complexin, snap_masked-scaffold993_size72668-processed-gene-0.5 (gene) Tigriopus kingsejongensis

Overview
Namecomplexin
Unique Namesnap_masked-scaffold993_size72668-processed-gene-0.5
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of complexin vs. L. salmonis genes
Match: EMLSAG00000001902 (supercontig:LSalAtl2s:LSalAtl2s1326:52134:55531:-1 gene:EMLSAG00000001902 transcript:EMLSAT00000001902 description:"maker-LSalAtl2s1326-snap-gene-0.18")

HSP 1 Score: 71.2478 bits (173), Expect = 3.161e-17
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0 
Query:   39 SYCNSIPGVGGGGGDDDEGESKEEQMEQERLRQEAIKQAERERRDKYKKQEDEREVMRQSIRDK 102
            S  +SIPGVG    DDD GE+KEEQ EQERLRQEAIKQAERERRDKYKKQEDERE +RQ IRDK
Sbjct:    7 SVTDSIPGVGSSSNDDD-GETKEEQEEQERLRQEAIKQAERERRDKYKKQEDERENLRQGIRDK 69
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BLAST of complexin vs. SwissProt
Match: gi|5921801|sp|O42106.1|CPLX1_NARJA (RecName: Full=Complexin-1; AltName: Full=NJ-synaphin-2)

HSP 1 Score: 48.9062 bits (115), Expect = 2.689e-7
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0 
Query:   52 GDDDEGESKEEQMEQERLRQEAIKQAERERRDKYKKQEDEREVMRQSIRDK 102
            G D+E +   E+ E+ERL  EA++QAE ER  KY K E EREVMRQ IRDK
Sbjct:   21 GGDEEKDPDAEKKEEERL--EALRQAEEERAGKYAKMEAEREVMRQGIRDK 69
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BLAST of complexin vs. nr
Match: gi|1325268028|ref|XP_023344078.1| (complexin-like [Eurytemora affinis])

HSP 1 Score: 62.3882 bits (150), Expect = 4.134e-10
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 0 
Query:   43 SIPGVGGGGGDDDEGESKEEQMEQERLRQEAIKQAERERRDKYKKQEDEREVMRQSIRDK 102
            S+P VGG   DD  G +KEEQ EQE++RQ+AIK+AERER++KYKK+ + R+V R  IRD+
Sbjct:   15 SVPKVGGS--DDSNGMTKEEQKEQEQMRQDAIKRAERERQNKYKKEREVRDVERDKIRDR 72
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BLAST of complexin vs. nr
Match: gi|1022767437|gb|KZS12268.1| (Complexin [Daphnia magna])

HSP 1 Score: 55.0694 bits (131), Expect = 1.179e-7
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 0 
Query:   30 FPPRYVEGTSYCNSIPGVGGGGGDDDEGESKEEQMEQERLRQEAIKQAERERRDKYKKQEDEREVMRQSIRDK 102
            F  + + G S  N++ G+GG   D ++G++K++  E ER R EAIK+AE  R++K++K E ERE MRQ IRDK
Sbjct:    4 FVAKQMLG-SKMNAVKGLGGN--DSEDGDTKDKDDEAERERLEAIKEAEDRRKEKHRKMEAERENMRQDIRDK 73
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BLAST of complexin vs. nr
Match: gi|253683501|ref|NP_001156645.1| (complexin [Acyrthosiphon pisum] >gi|253683503|ref|NP_001156646.1| complexin [Acyrthosiphon pisum] >gi|985391609|ref|XP_015380520.1| PREDICTED: complexin isoform X1 [Diuraphis noxia] >gi|1229894369|ref|XP_022167716.1| complexin isoform X1 [Myzus persicae] >gi|239791501|dbj|BAH72206.1| ACYPI007078 [Acyrthosiphon pisum] >gi|239792042|dbj|BAH72407.1| ACYPI007078 [Acyrthosiphon pisum])

HSP 1 Score: 54.6842 bits (130), Expect = 4.589e-7
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 0 
Query:   30 FPPRYVEGTSYCNSIPGVGGGGGDDDEGESKEEQMEQERLRQEAIKQAERERRDKYKKQEDEREVMRQSIRDK 102
            F  + V G    N++ G  G GG+    E KE+  E ER R EAI++AE  R++K++K E+ERE MRQ IRDK
Sbjct:    4 FVAKQVVGNKL-NAVKGAVGDGGES--AEDKEKNAEAERERLEAIREAEERRKEKHRKMEEEREKMRQEIRDK 73
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BLAST of complexin vs. nr
Match: gi|926651927|ref|XP_013792518.1| (complexin-like [Limulus polyphemus])

HSP 1 Score: 54.6842 bits (130), Expect = 6.292e-7
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0 
Query:   38 TSYCNSIPGVGGGGGDDDEGESKEEQMEQERLRQEAIKQAERERRDKYKKQEDEREVMRQSIRDK 102
            T  C S  G  GG G+  E +S+ EQ EQERL  EA+++AE  R++K++K E+ERE MRQ IRDK
Sbjct:   25 TLICWSSTGQMGGEGESQEDKSEAEQAEQERL--EALQEAEDRRKEKHRKLEEEREKMRQEIRDK 87
[Close]
BLAST of complexin vs. nr
Match: gi|321477027|gb|EFX87986.1| (complexin [Daphnia pulex])

HSP 1 Score: 54.299 bits (129), Expect = 6.992e-7
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 0 
Query:   30 FPPRYVEGTSYCNSIPGVGGGGGDDDEGESKEEQMEQERLRQEAIKQAERERRDKYKKQEDEREVMRQSIRDK 102
            F  + + G S  N++ G+GG   +D + + K+++ E+ERL  EAIK+AE  R++K++K E ERE MRQ IRDK
Sbjct:    4 FVAKQMLG-SKMNAVKGLGGNDSEDGDTKDKDDEAERERL--EAIKEAEDRRKEKHRKMEVERENMRQDIRDK 73
The following BLAST results are available for this feature:
BLAST of complexin vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000019023.161e-1779.69supercontig:LSalAtl2s:LSalAtl2s1326:52134:55531:-1... [more]
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BLAST of complexin vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
gi|5921801|sp|O42106.1|CPLX1_NARJA2.689e-758.82RecName: Full=Complexin-1; AltName: Full=NJ-synaph... [more]
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BLAST of complexin vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 5
Match NameE-valueIdentityDescription
gi|1325268028|ref|XP_023344078.1|4.134e-1058.33complexin-like [Eurytemora affinis][more]
gi|1022767437|gb|KZS12268.1|1.179e-746.58Complexin [Daphnia magna][more]
gi|253683501|ref|NP_001156645.1|4.589e-746.58complexin [Acyrthosiphon pisum] >gi|253683503|ref|... [more]
gi|926651927|ref|XP_013792518.1|6.292e-752.31complexin-like [Limulus polyphemus][more]
gi|321477027|gb|EFX87986.1|6.992e-745.21complexin [Daphnia pulex][more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold993_size72668supercontigscaffold993_size72668:12610..16325 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:syntaxin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold993_size72668-processed-gene-0.5-mRNA-1snap_masked-scaffold993_size72668-processed-gene-0.5-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold993_size72668:12610..16325-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold993_size72668-processed-gene-0.5 ID=snap_masked-scaffold993_size72668-processed-gene-0.5|Name=complexin|organism=Tigriopus kingsejongensis|type=gene|length=3716bp|location=Sequence derived from alignment at scaffold993_size72668:12610..16325- (Tigriopus kingsejongensis)
ATGCGTGATATGGTTGGCAGTGAGGAACCACTGCGAGGCCAGGCCAAGGC
GAAGGACGAATCGCTGGCTAATCAGAGGACTCGCGACTTTCCACCCCGAT
ATGTGGAGGGGACCAGTTACTGTAGTTAGCCCGACTAGGACGCTGACTCA
CTTCAAAAGGGCCAGCCCCGGGACAGGCTGGCTCAGGGGCTCGAATGCAA
ACCGCATGTAATCAACACGAACCAGTTGGATCGAGTCGGGCTTGTTTTGA
TCGTAATCTGGACAACGTAATTCATATTGATACTCTTCTTGTCAGTATCC
TCGCCTAAGTGCGTCCGAGTGGGTTTTTAGTATACGTACAAAAAACGGTC
CATGTCGGATTCGACATGGCTAACCATTTATGAGAGCCTCCTTGACTGGC
TATCACCTGGGTGGAAACGTGGGCGTCGGGCCTTTGAAGGTCGCATGTGT
AGCTCACAAGATCCTGCACACCTCATCTAACGCAATTATCTCCCCTAAGG
CGCTGTGAAGGCCATCTCAAATGCAGATTTTTCCCCTACTCACGACTCGC
TCTCGCTCTATCATCAACCGTATATGTGTGGAGTGAGAGCTGGGATGCGT
ATGAGTCCAATTAGGTTAGCTCATCCCAGGTCTGCATACGAATACGGTAG
ATAGCAAAAAAATGTATCCAGCCGCAGCAATGCGGAAGTCAAAATCCTCC
CGCGGCATATAACTCCCAGAAGAATGTTTGAGCCAATATTTGCCCAAGCC
ATGGTTAGTGTAACCTTCCCCTATCCAATAGCGGATCGAGCTCCCCACTT
GGTCTTGGGTCTTCGTTGTCCTCGAAATGGCCTATCTTTCTTTCTGCTTT
TGTGTTCTCTCTCTCTCTCGCTCATCTGGAGGCCTTTTTTCTTGCAGACA
GCATTCCTGGCGTGGGCGGCGGCGGCGGCGACGACGACGAGGGAGAGAGC
AAAGAGGAACAAATGGAACAAGAGCGTCTGCGCCAAGAGGCCATCAAGCA
GGCTGAGCGCGAGAGGAGGGATAAATACAAGAAGCAAGAGGACGAGAGAG
AGGTCATGAGGCAGTCCATCAGGGACAAGGTGAGTCGTCTGGGTATTCAC
GCACTGCCTCTATGGGCCTGTAGGGCACCCGTCGATCTAACGGGTTAGAC
AATAAGCTCATCGAACAGCGGGTCGCTTCAGGGTGTCTTGGAATCGCATC
CCAGAGTGGGTGAGTCGACAATAGCCTGGGGAAAATGTCTTCGAACCACC
CCGAGGAGGGAAAAATTTCCCTCTCCGAAGCAACTGTCAGCAAAAGAGAC
TATTCTTGGGATATTGATGTGAATAGAGTCTCGCAAATGGTCCACATAAT
ACTAATGTGTGAAAGACACGGTCATTCATGGCCATGGGTACGAAAGTGGG
CTTAGTGTTCCAATTCCAATTGAGAGGTAGATAAAGGCTGCATGTCCACC
ATCTGTATCGGCCAGCTAGGGAAACAAAAAGAGGGCCAACTATCCATGTA
AAAGTGCGAAATCGCCGAAAACTTGAGCGCATTGTCGTAATTCCAAAGCC
ATAGGAGTTGTAACCCAAGTACGACTAGAGCGATTGATATAGTTGGGCAA
GATGTATTTGCCTTTTTAAAGAAGTGTGTACATTAAGATTGTGGTCCCCA
GGAGCAAGTATTTGACCTAAAGTGGTCCTCAGATCCCATGGCATAATAAC
GTTAGGCGTGGACTTAACTATACATTTACTTACACTTTCAAAGGTAAAAC
CTTCGGTCCCCTTCGAAGTGGCGCTGAGCCGAGCGCAAACACTACGCCAA
TTAAGTCAAGGTGGCGTTGCCAAGCATTGGATTGGTAGCCCCGGGAAATG
CTAAGCAATTTTCTGTATGCATGAATGTGCTCCAGAGTTAATCCCTTTCT
AAAAGGACATTGAACACTTTTGTCGTCCTTCATTGCCCTAGAGTGCCCTT
CCTAAAGACTGGGCGATTGAAGCAAACGACAGCAATGTACTGAAAACCTT
CCAATTGTGCCCATACGTAGAGATGCATGAAGATAACAAGCTTGCCGAAA
ATAGGGTTGATGCTAATGCAATAGCATTTCTGGTGATCTTATCTGACACA
ATGTTCTCCCACTAAAGACCTCTATATGTGTGGACACGAAAGGCAAATAC
AAGGCAGTGCACTTTCTAGGCGGAAATATCGATTTCAGGACTGTTTTACT
AGCGGACACAATTGTAGGGCAGCATTTTAATAGATGCTTACTGAGATGAG
AAGAAATTGGCAGGAGCTTTTCTAATTCAAAAGGCTCATTGTGATCCAAA
TTAACCTCAATACCTGAATATTGAATATTAAGCTTTTCACAAGTCACAGC
CATCTCGAACTCCAAGCCTTCTCTTTGTTACCGAGTATGTACCCTATATG
AAAACACGACCCAAATTGAAAATTGGGCTGAAAATATTCTTACCATTTTA
TCGATGATGATTTTGGGATCTCCGAAATAACCCAAACTAAAAATAAACGC
TTTAGACCCCCTCTCGTATTAGCGTTTCATGTCATACTGTGTACGTATAC
AAATGTCCGTAGTACAGTACGTAGGGCAGAGTAGTAAAGCGGTAGATACA
CTAAACAAAGGATCCACAAAGTGCTCACGAGTAAAGCTCCGAGCTCGCTG
TCTGCCGTGCTATCAGACTTGAAGTATACGTAGAAGCCTCGATAGCTTGC
ATAGGTAATTTGTATATCGATTACTGTGTGTGCTCATTGATGCTTTTTCT
TTTAGTATGGGATCGAAAAGAGGGAGGACGAGGACGACGAGGATGACGAC
GATGACGACGACGACGATTTCGGATCCAGCTCTAAGAAGCAAGGGGAGCC
CGACGATCCAGTTCTTCGTAAGTTCACTCAATCGCCCACTCAGATGGTGG
ACAGTCCAATCATCCGCATTTTCCCGCTTTTCAGAGGCCAAAGCCATGGC
AGAGCAACAATTGAACAATATCAAGGGCCAAGTGGGTGAAAAATGCAGCA
TCCAGTAACCGGACGATCCACTCTCGTCGCACTGACTCGGATCGCCTTTA
TGTCGTCGTGAATTCATGACTTTGCCTAGGATGCATTTCTTTACTTTGTT
CTTAGAAGAAACCACAACTCATTACTAAATATTCTCAAAAAGACGATGCT
TGCTACACATGCCATCTACCAACACTCTGACGGAGAACCACTACCATTCG
CCTCTCGCTAATATCCGCTACTCACTCTGTCCCGGTCTCGATGAACTCAT
GGTTTCAGCAGTCCGCGAAGCGTCGCACGCTCCACTCCAAAGAACTCCAG
AGAGCTCCAGATCTCTCTTTCGCTCTCTCATGGATTAGGACGATTAATAA
CGTTCATTGGGCCTGAGCTAAGCGTTCCTCCTGGCGACGAGTCGTGTTCC
AACCTGGGAACCCGGAGAGAGCACTTCTCGCTGGACCACTATCCCAACAG
TTGGAGCCGCTCAAAGCCCAGATTGGTTCGATTGGCAGAGGATCGGGGAG
GTTGGCCGCTGAGGACCAAGGTTTCGCGGAGGCTGCTGAAATTTCAAACA
CACTCATAGACACTGAAGCCAGATGGGGAATCCTTGTAGACAAAAAAACA
TCCGATATAATTGTTAAAGTATTTATTGACCGTCAAAAAAATACAATGAA
TACGAACATAATTATGATATATACTTTCGATCATTGCATCAACGGCAGAC
ACACTAGATTGAATGC
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Synonyms
The feature 'complexin' has the following synonyms
Synonym
Tk11422
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