bardet-biedl syndrome 4 protein homolog, snap_masked-scaffold96_size378025-processed-gene-2.6 (gene) Tigriopus kingsejongensis

Overview
Namebardet-biedl syndrome 4 protein homolog
Unique Namesnap_masked-scaffold96_size378025-processed-gene-2.6
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. L. salmonis genes
Match: EMLSAG00000003069 (supercontig:LSalAtl2s:LSalAtl2s173:1296863:1298392:1 gene:EMLSAG00000003069 transcript:EMLSAT00000003069 description:"augustus_masked-LSalAtl2s173-processed-gene-13.0")

HSP 1 Score: 142.895 bits (359), Expect = 1.116e-41
Identity = 66/128 (51.56%), Postives = 91/128 (71.09%), Query Frame = 0 
Query:    1 MNPPDDPPETNVNGASHSGGVQPDGPQPATGGGVALKPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            MNP  +  ++  NG + +  +              +KP++KKAPE PA+ER+NWLIHNHYVRKEFE CK I+ +  +E+ G CEYA+YV GLILR EGKIQESLE F+ICN++NP++ D++KQ+ +SL
Sbjct:    1 MNPALETSQSTSNGQTGNLSISNXSN---------IKPRSKKAPEXPAMERRNWLIHNHYVRKEFETCKMILTSQLEESGGNCEYAHYVNGLILRQEGKIQESLEAFRICNVINPSNPDNVKQMGKSL 119
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BLAST of bardet-biedl syndrome 4 protein homolog vs. SwissProt
Match: gi|123910239|sp|Q28G25.1|BBS4_XENTR (RecName: Full=Bardet-Biedl syndrome 4 protein homolog)

HSP 1 Score: 135.576 bits (340), Expect = 2.199e-37
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 0 
Query:   37 KPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            K + +K PELP LER+NWLIH HYVRK++E CK++I+     T+G+CEYA YVQ LILR EGKIQESLE+FQ C +LNP S+D++KQ+ARSL
Sbjct:   17 KSRVQKVPELPILERRNWLIHLHYVRKDYESCKAVIKEQLQATQGVCEYAVYVQALILRLEGKIQESLELFQTCAVLNPTSSDNLKQVARSL 108
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. SwissProt
Match: gi|160359000|sp|Q96RK4.2|BBS4_HUMAN (RecName: Full=Bardet-Biedl syndrome 4 protein)

HSP 1 Score: 135.191 bits (339), Expect = 2.490e-37
Identity = 58/92 (63.04%), Postives = 75/92 (81.52%), Query Frame = 0 
Query:   37 KPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            KP+ KKAPE P LE++NWLIH HY+RK++E CK++I+    ET+G+CEYA YVQ LI R EG IQESLE+FQ C +L+P SAD++KQ+ARSL
Sbjct:   20 KPRQKKAPEFPILEKQNWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQSADNLKQVARSL 111
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. SwissProt
Match: gi|37537790|sp|Q8C1Z7.1|BBS4_MOUSE (RecName: Full=Bardet-Biedl syndrome 4 protein homolog)

HSP 1 Score: 131.339 bits (329), Expect = 7.337e-36
Identity = 55/92 (59.78%), Postives = 75/92 (81.52%), Query Frame = 0 
Query:   37 KPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            KP++KKAP+ P +E++NWLIH HY+RK++E CK++I+    ET+G+CEYA YVQ LI R EG IQESLE+FQ C +L+P  AD++KQ+ARSL
Sbjct:   20 KPRSKKAPDFPIVEKQNWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQCADNLKQVARSL 111
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. SwissProt
Match: gi|122145853|sp|Q1JQ97.1|BBS4_BOVIN (RecName: Full=Bardet-Biedl syndrome 4 protein homolog)

HSP 1 Score: 124.79 bits (312), Expect = 2.155e-33
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 0 
Query:   37 KPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            KP  KKAPE P LE++NWLIH +Y++K++E CK++I+    ET G+CEYA YVQ LI R EG IQESL +FQ+C  L+P  AD++KQ+ARSL
Sbjct:   20 KPVLKKAPEFPILEKQNWLIHLYYIQKDYEACKAVIKEQLQETHGLCEYAIYVQALIFRLEGNIQESLRLFQMCAFLSPQCADNLKQVARSL 111
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. SwissProt
Match: gi|145558859|sp|A1Z8E9.1|BBS4_DROME (RecName: Full=Bardet-Biedl syndrome 4 protein homolog)

HSP 1 Score: 54.299 bits (129), Expect = 1.958e-8
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 0 
Query:   43 APELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            AP++P+    +WL+H ++ R+EF  C+ +I    +      EY  +VQGLI R EG   E+L   Q    LNP + +  K++ R+L
Sbjct:   27 APKMPSDANIDWLLHIYFTRREFTRCRRLIERELNRHLN-PEYLYFVQGLIDREEGNHIEALRHLQKSAELNPRNIETYKEIGRTL 111
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BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Match: gi|1325285198|ref|XP_023327314.1| (Bardet-Biedl syndrome 4 protein-like [Eurytemora affinis])

HSP 1 Score: 165.622 bits (418), Expect = 9.399e-47
Identity = 80/125 (64.00%), Postives = 95/125 (76.00%), Query Frame = 0 
Query:    4 PDDPPETNVNGASHSGGVQPDGPQPATGGGVALKPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            P++P E  VNG + +  VQP    P+T      KP+ KKAPELP LER+NWLIH HY+RKE++LCK II+    ET  MCEYANYVQGLILR EGKIQESLE FQ+CNILNPNS ++IKQ+ARSL
Sbjct:    3 PNEPAEAAVNGQTRT--VQP----PSTTSSALKKPRPKKAPELPPLERRNWLIHLHYIRKEYQLCKEIIKVQLRETHSMCEYANYVQGLILRQEGKIQESLEQFQVCNILNPNSGENIKQMARSL 121
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Match: gi|1020557213|ref|XP_016110908.1| (PREDICTED: Bardet-Biedl syndrome 4 protein-like [Sinocyclocheilus grahami])

HSP 1 Score: 139.043 bits (349), Expect = 8.488e-40
Identity = 62/92 (67.39%), Postives = 78/92 (84.78%), Query Frame = 0 
Query:   37 KPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            KP+ KKAP+LP LER+NWLIH HY+RK++E CK+II+    ET+GMCEYA YVQ LI+R EGKIQ+SLE+FQ C ILNP S+D++KQ+ARSL
Sbjct:   20 KPRPKKAPDLPILERRNWLIHLHYIRKDYETCKAIIKEQLHETQGMCEYAVYVQALIMRLEGKIQQSLELFQSCAILNPKSSDNLKQVARSL 111
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Match: gi|1049236031|ref|XP_017556689.1| (PREDICTED: Bardet-Biedl syndrome 4 protein isoform X1 [Pygocentrus nattereri])

HSP 1 Score: 148.673 bits (374), Expect = 9.078e-40
Identity = 69/108 (63.89%), Postives = 85/108 (78.70%), Query Frame = 0 
Query:   21 VQPDGPQPATGGGVALKPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            V+PD P P T      KP+ +KAPELP LER+NWLIH HY+RK++E CK+II+    ET+GMCEYA YVQ LILR EGKIQ+SLE+FQ C ILNP S+D++KQ+ARSL
Sbjct:    7 VKPDAPFPVTTDPTK-KPRPRKAPELPILERRNWLIHLHYIRKDYETCKAIIKEQLQETQGMCEYAVYVQALILRLEGKIQQSLELFQSCAILNPTSSDNLKQVARSL 113
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Match: gi|1049236033|ref|XP_017556690.1| (PREDICTED: Bardet-Biedl syndrome 4 protein isoform X2 [Pygocentrus nattereri])

HSP 1 Score: 148.673 bits (374), Expect = 9.525e-40
Identity = 69/108 (63.89%), Postives = 85/108 (78.70%), Query Frame = 0 
Query:   21 VQPDGPQPATGGGVALKPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            V+PD P P T      KP+ +KAPELP LER+NWLIH HY+RK++E CK+II+    ET+GMCEYA YVQ LILR EGKIQ+SLE+FQ C ILNP S+D++KQ+ARSL
Sbjct:    7 VKPDAPFPVTTDPTK-KPRPRKAPELPILERRNWLIHLHYIRKDYETCKAIIKEQLQETQGMCEYAVYVQALILRLEGKIQQSLELFQSCAILNPTSSDNLKQVARSL 113
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Match: gi|1101552487|ref|XP_018942170.1| (PREDICTED: Bardet-Biedl syndrome 4 protein-like [Cyprinus carpio])

HSP 1 Score: 139.813 bits (351), Expect = 6.605e-39
Identity = 63/92 (68.48%), Postives = 78/92 (84.78%), Query Frame = 0 
Query:   37 KPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            KP+ KKAPELP LER+NWLIH HY+RK++E CK+II+    ET+GMCEYA YVQ LI+R EGKIQ+SLE+FQ C ILNP S+D++KQ+ARSL
Sbjct:   20 KPRPKKAPELPILERRNWLIHLHYIRKDYETCKAIIKEQLHETQGMCEYAVYVQALIMRLEGKIQQSLELFQSCAILNPKSSDNLKQVARSL 111
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Match: gi|585667651|ref|XP_006817353.1| (PREDICTED: Bardet-Biedl syndrome 4 protein-like, partial [Saccoglossus kowalevskii])

HSP 1 Score: 143.28 bits (360), Expect = 2.161e-38
Identity = 65/94 (69.15%), Postives = 77/94 (81.91%), Query Frame = 0 
Query:   35 ALKPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
             LKPK KKAPELP  ER+NWLIH HYVRKEF  CKS+I+   +ET+GMCEYA YVQGLI R EG+IQESLE+FQ C++LN  S D++KQ+ARSL
Sbjct:   31 TLKPKTKKAPELPIFERRNWLIHLHYVRKEFNTCKSLIKEQLEETQGMCEYAVYVQGLIKRMEGRIQESLELFQTCSLLNSQSTDNLKQVARSL 124
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Match: gi|1249054732|ref|XP_022528146.1| (Bardet-Biedl syndrome 4 protein [Astyanax mexicanus])

HSP 1 Score: 144.821 bits (364), Expect = 2.622e-38
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 0 
Query:   21 VQPDGPQPATGGGVALKPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            V+ D P P        KP+ KKAPELP LER+NWLIH HY+RK++E CK+II+    ET+GMCEYA YVQ LILR EGKIQ+SLE+FQ C ILNP S+D++KQ+ARSL
Sbjct:    7 VKADAPLPVATDPK--KPRLKKAPELPILERRNWLIHLHYIRKDYETCKAIIKEQLQETQGMCEYAVYVQALILRLEGKIQQSLELFQSCAILNPTSSDNLKQVARSL 112
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Match: gi|116284194|gb|AAI24198.1| (Bardet-Biedl syndrome 4 [Danio rerio] >gi|182891006|gb|AAI64399.1| Bbs4 protein [Danio rerio])

HSP 1 Score: 140.969 bits (354), Expect = 4.506e-38
Identity = 62/92 (67.39%), Postives = 78/92 (84.78%), Query Frame = 0 
Query:   37 KPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            KP+ KKAPELP LER+NWLIH HY+RK++E CK+I++    ET+GMCEYA YVQ LI+R EGKIQESLE+FQ C I+NP S+D++KQ+ARSL
Sbjct:   20 KPRLKKAPELPILERRNWLIHLHYIRKDYETCKAIVKEQLHETQGMCEYAVYVQALIMRLEGKIQESLELFQSCAIINPTSSDNLKQVARSL 111
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Match: gi|1331777902|gb|PNI37566.1| (BBS4 isoform 4 [Pan troglodytes] >gi|1331895006|gb|PNJ43083.1| BBS4 isoform 4 [Pongo abelii])

HSP 1 Score: 134.806 bits (338), Expect = 4.892e-38
Identity = 58/92 (63.04%), Postives = 75/92 (81.52%), Query Frame = 0 
Query:   37 KPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            KP+ KKAPE P LE++NWLIH HY+RK++E CK++I+    ET+G+CEYA YVQ LI R EG IQESLE+FQ C +L+P SAD++KQ+ARSL
Sbjct:   20 KPRQKKAPEFPILEKQNWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQSADNLKQVARSL 111
[Close]
BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Match: gi|1067094413|ref|XP_018009095.1| (PREDICTED: Bardet-Biedl syndrome 4 protein-like [Hyalella azteca])

HSP 1 Score: 144.436 bits (363), Expect = 6.803e-38
Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 0 
Query:    1 MNPPDDPPETNVNGASHSGGVQPDGPQPATGGGVALKPKAKKAPELPALERKNWLIHNHYVRKEFELCKSIIRAVTDETKGMCEYANYVQGLILRHEGKIQESLEMFQICNILNPNSADHIKQLARSL 128
            MNPP +P +  VNG   SG         AT   V  K + KKAPEL +++R+NWL+H HYVR E++ C  + + +  ET+GMCEYANYVQ LILRH+GKI ESLE+FQ+CN+LNP S  ++KQ+ARSL
Sbjct:   30 MNPPSEPGDAPVNGTVPSG---------ATAPLVRAKGRPKKAPELGSVDRRNWLVHLHYVRCEYDDCLRLTKELLAETRGMCEYANYVQALILRHQGKIHESLELFQLCNVLNPKSVQNLKQMARSL 148
The following BLAST results are available for this feature:
BLAST of bardet-biedl syndrome 4 protein homolog vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000030691.116e-4151.56supercontig:LSalAtl2s:LSalAtl2s173:1296863:1298392... [more]
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BLAST of bardet-biedl syndrome 4 protein homolog vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
gi|123910239|sp|Q28G25.1|BBS4_XENTR2.199e-3764.13RecName: Full=Bardet-Biedl syndrome 4 protein homo... [more]
gi|160359000|sp|Q96RK4.2|BBS4_HUMAN2.490e-3763.04RecName: Full=Bardet-Biedl syndrome 4 protein[more]
gi|37537790|sp|Q8C1Z7.1|BBS4_MOUSE7.337e-3659.78RecName: Full=Bardet-Biedl syndrome 4 protein homo... [more]
gi|122145853|sp|Q1JQ97.1|BBS4_BOVIN2.155e-3358.70RecName: Full=Bardet-Biedl syndrome 4 protein homo... [more]
gi|145558859|sp|A1Z8E9.1|BBS4_DROME1.958e-834.88RecName: Full=Bardet-Biedl syndrome 4 protein homo... [more]
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BLAST of bardet-biedl syndrome 4 protein homolog vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325285198|ref|XP_023327314.1|9.399e-4764.00Bardet-Biedl syndrome 4 protein-like [Eurytemora a... [more]
gi|1020557213|ref|XP_016110908.1|8.488e-4067.39PREDICTED: Bardet-Biedl syndrome 4 protein-like [S... [more]
gi|1049236031|ref|XP_017556689.1|9.078e-4063.89PREDICTED: Bardet-Biedl syndrome 4 protein isoform... [more]
gi|1049236033|ref|XP_017556690.1|9.525e-4063.89PREDICTED: Bardet-Biedl syndrome 4 protein isoform... [more]
gi|1101552487|ref|XP_018942170.1|6.605e-3968.48PREDICTED: Bardet-Biedl syndrome 4 protein-like [C... [more]
gi|585667651|ref|XP_006817353.1|2.161e-3869.15PREDICTED: Bardet-Biedl syndrome 4 protein-like, p... [more]
gi|1249054732|ref|XP_022528146.1|2.622e-3862.96Bardet-Biedl syndrome 4 protein [Astyanax mexicanu... [more]
gi|116284194|gb|AAI24198.1|4.506e-3867.39Bardet-Biedl syndrome 4 [Danio rerio] >gi|18289100... [more]
gi|1331777902|gb|PNI37566.1|4.892e-3863.04BBS4 isoform 4 [Pan troglodytes] >gi|1331895006|gb... [more]
gi|1067094413|ref|XP_018009095.1|6.803e-3853.91PREDICTED: Bardet-Biedl syndrome 4 protein-like [H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold96_size378025supercontigscaffold96_size378025:276105..276491 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold96_size378025-processed-gene-2.6-mRNA-1snap_masked-scaffold96_size378025-processed-gene-2.6-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold96_size378025:276105..276491+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold96_size378025-processed-gene-2.6 ID=snap_masked-scaffold96_size378025-processed-gene-2.6|Name=bardet-biedl syndrome 4 protein homolog|organism=Tigriopus kingsejongensis|type=gene|length=387bp|location=Sequence derived from alignment at scaffold96_size378025:276105..276491+ (Tigriopus kingsejongensis)
ATGAATCCACCCGACGATCCCCCGGAAACCAACGTGAATGGAGCAAGTCA
CTCGGGTGGTGTCCAGCCAGATGGACCTCAGCCAGCCACGGGAGGGGGCG
TGGCCCTCAAGCCCAAGGCGAAAAAGGCTCCCGAGTTGCCGGCTCTGGAG
CGGAAGAACTGGCTGATCCACAATCACTACGTGCGAAAAGAGTTCGAGTT
GTGCAAATCCATCATTCGAGCGGTGACCGATGAGACGAAAGGCATGTGCG
AGTACGCCAACTACGTCCAGGGGCTCATACTGAGGCACGAGGGCAAGATC
CAGGAGTCCTTGGAGATGTTCCAGATCTGCAACATCCTCAATCCCAATAG
TGCAGATCACATCAAGCAATTGGCACGATCGCTGTGA
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Synonyms
The feature 'bardet-biedl syndrome 4 protein homolog' has the following synonyms
Synonym
Tk04980
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