ G+GAKAS+AILGTLG  G+ RAIALGDWN++KAA G+GPK AQRVVNELKDKAP++MA+    AP+ ++   +D+VIE +P A        G  +EALSAL NLGYAPG+A+GAVAQA+GD P+A+ ADLIR+AL+LLAPKG
Sbjct:   10 DYRAADHVLIDVRGVGYLVFCSDRTMQALPRAGEHAALYTDLLVREDILQLFGFTTLVEKEWHRLLMSVQGVGAKASLAILGTLGPNGIGRAIALGDWNSVKAAKGIGPKTAQRVVNELKDKAPEIMAMGAAPAPAPVLPSGEDDVIEAIPAAPAPVSAGPGPQAEALSALTNLGYAPGEASGAVAQAAGDIPDANVADLIRAALKLLAPKG 221          
BLAST of holliday junction dna helicase vs. nr
Match: gi|1223391228|ref|WP_091429297.1| (Holliday junction branch migration protein RuvA [Aliiroseovarius sediminilitoris] >gi|1094360536|emb|SEW08950.1| Holliday junction DNA helicase subunit RuvA [Aliiroseovarius sediminilitoris])

HSP 1 Score: 280.411 bits (716), Expect = 1.839e-90
Identity = 147/211 (69.67%), Postives = 170/211 (80.57%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIE----TVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371
            DHVLIDVRGVGY+VYVSDRT+A LPG GEAV+LYT+LLVRED LQLFGF +LVEKEWHRLLMS+ GIGAKASMAILGTLG +GVSRAIALGDWNA+KAA G+GPK AQRVV ELKDKA  VMA+S  ++ +    +  D VIE    + PV AP +  +A + SEALSAL NLGYAPG+AA AVAQA G+     T+ LIR+AL+LLAPKG
Sbjct:   15 DHVLIDVRGVGYLVYVSDRTMASLPGPGEAVALYTELLVREDNLQLFGFTTLVEKEWHRLLMSVQGIGAKASMAILGTLGPDGVSRAIALGDWNAVKAAKGIGPKTAQRVVLELKDKAASVMALSGQASVATGSFVQDDAVIEPSTPSAPVTAPVSTGNAAAQSEALSALTNLGYAPGEAASAVAQALGEDTTLDTSGLIRAALKLLAPKG 225          
BLAST of holliday junction dna helicase vs. nr
Match: gi|1189759653|ref|WP_085804215.1| (Holliday junction branch migration protein RuvA [Roseovarius albus] >gi|1188019247|emb|SLN19683.1| Holliday junction ATP-dependent DNA helicase RuvA [Roseovarius albus])

HSP 1 Score: 279.256 bits (713), Expect = 5.957e-90
Identity = 149/213 (69.95%), Postives = 176/213 (82.63%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAI----SDTSAPSAMVDLPQDEVIET--VPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371
            DHVLIDVRGVGY+VY S+RTL  LP  GE V+LYTDLLVRED+LQLFGF +LVEKEWHRLLMS+ G+GAKA++AI+GTLG + VSRAIALGDWNA+KAA G+GPK AQRVVNELKDKAP+VMA+    S T+AP A  D+P DEVIET   P  APA   +AG+ +EALSAL NLGYAPG+AA AV Q +GD+P+A T+D+IR AL+ LAPKG
Sbjct:   15 DHVLIDVRGVGYLVYCSERTLQALPRVGEHVALYTDLLVREDILQLFGFTTLVEKEWHRLLMSVQGVGAKAALAIMGTLGPDAVSRAIALGDWNAVKAAKGIGPKTAQRVVNELKDKAPEVMAMGASPSATTAPVA--DVPVDEVIETPMAPPKAPAVQENAGAQAEALSALTNLGYAPGEAAAAVVQVAGDNPDAGTSDMIRLALKSLAPKG 225          
BLAST of holliday junction dna helicase vs. nr
Match: gi|518798833|ref|WP_019954787.1| (Holliday junction branch migration protein RuvA [Loktanella vestfoldensis])

HSP 1 Score: 277.715 bits (709), Expect = 1.977e-89
Identity = 145/209 (69.38%), Postives = 170/209 (81.34%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETVPVAAP-ATP-PSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371
            DHVLIDVRGVGY+VYVSDR +AGLP  GEAV+LYTDLLVREDL+QLFGF +LVEKEWHRLLMS+ GIGAKAS+AILG LG++GVSRAIALGDWNA+  A GVGPK AQRV+ ELKDKAP VMA+      + +     D+VIE  P AAP ATP P++ + ++A+SAL NLGYAPGDAA AVAQA G  P+A  + LIR+AL+LLAPKG
Sbjct:   15 DHVLIDVRGVGYLVYVSDRVMAGLPRNGEAVALYTDLLVREDLMQLFGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDWNAVAKAKGVGPKTAQRVIIELKDKAPGVMALG-----AGLTAATGDDVIEADPAAAPRATPQPASTAQADAMSALANLGYAPGDAASAVAQALGADPQADASALIRAALKLLAPKG 218          
BLAST of holliday junction dna helicase vs. nr
Match: gi|1120025675|ref|WP_072900042.1| (Holliday junction branch migration protein RuvA [Loktanella sediminum] >gi|1109849483|emb|SHG87619.1| Holliday junction DNA helicase subunit RuvA [Loktanella sediminum])

HSP 1 Score: 276.944 bits (707), Expect = 3.515e-89
Identity = 144/208 (69.23%), Postives = 169/208 (81.25%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETV-PVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371
            DHVLIDVRGVGY+VYVS+R +A LP  GEAV+LYTDLLVRED LQLFGF +LVEKEWHRLLMS+ GIGAKASMAILGT+G++GVSRAIALGDWNAI  A GVGPK AQRV  ELKDKAP VMA+  T A ++      DEV+E + PVAAP  P +  + +EALSAL NLGYAPG+AA AVA++ G  P+A T+ LIR++L+LLAPKG
Sbjct:   15 DHVLIDVRGVGYLVYVSNRVMASLPSNGEAVALYTDLLVREDNLQLFGFTTLVEKEWHRLLMSVQGIGAKASMAILGTIGADGVSRAIALGDWNAIAKAKGVGPKTAQRVAIELKDKAPGVMAMGGTVAQAS-----GDEVVEVIEPVAAPTAPMANPAQAEALSALGNLGYAPGEAASAVAESVGADPDADTSTLIRASLKLLAPKG 217          
BLAST of holliday junction dna helicase vs. nr
Match: gi|1124354984|ref|WP_074645526.1| (Holliday junction branch migration protein RuvA [Celeribacter baekdonensis] >gi|1086690331|emb|SDF75594.1| Holliday junction DNA helicase subunit RuvA [Celeribacter baekdonensis])

HSP 1 Score: 276.174 bits (705), Expect = 9.078e-89
Identity = 144/220 (65.45%), Postives = 175/220 (79.55%), Query Frame = 0
Query:  160 DAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQ-DEVIETVPVA-------APATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371
            D    DHV+IDVRGVGY+V++++RT   LPG G  VSLYTD+LVREDL+QLFGF+SL+EKEW+RLL+S+ GIG+KA+MA+LGTLG E   RAIALGDWNA+KAAPGVGPKIAQRVVNELKDKAP VMA+  T A S + + PQ DEVIET   A       AP   P+A S +EA+SALQNLGY+P DA  AVAQ++ D+P+A T+ LIR+AL+LLAPKG
Sbjct:   10 DYIGTDHVMIDVRGVGYIVHINERTRMSLPGRGAPVSLYTDMLVREDLMQLFGFSSLLEKEWYRLLISVQGIGSKAAMAVLGTLGPEATGRAIALGDWNAVKAAPGVGPKIAQRVVNELKDKAPAVMAMGGTLAKS-LAEAPQVDEVIETDAPAPKPRVANAPVPKPNASSEAEAMSALQNLGYSPSDAVQAVAQSAQDAPDADTSTLIRAALKLLAPKG 228          
BLAST of holliday junction dna helicase vs. nr
Match: gi|1221756939|ref|WP_089881744.1| (Holliday junction branch migration protein RuvA [Citreimonas salinaria] >gi|1088986601|emb|SDY21776.1| Holliday junction DNA helicase subunit RuvA [Citreimonas salinaria])

HSP 1 Score: 275.404 bits (703), Expect = 1.548e-88
Identity = 144/210 (68.57%), Postives = 168/210 (80.00%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETVPVAAPATPPSAGSV----SEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370
            DHVLIDVRGVGY+VY SDRTLA LP  GEA +L+TDLLVREDLLQLFGF +LVEKEWHRLLM + G+GAKAS+AILGTLG++GVSRAIALGDWNA+KAA G+GPK AQRVVNEL+DKAP VMA+ + +     V  P   VI+  P AA +TPP A       +EALSAL NLGYAP +AA AVA+A  ++P+A TA LIR+ALRLLAPK
Sbjct:   15 DHVLIDVRGVGYVVYCSDRTLAALPRAGEAAALWTDLLVREDLLQLFGFPTLVEKEWHRLLMGVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGIGPKTAQRVVNELRDKAPTVMAMGEQA-----VSAPDASVIDDAPGAAASTPPPARPAPSGRAEALSALSNLGYAPSEAARAVAEALDEAPDADTATLIRAALRLLAPK 219          
BLAST of holliday junction dna helicase vs. nr
Match: gi|1213277214|ref|WP_088663573.1| (MULTISPECIES: Holliday junction branch migration protein RuvA [Rhodobacteraceae] >gi|1212231924|gb|OWU68852.1| ATP-dependent DNA helicase RuvA [Roseovarius sp. 22II1-1F6A] >gi|1253262507|gb|ATI42777.1| Holliday junction branch migration protein RuvA [Celeribacter manganoxidans])

HSP 1 Score: 273.092 bits (697), Expect = 1.676e-87
Identity = 155/219 (70.78%), Postives = 179/219 (81.74%), Query Frame = 0
Query:  160 DAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLP--QDEVIETVPVAAPATP---PSAGSVSE--ALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371
            D   +DHVLIDVRGVGY+VYVS+RT+  LPG  EAV+LYTDL+VREDLLQL+GF +L+EKEWHRLL+S+ GIGAKAS+AILGTLG EGVSRAIALGDWNA+KAAPGVGPKIAQRVVNELKDKAP VMA++ T   +A   LP    +VIET       TP   PS G+V++  ALSAL NLGYAPG+AAGAVAQA+ D+PEA   DLIR+ALRLLAPKG
Sbjct:   10 DYRASDHVLIDVRGVGYLVYVSERTMMALPGPNEAVALYTDLVVREDLLQLYGFPTLLEKEWHRLLVSVQGIGAKASLAILGTLGPEGVSRAIALGDWNAVKAAPGVGPKIAQRVVNELKDKAPGVMALAATMNRTAGDTLPDIDTDVIETPAPPRRGTPSPAPSGGAVAQADALSALSNLGYAPGEAAGAVAQAASDAPEAEAPDLIRAALRLLAPKG 228          
BLAST of holliday junction dna helicase vs. nr
Match: gi|1124253569|ref|WP_074552370.1| (Holliday junction branch migration protein RuvA [Rhodobacter capsulatus] >gi|1086524328|emb|SDE29690.1| Holliday junction DNA helicase subunit RuvA [Rhodobacter capsulatus])

HSP 1 Score: 272.322 bits (695), Expect = 2.837e-87
Identity = 150/212 (70.75%), Postives = 168/212 (79.25%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDL-PQDEVIETVP----VAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEAS-TADLIRSALRLLAPK 370
            DHVLIDVRGVGY+V+VS RT A LP  GEA +LYT+LLVREDLLQLFGF +L+EKEWHRLL S+ GIGAKAS+AILGTLG EGVSRA+ALGDWNAIKAAPGVGPK+AQRVV ELKDKAP VMA+  T      VD  P DEVIET P      APA        +EALSAL NLGY+P DAA AVA+AS ++PEA+ TA LIR+ALRLLAPK
Sbjct:   15 DHVLIDVRGVGYIVHVSSRTAANLPPVGEACALYTELLVREDLLQLFGFPTLIEKEWHRLLTSVQGIGAKASLAILGTLGPEGVSRALALGDWNAIKAAPGVGPKLAQRVVMELKDKAPTVMAMGGT----LTVDTAPSDEVIETAPQPVKRPAPAATRQVNFTAEALSALTNLGYSPSDAATAVARAS-ENPEATDTAKLIRTALRLLAPK 221          
BLAST of holliday junction dna helicase vs. nr
Match: gi|1199467250|ref|WP_087206279.1| (Holliday junction branch migration protein RuvA [Loktanella vestfoldensis] >gi|1198347249|gb|ART99990.1| Holliday junction ATP-dependent DNA helicase RuvA [Loktanella vestfoldensis])

HSP 1 Score: 271.166 bits (692), Expect = 5.918e-87
Identity = 145/211 (68.72%), Postives = 169/211 (80.09%), Query Frame = 0
Query:  165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAI--SDTSAPSAMVDLPQDEVIETVPVAAP-ATP-PSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371
            DHVLIDVRGVGY+VYVS+R +A LP  GEAV+LYTDLLVREDL+QLFGF +LVEKEWHRLLMS+ GIGAKAS+AILG LG++GVSRAIALGDWNA+  A GVGPK AQRV+ ELKDKAP +MA+  S T+A         DEVIE  P  AP ATP P++ + ++A+SAL NLGYAPGDAA AVAQA G  P+A    LIR+AL+LLAPKG
Sbjct:   15 DHVLIDVRGVGYLVYVSERVMASLPRNGEAVALYTDLLVREDLMQLFGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDWNAVAKAKGVGPKTAQRVIIELKDKAPGIMALGGSVTAATG-------DEVIEADPAPAPRATPQPASTAQADAMSALANLGYAPGDAASAVAQALGADPQADAGALIRAALKLLAPKG 218          
The following BLAST results are available for this feature:
BLAST of holliday junction dna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of holliday junction dna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|122972806|sp|Q168A3.1|RUVA_ROSDO5.809e-8870.33RecName: Full=Holliday junction ATP-dependent DNA ... [more]
gi|254767384|sp|B9KKV6.1|RUVA_RHOSK3.182e-7863.81RecName: Full=Holliday junction ATP-dependent DNA ... [more]
gi|90135713|sp|Q3J0F6.1|RUVA_RHOS45.492e-7661.54RecName: Full=Holliday junction ATP-dependent DNA ... [more]
gi|166200252|sp|A4WRW8.1|RUVA_RHOS55.552e-7662.50RecName: Full=Holliday junction ATP-dependent DNA ... [more]
gi|81349137|sp|Q5LNT7.1|RUVA_RUEPO1.630e-7263.08RecName: Full=Holliday junction ATP-dependent DNA ... [more]
gi|189045752|sp|A8LHP9.1|RUVA_DINSH2.281e-7260.66RecName: Full=Holliday junction ATP-dependent DNA ... [more]
gi|123094354|sp|Q28TT0.1|RUVA_JANSC9.447e-7162.79RecName: Full=Holliday junction ATP-dependent DNA ... [more]
gi|166230580|sp|A1AZW3.1|RUVA_PARDP3.174e-7064.15RecName: Full=Holliday junction ATP-dependent DNA ... [more]
gi|110282925|sp|Q3J0F5.1|RUVC_RHOS43.238e-7073.94RecName: Full=Crossover junction endodeoxyribonucl... [more]
gi|166233290|sp|A3PLU5.1|RUVC_RHOS17.065e-7073.94RecName: Full=Crossover junction endodeoxyribonucl... [more]

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BLAST of holliday junction dna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1134294225|ref|WP_076534521.1|9.471e-9266.98Holliday junction branch migration protein RuvA [R... [more]
gi|1223391228|ref|WP_091429297.1|1.839e-9069.67Holliday junction branch migration protein RuvA [A... [more]
gi|1189759653|ref|WP_085804215.1|5.957e-9069.95Holliday junction branch migration protein RuvA [R... [more]
gi|518798833|ref|WP_019954787.1|1.977e-8969.38Holliday junction branch migration protein RuvA [L... [more]
gi|1120025675|ref|WP_072900042.1|3.515e-8969.23Holliday junction branch migration protein RuvA [L... [more]
gi|1124354984|ref|WP_074645526.1|9.078e-8965.45Holliday junction branch migration protein RuvA [C... [more]
gi|1221756939|ref|WP_089881744.1|1.548e-8868.57Holliday junction branch migration protein RuvA [C... [more]
gi|1213277214|ref|WP_088663573.1|1.676e-8770.78MULTISPECIES: Holliday junction branch migration p... [more]
gi|1124253569|ref|WP_074552370.1|2.837e-8770.75Holliday junction branch migration protein RuvA [R... [more]
gi|1199467250|ref|WP_087206279.1|5.918e-8768.72Holliday junction branch migration protein RuvA [L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold9686_size2354supercontigscaffold9686_size2354:1043..2277 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold9686_size2354-processed-gene-0.1-mRNA-1snap_masked-scaffold9686_size2354-processed-gene-0.1-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold9686_size2354:1043..2277-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold9686_size2354-processed-gene-0.1 ID=snap_masked-scaffold9686_size2354-processed-gene-0.1|Name=holliday junction dna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1235bp|location=Sequence derived from alignment at scaffold9686_size2354:1043..2277- (Tigriopus kingsejongensis)
ATGTTCTGGCGGATGTTCGCGTTTCGTGCTAATTCGATAAAAAAACAACA AGAGCAGGGCAGTTTCATGCGTGTGATTGGGATCGATCCCGGGTTGCGCA ACACCGGTTGGGGCGTCATCGATGTGGATGGGCCGCGTCTGGCCCATGTG GGCAACGGTGTGTGTTGTTCGGATGGCGATGATCTATCAGAGCGTCTTTT GAGTCTTTTCAACCAATTGTCAGAAGTTATTGATGCGTTCAGCCCCACGA CGGCTGCCGTTGAAAAGACCTTTGTGAACAAGGATGGTGCCGGCACGCTA AAGCTGGGACAGGCGCGCGGCATCGCTTTGCTGGTACCGGCCAAGGCTGG GCTGGAGATTGGCGAATATTCCCCCAACACCGTCAAAAAGACCGTTGTGG GGGTTGGACACGCCCAAAAGGGGCAGGTGTTGCATATGGTGCAGCTGCAA TTGCCCGGGGTTCAGATCAAGGGCCCGGACGCAGCAGATGCGTTGGCAAT TGCGATTTGCCATTCTCATCATGCACAATCGGCCGGGCATCTGAACGCGG CATTGAAAAAGGCGATGGCATGATTGGTAAGCTATCAGGACGGATTGATT ATCGCGGCAGTGATCATGTTTTGATCGATGTGCGCGGTGTGGGGTACATG GTTTACGTGTCCGACCGCACCTTGGCCGGGTTGCCCGGCACCGGAGAGGC GGTGTCGCTTTATACCGATTTGCTGGTGCGTGAGGATTTGCTGCAGCTCT TCGGGTTCAACAGTCTGGTTGAAAAGGAATGGCATCGGTTGTTGATGAGC ATTTCGGGCATCGGGGCAAAGGCCTCTATGGCGATCCTTGGAACCTTGGG GTCGGAAGGGGTGTCGCGGGCGATTGCGCTTGGGGATTGGAACGCCATCA AAGCGGCGCCGGGTGTTGGCCCGAAAATCGCGCAACGCGTGGTGAATGAG CTGAAAGACAAAGCGCCCAAAGTCATGGCCATCAGCGACACGTCCGCCCC TTCTGCGATGGTGGATTTGCCACAGGATGAGGTGATCGAAACGGTGCCGG TTGCGGCCCCCGCCACGCCGCCAAGCGCGGGCTCTGTGTCAGAGGCCCTG TCGGCGCTTCAGAACCTGGGCTATGCACCCGGCGATGCGGCCGGTGCAGT GGCGCAGGCCTCTGGCGACAGCCCAGAGGCGAGCACGGCAGATCTGATCC GGTCTGCGCTGCGTCTGCTGGCCCCGAAAGGATAA
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Synonyms
The feature 'holliday junction dna helicase' has the following synonyms
Synonym
Tk02172
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