holliday junction dna helicase, snap_masked-scaffold9686_size2354-processed-gene-0.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|122972806|sp|Q168A3.1|RUVA_ROSDO (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA) HSP 1 Score: 267.314 bits (682), Expect = 5.809e-88 Identity = 147/209 (70.33%), Postives = 170/209 (81.34%), Query Frame = 0 Query: 164 ADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETVPVAAPATP-PSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371 +DHVLIDVRGVGY+V+ S+RTLA LPG GE V+LYTDLLVRED++QLFGF +L EKEWHRLL S+ G+GAKAS+AILGTLG++GVSRAIALGDWNA+KAA GVGPKIAQRVV +LKDKAP VM +SDT A A D VIET +P PSA +EALSAL NLGYAPGDAA AVAQA+G+ P+A T DLIR+AL+ LAPKG Sbjct: 14 SDHVLIDVRGVGYLVFCSERTLAALPGVGEVVALYTDLLVREDVMQLFGFTTLTEKEWHRLLTSVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGVGPKIAQRVVLDLKDKAPSVMGMSDTQATVAAQS--SDAVIETRAAPSPVVQNPSAQ--AEALSALSNLGYAPGDAAAAVAQAAGELPDAETPDLIRAALKRLAPKG 218
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|254767384|sp|B9KKV6.1|RUVA_RHOSK (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA) HSP 1 Score: 242.662 bits (618), Expect = 3.182e-78 Identity = 134/210 (63.81%), Postives = 164/210 (78.10%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETV----PVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370 DHVLIDVRGVGY+VYVSDRTLA +PG GEAV+LYT+L+VREDLLQLFGF +++EKEWHRLLM++ G+GAKA MAILG LG+EG +RAI LGD +I+AAPG+GPKIAQRVV ELK KAP +MA+ +A A + P+ + + AP PP ++ALSAL NLGY P DAA AVAQA+G+SP+A TA LIR+AL+LLAPK Sbjct: 15 DHVLIDVRGVGYIVYVSDRTLASMPGLGEAVALYTELVVREDLLQLFGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKIAQRVVLELKSKAPALMAMGGGTAALAPSEPPEPQPGTSSGSRRKTRAP-EPPRPSHTADALSALANLGYQPTDAAQAVAQAAGESPDADTAALIRAALKLLAPK 223
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|90135713|sp|Q3J0F6.1|RUVA_RHOS4 (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA >gi|166200251|sp|A3PLU4.1|RUVA_RHOS1 RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA) HSP 1 Score: 237.269 bits (604), Expect = 5.492e-76 Identity = 136/221 (61.54%), Postives = 167/221 (75.57%), Query Frame = 0 Query: 154 VQIKGPDAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETV----PVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370 + +GPD HVLIDVRGVGY+VYVSDRTLA +PG GE V+LYT+L+VREDLLQLFGF +++EKEWHRLLM++ G+GAKA MAILG LG+EG +RAI LGD +I+AAPG+GPKIAQRVV ELK KAP +MA+ +A A + P+ E + AP PP ++ALSAL NLGY P DAA AVAQA+G+SP+A TA LIR+AL+LLAPK Sbjct: 9 LDFRGPD-----HVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTELVVREDLLQLFGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTARAITLGDARSIQAAPGIGPKIAQRVVLELKSKAPALMAMGGGTAALAPSEPPEPEPGTSSGSRRKTRAP-EPPRPSHTADALSALANLGYQPTDAAQAVAQAAGESPDADTAALIRAALKLLAPK 223
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|166200252|sp|A4WRW8.1|RUVA_RHOS5 (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA) HSP 1 Score: 237.269 bits (604), Expect = 5.552e-76 Identity = 120/192 (62.50%), Postives = 149/192 (77.60%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAI---SDTSAPSAMVDLPQDEVIETVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPE 353 DHVLIDVRGVGY+V+VSDRTLA +P GE V+LYT+L+VREDLLQLFGF +++EKEWHRLLM++ G+GAKA MAILG LG+EGV+RAI+LGD +I+AAPGVGPKIAQRVV ELK KAP +M + + A + + + P++ P A PP+A +ALSAL NLGY P DAA AVAQASGD+P+ Sbjct: 15 DHVLIDVRGVGYIVHVSDRTLAAMPAPGEGVALYTELVVREDLLQLFGFTTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGVARAISLGDARSIQAAPGVGPKIAQRVVLELKSKAPALMVMGGAAPARAAAVVEETPEEPAPRRKPSTRAAPPPAANHTGDALSALTNLGYQPSDAAQAVAQASGDNPQ 206
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|81349137|sp|Q5LNT7.1|RUVA_RUEPO (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA) HSP 1 Score: 228.409 bits (581), Expect = 1.630e-72 Identity = 135/214 (63.08%), Postives = 159/214 (74.30%), Query Frame = 0 Query: 160 DAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIE---TVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370 D DHVLIDVRGVGY+VY SDRTLA LPG GE V+LYTD++VREDL+QLFGF SL EKEWHRLL S+ G+GAK S+AILG LG +GVSRAIALGDW ++K+A GVGPK AQR+V +LKDKAP VMA+ T A + + EVIE P A + + + ALSAL NLGY P DAA AVAQA+ ++PEA DLIR+ALRLLAPK Sbjct: 10 DYRSTDHVLIDVRGVGYIVYCSDRTLAALPGVGEVVALYTDMVVREDLMQLFGFMSLAEKEWHRLLCSVQGVGAKVSLAILGALGPDGVSRAIALGDWASVKSAKGVGPKTAQRIVLDLKDKAPGVMAMGGTVAQAMEGAVEVVEVIEPAAPAPRKAAPPGGAGAATAGALSALSNLGYGPSDAAAAVAQAAAEAPEAGETDLIRAALRLLAPK 223
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|189045752|sp|A8LHP9.1|RUVA_DINSH (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA) HSP 1 Score: 228.024 bits (580), Expect = 2.281e-72 Identity = 128/211 (60.66%), Postives = 160/211 (75.83%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDT--SAPSAMVD--LPQDEVIETVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371 DH+++DVRGVGY+V S+RTLAG+P G V+L+T+LLVREDLLQL+GF +L+EKEWHRLL S+ G+GAKASM+IL TLG +GV RAIALGDW A++ A GVGPKIAQRVVNELKDK P+VMA+ T +A +++ + E IE A PA P +A + ALSAL NLGY G+AA AVA A+G+ T D+IR+ALRLLAPKG Sbjct: 15 DHIVLDVRGVGYVVQCSERTLAGMPAPGGPVALFTELLVREDLLQLYGFPTLLEKEWHRLLTSVQGVGAKASMSILSTLGVDGVGRAIALGDWGALRKAQGVGPKIAQRVVNELKDKGPEVMAMGGTLEAALDGVIEDGMAASEGIEPPSAARPAVPSAASDQAGALSALVNLGYGQGEAASAVATAAGEGAVGET-DIIRAALRLLAPKG 224
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|123094354|sp|Q28TT0.1|RUVA_JANSC (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA) HSP 1 Score: 223.787 bits (569), Expect = 9.447e-71 Identity = 135/215 (62.79%), Postives = 157/215 (73.02%), Query Frame = 0 Query: 160 DAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDT---SAPSAMVDLP-QDEVIETVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370 D +DH LIDV GVGY+V+ SDRTLA LP GE V+LYTDLLVREDLLQLFGF S EKEWHRLL S+ G+GAKASMAILGTLG EG +RAI LGD AIKAAPGVGPK+AQRVV ELKDKAP VMA+ T + + D+P + P P++ + +EALSALQNLGY P DAA AVAQA+ ++T +LIR+ALRLLAPK Sbjct: 10 DYKGSDHALIDVGGVGYVVHCSDRTLAALPARGEVVALYTDLLVREDLLQLFGFLSPYEKEWHRLLTSVQGVGAKASMAILGTLGVEGAARAITLGDATAIKAAPGVGPKLAQRVVMELKDKAPAVMAMGGTLDDAMDDVVDDMPGESAAPAPAPQPRAPKRPASNAQAEALSALQNLGYGPSDAAQAVAQAA--ESASNTPELIRAALRLLAPK 222
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|166230580|sp|A1AZW3.1|RUVA_PARDP (RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA) HSP 1 Score: 222.246 bits (565), Expect = 3.174e-70 Identity = 136/212 (64.15%), Postives = 167/212 (78.77%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVD---LPQDEVIE---TVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370 DHVLIDVRGVGY+V+VS+RT A LP G+A +LYT+LLVREDLLQLFGF +L+EKEWHRLL S+ G+GAK ++AILGTLG +G+SRA+ALGDW+A++ APGVGPK+AQRVV ELKDKAP VMA+ + VD LP+ E++E PV A A P SA + ++ALSAL NLGYAP +AA AVA+A+ P A TA LIR+ALRLLAPK Sbjct: 15 DHVLIDVRGVGYIVHVSERTAANLPPAGQATALYTELLVREDLLQLFGFPTLLEKEWHRLLTSVQGVGAKVALAILGTLGPDGLSRALALGDWSALRKAPGVGPKLAQRVVMELKDKAPAVMALGG----ALTVDPGPLPEVELVEAAVPAPVPAKAAPSSAQATADALSALGNLGYAPSEAASAVAEAAAREPAAPTAALIRAALRLLAPK 222
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|110282925|sp|Q3J0F5.1|RUVC_RHOS4 (RecName: Full=Crossover junction endodeoxyribonuclease RuvC; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC >gi|254767483|sp|B9KKV7.1|RUVC_RHOSK RecName: Full=Crossover junction endodeoxyribonuclease RuvC; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC) HSP 1 Score: 220.32 bits (560), Expect = 3.238e-70 Identity = 105/142 (73.94%), Postives = 117/142 (82.39%), Query Frame = 0 Query: 23 MRVIGIDPGLRNTGWGVIDVDGPRLAHVGNGVCCSDGDDLSERLLSLFNQLSEVIDAFSPTTAAVEKTFVNKDGAGTLKLGQARGIALLVPAKAGLEIGEYSPNTVKKTVVGVGHAQKGQVLHMVQLQLPGVQIKGPDAADA 164 MRV+GIDPGLRN GWGVIDV G RLAHV NG+C SD DL+ RLLSL QL++V+ F P TAAVE TFVNKDG TLKLGQARGIALLVPA+AGL +GEY+PN VKKTVVGVGHA K Q+ HMV+L LPGV + GPDAADA Sbjct: 1 MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSGDLAHRLLSLHGQLTDVLARFQPDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKEQIQHMVRLHLPGVHLAGPDAADA 142
BLAST of holliday junction dna helicase vs. SwissProt
Match: gi|166233290|sp|A3PLU5.1|RUVC_RHOS1 (RecName: Full=Crossover junction endodeoxyribonuclease RuvC; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC) HSP 1 Score: 219.55 bits (558), Expect = 7.065e-70 Identity = 105/142 (73.94%), Postives = 118/142 (83.10%), Query Frame = 0 Query: 23 MRVIGIDPGLRNTGWGVIDVDGPRLAHVGNGVCCSDGDDLSERLLSLFNQLSEVIDAFSPTTAAVEKTFVNKDGAGTLKLGQARGIALLVPAKAGLEIGEYSPNTVKKTVVGVGHAQKGQVLHMVQLQLPGVQIKGPDAADA 164 MRV+GIDPGLRN GWGVIDV G RLAHV NG+C SD DL++RLLSL QL++V+ F P TAAVE TFVNKDG TLKLGQARGIALLVPA+AGL +GEY+PN VKKTVVGVGHA K Q+ HMV+L LPGV + GPDAADA Sbjct: 1 MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSGDLAQRLLSLHGQLTDVLARFQPDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGEYAPNAVKKTVVGVGHAAKEQIQHMVRLHLPGVALAGPDAADA 142
BLAST of holliday junction dna helicase vs. nr
Match: gi|1134294225|ref|WP_076534521.1| (Holliday junction branch migration protein RuvA [Roseovarius nanhaiticus] >gi|1094454050|emb|SEL11874.1| Holliday junction DNA helicase subunit RuvA [Roseovarius nanhaiticus] >gi|1131818939|emb|SIS20197.1| Holliday junction DNA helicase subunit RuvA [Roseovarius nanhaiticus]) HSP 1 Score: 283.493 bits (724), Expect = 9.471e-92 Identity = 142/212 (66.98%), Postives = 172/212 (81.13%), Query Frame = 0 Query: 160 DAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371 D ADHVLIDVRGVGY+V+ SDRT+ LP GE +LYTDLLVRED+LQLFGF +LVEKEWHRLLMS+ G+GAKAS+AILGTLG G+ RAIALGDWN++KAA G+GPK AQRVVNELKDKAP++MA+ AP+ ++ +D+VIE +P A G +EALSAL NLGYAPG+A+GAVAQA+GD P+A+ ADLIR+AL+LLAPKG Sbjct: 10 DYRAADHVLIDVRGVGYLVFCSDRTMQALPRAGEHAALYTDLLVREDILQLFGFTTLVEKEWHRLLMSVQGVGAKASLAILGTLGPNGIGRAIALGDWNSVKAAKGIGPKTAQRVVNELKDKAPEIMAMGAAPAPAPVLPSGEDDVIEAIPAAPAPVSAGPGPQAEALSALTNLGYAPGEASGAVAQAAGDIPDANVADLIRAALKLLAPKG 221
BLAST of holliday junction dna helicase vs. nr
Match: gi|1223391228|ref|WP_091429297.1| (Holliday junction branch migration protein RuvA [Aliiroseovarius sediminilitoris] >gi|1094360536|emb|SEW08950.1| Holliday junction DNA helicase subunit RuvA [Aliiroseovarius sediminilitoris]) HSP 1 Score: 280.411 bits (716), Expect = 1.839e-90 Identity = 147/211 (69.67%), Postives = 170/211 (80.57%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIE----TVPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371 DHVLIDVRGVGY+VYVSDRT+A LPG GEAV+LYT+LLVRED LQLFGF +LVEKEWHRLLMS+ GIGAKASMAILGTLG +GVSRAIALGDWNA+KAA G+GPK AQRVV ELKDKA VMA+S ++ + + D VIE + PV AP + +A + SEALSAL NLGYAPG+AA AVAQA G+ T+ LIR+AL+LLAPKG Sbjct: 15 DHVLIDVRGVGYLVYVSDRTMASLPGPGEAVALYTELLVREDNLQLFGFTTLVEKEWHRLLMSVQGIGAKASMAILGTLGPDGVSRAIALGDWNAVKAAKGIGPKTAQRVVLELKDKAASVMALSGQASVATGSFVQDDAVIEPSTPSAPVTAPVSTGNAAAQSEALSALTNLGYAPGEAASAVAQALGEDTTLDTSGLIRAALKLLAPKG 225
BLAST of holliday junction dna helicase vs. nr
Match: gi|1189759653|ref|WP_085804215.1| (Holliday junction branch migration protein RuvA [Roseovarius albus] >gi|1188019247|emb|SLN19683.1| Holliday junction ATP-dependent DNA helicase RuvA [Roseovarius albus]) HSP 1 Score: 279.256 bits (713), Expect = 5.957e-90 Identity = 149/213 (69.95%), Postives = 176/213 (82.63%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAI----SDTSAPSAMVDLPQDEVIET--VPVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371 DHVLIDVRGVGY+VY S+RTL LP GE V+LYTDLLVRED+LQLFGF +LVEKEWHRLLMS+ G+GAKA++AI+GTLG + VSRAIALGDWNA+KAA G+GPK AQRVVNELKDKAP+VMA+ S T+AP A D+P DEVIET P APA +AG+ +EALSAL NLGYAPG+AA AV Q +GD+P+A T+D+IR AL+ LAPKG Sbjct: 15 DHVLIDVRGVGYLVYCSERTLQALPRVGEHVALYTDLLVREDILQLFGFTTLVEKEWHRLLMSVQGVGAKAALAIMGTLGPDAVSRAIALGDWNAVKAAKGIGPKTAQRVVNELKDKAPEVMAMGASPSATTAPVA--DVPVDEVIETPMAPPKAPAVQENAGAQAEALSALTNLGYAPGEAAAAVVQVAGDNPDAGTSDMIRLALKSLAPKG 225
BLAST of holliday junction dna helicase vs. nr
Match: gi|518798833|ref|WP_019954787.1| (Holliday junction branch migration protein RuvA [Loktanella vestfoldensis]) HSP 1 Score: 277.715 bits (709), Expect = 1.977e-89 Identity = 145/209 (69.38%), Postives = 170/209 (81.34%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETVPVAAP-ATP-PSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371 DHVLIDVRGVGY+VYVSDR +AGLP GEAV+LYTDLLVREDL+QLFGF +LVEKEWHRLLMS+ GIGAKAS+AILG LG++GVSRAIALGDWNA+ A GVGPK AQRV+ ELKDKAP VMA+ + + D+VIE P AAP ATP P++ + ++A+SAL NLGYAPGDAA AVAQA G P+A + LIR+AL+LLAPKG Sbjct: 15 DHVLIDVRGVGYLVYVSDRVMAGLPRNGEAVALYTDLLVREDLMQLFGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDWNAVAKAKGVGPKTAQRVIIELKDKAPGVMALG-----AGLTAATGDDVIEADPAAAPRATPQPASTAQADAMSALANLGYAPGDAASAVAQALGADPQADASALIRAALKLLAPKG 218
BLAST of holliday junction dna helicase vs. nr
Match: gi|1120025675|ref|WP_072900042.1| (Holliday junction branch migration protein RuvA [Loktanella sediminum] >gi|1109849483|emb|SHG87619.1| Holliday junction DNA helicase subunit RuvA [Loktanella sediminum]) HSP 1 Score: 276.944 bits (707), Expect = 3.515e-89 Identity = 144/208 (69.23%), Postives = 169/208 (81.25%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETV-PVAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371 DHVLIDVRGVGY+VYVS+R +A LP GEAV+LYTDLLVRED LQLFGF +LVEKEWHRLLMS+ GIGAKASMAILGT+G++GVSRAIALGDWNAI A GVGPK AQRV ELKDKAP VMA+ T A ++ DEV+E + PVAAP P + + +EALSAL NLGYAPG+AA AVA++ G P+A T+ LIR++L+LLAPKG Sbjct: 15 DHVLIDVRGVGYLVYVSNRVMASLPSNGEAVALYTDLLVREDNLQLFGFTTLVEKEWHRLLMSVQGIGAKASMAILGTIGADGVSRAIALGDWNAIAKAKGVGPKTAQRVAIELKDKAPGVMAMGGTVAQAS-----GDEVVEVIEPVAAPTAPMANPAQAEALSALGNLGYAPGEAASAVAESVGADPDADTSTLIRASLKLLAPKG 217
BLAST of holliday junction dna helicase vs. nr
Match: gi|1124354984|ref|WP_074645526.1| (Holliday junction branch migration protein RuvA [Celeribacter baekdonensis] >gi|1086690331|emb|SDF75594.1| Holliday junction DNA helicase subunit RuvA [Celeribacter baekdonensis]) HSP 1 Score: 276.174 bits (705), Expect = 9.078e-89 Identity = 144/220 (65.45%), Postives = 175/220 (79.55%), Query Frame = 0 Query: 160 DAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQ-DEVIETVPVA-------APATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371 D DHV+IDVRGVGY+V++++RT LPG G VSLYTD+LVREDL+QLFGF+SL+EKEW+RLL+S+ GIG+KA+MA+LGTLG E RAIALGDWNA+KAAPGVGPKIAQRVVNELKDKAP VMA+ T A S + + PQ DEVIET A AP P+A S +EA+SALQNLGY+P DA AVAQ++ D+P+A T+ LIR+AL+LLAPKG Sbjct: 10 DYIGTDHVMIDVRGVGYIVHINERTRMSLPGRGAPVSLYTDMLVREDLMQLFGFSSLLEKEWYRLLISVQGIGSKAAMAVLGTLGPEATGRAIALGDWNAVKAAPGVGPKIAQRVVNELKDKAPAVMAMGGTLAKS-LAEAPQVDEVIETDAPAPKPRVANAPVPKPNASSEAEAMSALQNLGYSPSDAVQAVAQSAQDAPDADTSTLIRAALKLLAPKG 228
BLAST of holliday junction dna helicase vs. nr
Match: gi|1221756939|ref|WP_089881744.1| (Holliday junction branch migration protein RuvA [Citreimonas salinaria] >gi|1088986601|emb|SDY21776.1| Holliday junction DNA helicase subunit RuvA [Citreimonas salinaria]) HSP 1 Score: 275.404 bits (703), Expect = 1.548e-88 Identity = 144/210 (68.57%), Postives = 168/210 (80.00%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLPQDEVIETVPVAAPATPPSAGSV----SEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPK 370 DHVLIDVRGVGY+VY SDRTLA LP GEA +L+TDLLVREDLLQLFGF +LVEKEWHRLLM + G+GAKAS+AILGTLG++GVSRAIALGDWNA+KAA G+GPK AQRVVNEL+DKAP VMA+ + + V P VI+ P AA +TPP A +EALSAL NLGYAP +AA AVA+A ++P+A TA LIR+ALRLLAPK Sbjct: 15 DHVLIDVRGVGYVVYCSDRTLAALPRAGEAAALWTDLLVREDLLQLFGFPTLVEKEWHRLLMGVQGVGAKASLAILGTLGADGVSRAIALGDWNAVKAAKGIGPKTAQRVVNELRDKAPTVMAMGEQA-----VSAPDASVIDDAPGAAASTPPPARPAPSGRAEALSALSNLGYAPSEAARAVAEALDEAPDADTATLIRAALRLLAPK 219
BLAST of holliday junction dna helicase vs. nr
Match: gi|1213277214|ref|WP_088663573.1| (MULTISPECIES: Holliday junction branch migration protein RuvA [Rhodobacteraceae] >gi|1212231924|gb|OWU68852.1| ATP-dependent DNA helicase RuvA [Roseovarius sp. 22II1-1F6A] >gi|1253262507|gb|ATI42777.1| Holliday junction branch migration protein RuvA [Celeribacter manganoxidans]) HSP 1 Score: 273.092 bits (697), Expect = 1.676e-87 Identity = 155/219 (70.78%), Postives = 179/219 (81.74%), Query Frame = 0 Query: 160 DAADADHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDLP--QDEVIETVPVAAPATP---PSAGSVSE--ALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371 D +DHVLIDVRGVGY+VYVS+RT+ LPG EAV+LYTDL+VREDLLQL+GF +L+EKEWHRLL+S+ GIGAKAS+AILGTLG EGVSRAIALGDWNA+KAAPGVGPKIAQRVVNELKDKAP VMA++ T +A LP +VIET TP PS G+V++ ALSAL NLGYAPG+AAGAVAQA+ D+PEA DLIR+ALRLLAPKG Sbjct: 10 DYRASDHVLIDVRGVGYLVYVSERTMMALPGPNEAVALYTDLVVREDLLQLYGFPTLLEKEWHRLLVSVQGIGAKASLAILGTLGPEGVSRAIALGDWNAVKAAPGVGPKIAQRVVNELKDKAPGVMALAATMNRTAGDTLPDIDTDVIETPAPPRRGTPSPAPSGGAVAQADALSALSNLGYAPGEAAGAVAQAASDAPEAEAPDLIRAALRLLAPKG 228
BLAST of holliday junction dna helicase vs. nr
Match: gi|1124253569|ref|WP_074552370.1| (Holliday junction branch migration protein RuvA [Rhodobacter capsulatus] >gi|1086524328|emb|SDE29690.1| Holliday junction DNA helicase subunit RuvA [Rhodobacter capsulatus]) HSP 1 Score: 272.322 bits (695), Expect = 2.837e-87 Identity = 150/212 (70.75%), Postives = 168/212 (79.25%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAISDTSAPSAMVDL-PQDEVIETVP----VAAPATPPSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEAS-TADLIRSALRLLAPK 370 DHVLIDVRGVGY+V+VS RT A LP GEA +LYT+LLVREDLLQLFGF +L+EKEWHRLL S+ GIGAKAS+AILGTLG EGVSRA+ALGDWNAIKAAPGVGPK+AQRVV ELKDKAP VMA+ T VD P DEVIET P APA +EALSAL NLGY+P DAA AVA+AS ++PEA+ TA LIR+ALRLLAPK Sbjct: 15 DHVLIDVRGVGYIVHVSSRTAANLPPVGEACALYTELLVREDLLQLFGFPTLIEKEWHRLLTSVQGIGAKASLAILGTLGPEGVSRALALGDWNAIKAAPGVGPKLAQRVVMELKDKAPTVMAMGGT----LTVDTAPSDEVIETAPQPVKRPAPAATRQVNFTAEALSALTNLGYSPSDAATAVARAS-ENPEATDTAKLIRTALRLLAPK 221
BLAST of holliday junction dna helicase vs. nr
Match: gi|1199467250|ref|WP_087206279.1| (Holliday junction branch migration protein RuvA [Loktanella vestfoldensis] >gi|1198347249|gb|ART99990.1| Holliday junction ATP-dependent DNA helicase RuvA [Loktanella vestfoldensis]) HSP 1 Score: 271.166 bits (692), Expect = 5.918e-87 Identity = 145/211 (68.72%), Postives = 169/211 (80.09%), Query Frame = 0 Query: 165 DHVLIDVRGVGYMVYVSDRTLAGLPGTGEAVSLYTDLLVREDLLQLFGFNSLVEKEWHRLLMSISGIGAKASMAILGTLGSEGVSRAIALGDWNAIKAAPGVGPKIAQRVVNELKDKAPKVMAI--SDTSAPSAMVDLPQDEVIETVPVAAP-ATP-PSAGSVSEALSALQNLGYAPGDAAGAVAQASGDSPEASTADLIRSALRLLAPKG 371 DHVLIDVRGVGY+VYVS+R +A LP GEAV+LYTDLLVREDL+QLFGF +LVEKEWHRLLMS+ GIGAKAS+AILG LG++GVSRAIALGDWNA+ A GVGPK AQRV+ ELKDKAP +MA+ S T+A DEVIE P AP ATP P++ + ++A+SAL NLGYAPGDAA AVAQA G P+A LIR+AL+LLAPKG Sbjct: 15 DHVLIDVRGVGYLVYVSERVMASLPRNGEAVALYTDLLVREDLMQLFGFTTLVEKEWHRLLMSVQGIGAKASLAILGALGADGVSRAIALGDWNAVAKAKGVGPKTAQRVIIELKDKAPGIMALGGSVTAATG-------DEVIEADPAPAPRATPQPASTAQADAMSALANLGYAPGDAASAVAQALGADPQADAGALIRAALKLLAPKG 218 The following BLAST results are available for this feature:
BLAST of holliday junction dna helicase vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 0
BLAST of holliday junction dna helicase vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of holliday junction dna helicase vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold9686_size2354:1043..2277- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold9686_size2354-processed-gene-0.1 ID=snap_masked-scaffold9686_size2354-processed-gene-0.1|Name=holliday junction dna helicase|organism=Tigriopus kingsejongensis|type=gene|length=1235bp|location=Sequence derived from alignment at scaffold9686_size2354:1043..2277- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'holliday junction dna helicase' has the following synonyms
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