maker-scaffold42_size484952-snap-gene-3.25-mRNA-1, maker-scaffold42_size484952-snap-gene-3.25-mRNA-1 (mRNA) Tigriopus kingsejongensis

Overview


Name	maker-scaffold42_size484952-snap-gene-3.25-mRNA-1
Unique Name	maker-scaffold42_size484952-snap-gene-3.25-mRNA-1
Type	mRNA
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold42_size484952	supercontig	scaffold42_size484952:476100..483829 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
retinoid x	maker-scaffold42_size484952-snap-gene-3.25	Tigriopus kingsejongensis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:exon:722	maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:exon:722	Tigriopus kingsejongensis	exon
maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:exon:723	maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:exon:723	Tigriopus kingsejongensis	exon
maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:exon:724	maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:exon:724	Tigriopus kingsejongensis	exon
maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:cds	maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:cds	Tigriopus kingsejongensis	exon
maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:cds	maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:cds-2019745	Tigriopus kingsejongensis	exon
maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:cds	maker-scaffold42_size484952-snap-gene-3.25-mRNA-1:cds-2019746	Tigriopus kingsejongensis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto2019747	auto2019747	Tigriopus kingsejongensis	polypeptide
Tk06368	Tk06368	Tigriopus kingsejongensis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at scaffold42_size484952:476100..483829+

protein sequence of Tk06368

>Tk06368 ID=Tk06368|Name=Tk06368|organism=Tigriopus kingsejongensis|type=polypeptide|length=895bp
MSGSAVTVTPAVSATAGAMGVTVFVSRPLAMNSTPPTACIKTPIRSKASF
EPSGDKMADAIDFDLMAHLGEEITRDNLPMGDSGPDLSEFMDEQTIMDLL
SQEFFNSKPNPHDTIIVSAEFRPTQTLPKCPICSNSAGKHTYYGARTCLS
CRGFFRRSVQNQHHPIFKCTGSGNCTIDSKSWKSCKFCRYQKCLQAGMKP
AYVQSQEQRKERILQRYGSKKSQPNQINGSMKLQMHAVMAGTFTVEEHQC
LFGWYQKWHDFGASKSLDYFCDHVGVFQAILESSYEGKPMSNSAFRSMTK
ADEYVIVSYYFNEEEIQNLHFDDRMTLIARNFAVLYGLLWGSFSTLDDPD
AQMQTYFDFCLRNAANNPRYHSLLDLWQNFVDNGKRVSPYHCGLIQRDSF
PDSLKYRQYINDTEKIGSVMASDNALDAILMIILNYICFYSTDFPDQLRE
GEKIKTKQNNYLALLHRYTTTMINFDTSPLEALITDQFIHDILSEDVIDP
CSGEDVQAWSTLSESTLSPKTEDESVSLRLCQVCGLHAGKHNYYGGQVCE
SCRAFFRRSVQNQSYPTYMCKASGACDIDSKSRRSCACCRYEKCLEAGMN
PKWIISDEERRVKREHKRAKVLKAKDVKRDKVLPISRGLDFEFTTEEELK
VMQIRNYAKTCKLNHMALTMAKDGGPLTVLWDVIFNKQNVPLKFLETVEN
REKALFQGISMGLEEMTEIDVEDRQTLVQENGSAFFALIMSLYSIPNNFK
KLMNDLTRTLEQMSRTNPNVRLTNVLDTLEVLKLSPGNHPTYETFYGNVS
QSNKTLSEAHRALVTKIQHAVGSFENNPPDEMIVCLVILNLVFRSHGAKL
HNKAKVERVQNNFAFMLYRYLKSRFAQKAGSKMAKALMLTTYTTE

mRNA from alignment at scaffold42_size484952:476100..483829+

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold42_size484952-snap-gene-3.25-mRNA-1 ID=maker-scaffold42_size484952-snap-gene-3.25-mRNA-1|Name=maker-scaffold42_size484952-snap-gene-3.25-mRNA-1|organism=Tigriopus kingsejongensis|type=mRNA|length=7730bp|location=Sequence derived from alignment at scaffold42_size484952:476100..483829+ (Tigriopus kingsejongensis)
ATGTCAGGTTCGGCCGTGACCGTGACCCCGGCGGTGTCTGCGACCGCTGG
AGCCATGGGCGTAACCGTGTTTGTGTCGAGACCATTAGCCATGAACTCGA
CTCCCCCCACGGCTTGCATCAAGACCCCCAGTGGGGTAACATCCCCCACA
CTGGAATCCGGGGGCGGCGAGAGAAGTCTTTTGTTATTGCCATCATCAGA
TTCGTTCTCAGGCAAACTTAATGGCATCCCTCCATTGGGCTCCAAAGGCC
CATAACTCCCACTACCCCTGCCACCCTCCATACTTGGACGCCTTTCGGTG
GTCACGAGACGGCCCCGGGTCCACGCCCAAACTCGCTCACTGTCCCACGG
ATGAGGTGAATTAACATAAAACTGGATAATAGTGGCGATGATCTGTGCTG
AAAATAGCCCAGCACAGCGTACTGTGGACACTTCTGCTGTATGGCTGCCT
TCCAAAGGAGCCACCAAAGAAGGTGACCGAGATGTGGAAGTAAAAAAGAT
AGGGCTCACTTTTTCACTCATGTGATTGCGTCAGGCTGGAAAATTCTGAA
GGGAATCCATACTTTTTTGACGTACTACGTAGTTGCGGGTTTTAAGAGCT
GATATATTAGTGTGTGTTATCGTTTATTTTACTTGGCACATGTGAATTCA
CTTAGATTGAAATACTAGTAAGGTGAACTGTGTAATATAAATCTAAAAGA
TATACATATACAATAATAATGGTATGTAAATGTACACACAGATACAGTGT
CAGATGGGATCTGTCATGATGCAAAGACTAGGACCTTTTATATCACATGG
AGTGTATGCTGTAGACAAGTTTAGATGGGGGCGGTCTTGGCTAGTATGTT
TGTCAACCGATGTCCCACATGAAACAGATCTATCTGTAAGTAGCCTCATT
AATAGCCAAAATGTAAAAATGTAACCTGTCCGTTAGGAAAAACACTTAAA
ATGTTGCTTGGTCTGTAAAATTTGGGGAAAATTTCCAAACCTAGGAACGC
TATTTGAAAACGAGAAAAAAATCCTGACAAATTTCAATATTTTTTTGAAA
AAAGTAATCGAGGATGAAACGATTTTTTATAACAATGTGAATAAAGGATA
AGAGCTACCCATTTCAAAGCAAGTTAACACTGCCTGACATTTGATTCGGC
TTTTTCAAACAAATGTTTTGCCGTTTTTAAGAACATTGATGGTAAAATTG
CCTTTTGGCTTGGGAGAAGTAGTTTAAAAATAAAACAAAATGTATTTGGG
CTGTGAAGTTTCTACCCTTTTCTGCAGTCTACTCTTTAAAAAACTCATCT
TGCTAATAAAATTTAGAGTTGCAGGCTGGATATTTTGGCACGATAAGAGA
ACCTTCCCTTGTCTTCTGCATGGGACAAACATCTTCATACATGCCTACAT
TTCTTTATAACATTCTTATAAAGATTTACATAGGTCCGAGCATGGCTTTG
AATGCTTTTATCCCATTTTACCCTTTGAAATTCATGCTTTATTTGGTCCT
CCCACGGACTAGATATAGCTTTAGGACGCGCTACAAAGATGTCACCAAAC
ATATACAATTACTTTCGTTCGCTAAGTGTTGACTCCCGGGCATGAACTTT
CTTAATATGTAGGAAAACACATTTACACACTCTCATCTGAATCGTATATT
CGCTAATTGCAAAGCGGGTTTTTCTTAGCACAATCTCAGCATTGCCGGCC
GAATCTCGCCACTCTGCTTTGGGCCATCTTGGCTGTTCAGCGTTGGACCA
ATTGGCAGGAATCAAGAGTTGGGCGCAGTGGGGCCATGATCAGTGAGGCT
TTCCTTTCCTCCCTTTCCGAAGAATTTGCGCTCAGCGTCAAGTCCCCTTT
TCGGTCACACAACCTCGGAGAGAGATTGGTGTCAGTCTCCGATGTCTTCT
GTAACCCACCATGCTCTTTTCATCGGGTCGGCATAGTATGGATTTGTTAT
CTTGTGAGCGACCAGTTGTGTTTTTGGGTAGATATGAATAGAATGGAATG
TCTCTCCAGCCATTTGACCACTGCGAAAACAAGATTTCTGTGGCTCGATT
ATGGGGCATTTGTGTCTCGTATATGTGCAAAACACGTTAGTAATTAATAG
GCATGCTGGATTTTAATCTTACTTTGAATTCCTTATCTTTCCGTACATAC
GTAACTGTCAAGATTCGCTTGGAAGCATATGTTGCTGAATCTACTAGTGT
ATTTACTTGCCATGAACATCGCAGTAATCAAGCTCGAACCAAACTAGTTC
CGAATCCTGTGAAGGTGAAGTGATATCTGCAACTGGGATGAGGTAGGCAA
CTATAATCTCTTGCTGTTTTGTGTACGGTTTAACAATGTATGCTTTAAAT
TTGAAACCGACGATTTCTTGTTGCGCTTGGACGTGTCACGATATTTTTCT
ACCAACTCAGCCCTTGTAAGTTTAAAAATAGAGGGCATTACGATAACGTT
AAACTGCGTGGTTTTGGTAAAATTCAACGGAGAGGGAATAAGTCAAAGGG
TGCAACTGTTTCAGAATTGATATTGGGCAGCGTTCGCAGACCGGGAAATA
ATCGTCCACCATTAGAGTGTGCAGTAGTGCATATATGACAGTTATGGGTC
AGAGTATACATGGATAATCAATCTCAGAGCTCACGCTCTTGACCACTTAG
CTCTCTGTCCCATGAAGAGGAGCTCGAATGGTGTTTGTAGGCCAGTGCAA
GGCTCAAACCTCACTCATTTCCCTCCGTTAGTTCGTAGCAAAGCCTCATT
TGAGCCAAGTGGAGACAAGATGGCAGACGCAATTGATTTTGATTTGATGG
CCCATTTGGGAGAGGAAATCACCCGTGACAACCTTCCCATGGGGGACTCT
GGTCCGGATTTGTCCGAGTTTATGGATGAGCAGACAATCATGGACCTGCT
ATCCCAAGAGTTCTTCAATTCCAAGCCGAACCCACACGACACTATCATCG
TCAGTGCTGAATTCCGTCCAACTCAGACGCTTCCCAAGTGCCCCATCTGC
TCAAATTCCGCCGGAAAGCACACTTATTATGGAGCCAGAACTTGCTTGAG
CTGTCGTGGGTTCTTCCGGAGATCCGTTCAAAACCAGCATCATCCCATTT
TCAAGTGCACAGGAAGTGGGAATTGCACTATCGATTCCAAATCTTGGAAA
AGCTGCAAGTTCTGCCGATACCAGAAGTGCCTTCAGGCCGGAATGAAGCC
CGCTTATGTCCAATCGCAAGAACAGCGGAAGGAGCGGATTCTTCAGCGCT
ACGGGTCCAAGAAGTCTCAGCCTAACCAAATCAACGGGTCCATGAAGCTC
CAGATGCATGCGGTCATGGCAGGAACTTTTACCGTGGAAGAGCACCAGTG
CCTTTTCGGCTGGTATCAGAAGTGGCACGATTTCGGGGCTTCGAAGTCCC
TGGACTACTTTTGTGATCACGTTGGAGTCTTTCAAGCCATTCTAGAGAGT
AGTTATGAGGGCAAACCGATGTCAAATTCGGCCTTCAGATCCATGACCAA
GGCCGATGAATATGTCATTGTGTCCTACTATTTCAACGAGGAAGAGATCC
AAAACCTCCATTTCGACGATCGAATGACATTGATCGCCAGAAATTTTGCC
GTATTGTATGGCTTACTTTGGGGCTCTTTTTCCACCTTGGACGATCCGGA
CGCCCAAATGCAGACCTATTTTGACTTCTGTCTAAGGAATGCCGCGAACA
ATCCGCGATATCACTCCTTGTTGGATTTGTGGCAAAACTTTGTTGACAAC
GGGAAGAGAGTCAGTCCCTATCATTGTGGGCTCATTCAAAGAGACTCATT
TCCAGACAGTTTGAAATATCGCCAATACATTAACGACACAGAGAAGATCG
GGTCGGTGATGGCCAGCGACAATGCTTTGGATGCAATCCTCATGATTATT
CTCAATTACATATGCTTTTACTCCACGGACTTTCCTGACCAGCTTCGAGA
AGGCGAGAAGATCAAGACCAAGCAAAACAACTATCTGGCTCTCTTGCATA
GATATGTTAAGTACAAATATCCAAAAACTAGTAGTGCCAAACTTCACGAG
GCCATGATGATAACCGTCAAAGCCAAAAGTGTCCACCAGTCACTGGACTT
TCTGGCTTCATGACCATTGTCCAAATTAAAACTTGTGTGGAAAACAAAAA
ATGAAAGTCAATTTCCAATTAATATCAGCGAAAGGACTGCTAATACCTAA
GTAAAATCATTAGCAGAGAACTTACATGACCCTCAAAACTCGAGCCCAAC
CATCTCATGGCACGCCCAGATCTCAAATCTGGTGTCACAACCCAAGCCAA
GGATTGGCCTCCGCCAGAAATTCTGACTATGTAAATCTGCTTAATGCTGA
TGGTATGTAAATGGCCAAAATCCGATTGGAGATTCTTATGCTAGGTGAAA
AACGAACCCGACAGAAAAATGGAAAAGACCAGGGCGTGCATTCAGCTTGT
GTTTAATAACTTTATGATAACTATTGCCCGCAGAGGCTGAGAGATGAGAT
GAATTTGCGAAACCCTTGCAAGTACATGCATTGAAGGCTGAACAAAATAA
ATACGTAGTAAAAGTTTGACACATTTCAAAAAGATACCCCAAAAGGTGGC
GCTTTTAAATAGTATTTGTCATTTTCCTGGAACAATCAAAATTACACGGC
AAGATACGTGGGAAGACCTTCGCAGCTCCTCAAACAGGTGCTTTATCTCA
GTACCTCAAATCCTTTCTTCAAAAGTCTATTCGGTTCCGGTAGGGGTTTA
GCAGTGGTCCGATCAGGAATGTCCTCAATCGAATTTACTTCGAATCGAGG
AGAGGTGTTACCAAATTACACTGTGGTCAAGAGATCCCATTCCGTTTCCC
ATAACCTTGCCAACAGCCGCCTTCATTCATTAACGAGTCCAATTTTTCTT
ACATAATGATAAGTCATTTGACTTTTCTTCAATCGCGAAAATCAAGGCCC
TAATTGTACCTTAAACGAAACGACATTATAGATTATTTTTAACGTTTTGC
CAATTTCTTTTCCAAAAAAACATAAAGTTTTAAACCTTTTTGGCCTGACA
AAACAAACTTTTTCATTCCGTGGTCTGTTTGTTTGTTTGGAAGGCCCTAG
GAATGATCAGTACAGTACAATCACTTCCCAGTTAGAAATCTCCGAAGAGA
CATATTCGACCTTAGGACTTTCTGAAAAATTTATTCTAATCCTTGGACCG
AGTTCAAGATAGTCATGGTTTGACCCAGAAGGGACAGGACTACCTTGGGA
TTCCAGTCCAGGGATATATTGGTGCCGTCGTGAATACTAGCCCACAGACG
GCAGGTTGCAGGGCAAAATGTCGCTAGATGACAGGGCGATTCCTCCGTCT
TTCCGCATAAGCGACAACTTTGGCCAGCCACTTGCCCTGACATTCCGTGG
TCTATTCATCATGTTTAAACGGATATGGTACGTATGTCAATAACGTCTGG
CCGGATTAAGCGTCAGTGCTAGTTATTATACATATATGTATAAGTACGGT
ATATATACATATGTATAAGCGCGATTTGAGTCGTTGTAATATGGACGTCG
TCACCAGGTAAATGCGAATAGGAAAATCGTTACAAGACGTCACAAAAACT
CGGTTAAAACGCATCGTGGCCTTAGCCAAACACCCAATCTTGTCAACAAA
TGGGTTCATATTTCTTCGAGGCAACTCATTTGCACGTTTAACAATCCTTC
CTCGACATTTTCAAATGGAGCTAGTTCTTAACAGTGTGGGCAATAAACGA
ATTTCTGACACATGCTTCAGAACAGCCGGAGTTGGCCCAAGTTAGCGTAC
TGCCCCGTCAGAACACGTAAGAGATGTTTGCAGAGGGAAAAAACCTGTTA
CAAAAGCAGGCCCAAGCAGAAGCTTATCTAGCGCTGAACGCACGCAGACA
CCTTGGATGAAGCTGCGGAGAATTTGAGGAAGGATCCAAACGAAAAACAA
CACAAGACTCAGGTATGGAACTAGAGTTGGACAACTTCAGCCCTCTTAGC
TTTATTGGGACCAACCAAGAATTAGCATTCGATGGGGAAAACATCTCTTT
AGTTTCATGATAAAATGATCTGACTCCATCTCCTGGTGATTTGAGCAAGC
TCATTCTCAAGGACTAAACCGCCAATCGCTGAGAAGGCCAAACCAATACA
AAAATATTAAAATATCAAAAGTAGGCCTGGCTGTTAATGAATTGAATGAG
TTTCGGGCACTCTCAAACCTGATGGAACATGTCCAGAGTTCCGAATTGGC
TTCCCCCGACCATCAATCATTCAATGAAACTGCCCTGATTGTTCTCATCT
TTTCGCCTTGGACTTTCAGGAACCAAGACCAATGAAAGTTTGAATTGAAC
ACACGCGTCAAGGCCTGGAGAAGCAGAAATTGGCATCAAATGTTGTTGAA
TACTCTAATTACGATGTTGCATTAAAGTTTAATATTTACTTGATTTCAGA
CGACGACAATGATCAACTTTGATACCTCACCGTTGGAGGCTCTGATAACA
GATCAGTTCATCCACGACATTCTCAGTGAAGATGTGATTGATCCCTGTTC
GGGGGAAGATGTCCAAGCCTGGTCAACCCTATCAGAATCAACCTTGTCGC
CCAAAACCGAAGATGAATCGGTATCATTAAGACTCTGTCAAGTCTGTGGA
TTGCACGCAGGAAAGCACAATTATTACGGCGGTCAAGTGTGCGAGAGTTG
TCGGGCATTCTTTCGCCGCTCGGTTCAAAACCAATCATATCCAACATATA
TGTGCAAAGCATCTGGTGCTTGTGATATCGATTCGAAATCAAGACGAAGT
TGTGCTTGCTGTCGTTACGAGAAGTGCCTTGAAGCCGGAATGAATCCCAA
GTGGATCATATCCGATGAAGAGCGACGAGTCAAACGTGAACACAAACGGG
CCAAGGTTTTAAAAGCCAAGGATGTAAAGCGTGACAAAGTTTTGCCAATC
AGTCGGGGGCTGGATTTCGAATTCACAACAGAGGAAGAGCTGAAAGTGAT
GCAGATCAGGAACTACGCCAAAACTTGCAAGCTGAATCATATGGCCCTTA
CCATGGCCAAGGATGGAGGTCCTTTGACCGTCCTCTGGGACGTCATTTTC
AATAAGCAAAACGTGCCACTGAAATTTTTGGAAACGGTCGAGAATCGGGA
GAAGGCTTTGTTTCAAGGAATTTCAATGGGTCTGGAAGAAATGACCGAGA
TAGACGTGGAAGACCGGCAAACACTCGTACAGGAAAATGGCTCCGCTTTC
TTCGCCCTCATCATGTCTTTGTACTCTATACCAAATAATTTCAAAAAGTT
AATGAACGATCTCACTCGCACCTTGGAGCAAATGAGTCGGACCAATCCGA
ATGTTAGACTCACCAACGTCTTGGACACTCTGGAGGTGCTCAAGCTCAGC
CCCGGCAACCACCCAACCTATGAAACCTTCTATGGCAATGTCTCTCAATC
CAACAAGACTTTGTCGGAAGCTCATCGCGCTTTAGTGACCAAGATACAGC
ACGCCGTTGGATCTTTTGAAAACAATCCTCCCGATGAAATGATTGTCTGC
CTGGTGATCTTGAATCTGGTCTTTAGAAGTCACGGAGCCAAGTTACATAA
CAAGGCCAAGGTGGAAAGGGTGCAGAACAACTTCGCCTTCATGCTTTATA
GATACCTCAAATCGAGATTCGCTCAGAAAGCCGGTTCGAAAATGGCCAAA
GCTCTCATGCTCACCACATATACAACCGAG

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