snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1, snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1 (mRNA) Tigriopus kingsejongensis

Overview


Name	snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1
Unique Name	snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1
Type	mRNA
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold1267_size51716	supercontig	scaffold1267_size51716:15441..18235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
matrix metalloproteinase-25-like	snap_masked-scaffold1267_size51716-processed-gene-0.1	Tigriopus kingsejongensis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1:exon:655	snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1:exon:655	Tigriopus kingsejongensis	exon
snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1:exon:656	snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1:exon:656	Tigriopus kingsejongensis	exon
snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1:cds	snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1:cds	Tigriopus kingsejongensis	exon
snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1:cds	snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1:cds-1962822	Tigriopus kingsejongensis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto1962823	auto1962823	Tigriopus kingsejongensis	polypeptide
Tk02837	Tk02837	Tigriopus kingsejongensis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at scaffold1267_size51716:15441..18235+

protein sequence of Tk02837

>Tk02837 ID=Tk02837|Name=Tk02837|organism=Tigriopus kingsejongensis|type=polypeptide|length=305bp
MMSNNHRTAVETFCSILLGLVIFPGVISAPSYLTDSHVAATRSINQRSRT
SRDTSSAVITQNRITYLAQFGYLPRSETESLVTDHQVRDALRNLQFMAGL
SVTGELDLDTLDLMGRPRCGVPDVTHSGYRNKRSVRNKRYSLQGQRWSKT
NLTWNLKKGPTLGLDHNLVRRELSYALELWARESSLTFQEVGPDDVADIG
VFFHRGFHGDGYQFDGSGSVLAHAFFPGSGRGGDVHFDDDEQWSEHRMNT
HDLTSVFAVAAHEFGHSLGLSHSGVEGSLMYPWYSGVPDDYNLPEDDRKA
VQILS

mRNA from alignment at scaffold1267_size51716:15441..18235+

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1 ID=snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1|Name=snap_masked-scaffold1267_size51716-processed-gene-0.1-mRNA-1|organism=Tigriopus kingsejongensis|type=mRNA|length=2795bp|location=Sequence derived from alignment at scaffold1267_size51716:15441..18235+ (Tigriopus kingsejongensis)
ATGATGTCGAACAACCATCGAACGGCAGTCGAGACCTTTTGCTCAATCTT
ACTCGGTCTAGTCATATTCCCGGGCGTGATTTCCGCCCCATCCTATCTCA
CAGACTCACATGTCGCTGCTACCCGATCCATAAATCAGCGCTCGAGGACA
TCCAGAGACACATCGAGTGCAGTCATCACGCAGAACCGAATCACATATCT
GGCCCAATTTGGGTACTTGCCTCGCTCGGAGACCGAGTCTCTGGTCACAG
ACCACCAGGTTAGAGATGCCTTGAGAAATCTCCAATTCATGGCGGGCCTC
AGCGTGACCGGGGAGCTTGACCTCGACACCCTTGACCTCATGGGTCGACC
TCGGTGCGGCGTGCCAGATGTCACGCACAGCGGATATCGGAATAAGCGAA
GTGTCAGAAACAAGCGCTACAGTCTCCAGGGTCAGAGGTGGTCCAAGACC
AACCTGACCTGGAACCTCAAGAAGGGTCCCACCCTTGGGTTGGACCACAA
CCTGGTGAGGCGCGAGCTCAGCTACGCCCTAGAGCTATGGGCCCGGGAGT
CCAGTCTCACCTTCCAGGAGGTCGGACCCGACGATGTGGCCGACATTGGG
GTGTTCTTCCACCGTGGCTTCCACGGCGACGGCTACCAGTTCGACGGCTC
GGGTTCAGTTCTGGCGCACGCCTTCTTCCCTGGCTCGGGCCGAGGTGGCG
ATGTGCACTTTGACGATGACGAGCAATGGTCAGAGCACCGGATGAACACC
CACGATCTGACCAGTGTGTTCGCAGTGGCAGCCCACGAGTTCGGACACTC
CCTGGGTCTGTCTCACTCGGGGGTGGAGGGCTCCCTCATGTATCCCTGGT
ACTCAGGAGTGCCGGACGACTACAATCTCCCAGAGGACGACCGCAAAGCC
GTCCAGATCTTGTACGGGGAGACNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGAAAAATCAAGCGATGGATGTTGTAACCGACCCTGAGCCA
GACATGGACAGTAGAAAAACCACGGTCCGCAATATGCGTTCAAAGTGTCG
ATGTTCATGTGTCCTGCAGTTCACATTCCGACGCGCAGTTAGCTGCGTTC
TTCATCGACCCCCGAGCTCGGTTTGCCTTCTGAGAAGGATGGTGAGAATG
ATCGAGGAAAATATCTGAGCCACGGCCTAAACAAATACTGAGAATGTATG
AAGAACGACTTCGCGGCACTCTCTCTCTCCCTCTTCAGATCGTGA

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