snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1, snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1 (mRNA) Tigriopus kingsejongensis

Overview
Namesnap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1
Unique Namesnap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1
TypemRNA
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold22_size673200supercontigscaffold22_size673200:489101..492241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
transcriptional repressor ctcfsnap_masked-scaffold22_size673200-processed-gene-5.2Tigriopus kingsejongensisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1397snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1397Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1398snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1398Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1399snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1399Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1400snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1400Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1401snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1401Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1402snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1402Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1403snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:exon:1403Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:three_prime_utrsnap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:three_prime_utrTigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cdssnap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cdsTigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cdssnap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cds-2019856Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cdssnap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cds-2019857Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cdssnap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cds-2019858Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cdssnap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cds-2019859Tigriopus kingsejongensisexon
snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cdssnap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1:cds-2019860Tigriopus kingsejongensisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto2019861auto2019861Tigriopus kingsejongensispolypeptide
Tk12704Tk12704Tigriopus kingsejongensispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of Tk12704

>Tk12704 ID=Tk12704|Name=Tk12704|organism=Tigriopus kingsejongensis|type=polypeptide|length=607bp
MTVVSEDAPETVPAPKAPSRASTRATAPSGATAENRVVLNAGGDQFQTVH
IVPSDTGSNEVSYVLIVQPPDGQEAKAGEAEDGEAGPSGVYDFDADDPGE
FDDDFEMDQAKGKVLKASTKRSQMVVQKHMCNYCNYTTPKRYLLSRHMKS
HSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCEACFTTSGEL
VRHVRYRHTHEKPHRCTECDYSSVELSKLKRHMRCHTGERPYQCPHCTYA
SPDTFKLKRHLRIHTGEKPYECDICHARFTQSNSLKAHRLIHTGDKPVFQ
CELCPTTCGRKTDLRLHVQKLHTSDRPMHCKMCGKSFPDRYTLKVHKKTH
EGEKCFKCDLCPYSSISQRHLESHMLIHTDQKPFQCDQCDQSFRQKQLLK
RHQNLYHNPNYVPPPPKEKTHECPECGRSFRHKGNLIRHMALHDPESTAQ
EKAIALKIGRQRKIQIVNGQAVEVFTGEDEDDEDEEDYEDEEDEPMEVVG
PESDVMAVQSQDGQHYVVLEVIQLPEGESEGAATTSSVAKKSSPPPAITQ
VPKSLEATIEAQTSQAKAPVPSGSSASKTGEIVKLEGDGGKNQDDVTNCF
GFDEDDD
back to top

mRNA from alignment at scaffold22_size673200:489101..492241-

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1 ID=snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1|Name=snap_masked-scaffold22_size673200-processed-gene-5.2-mRNA-1|organism=Tigriopus kingsejongensis|type=mRNA|length=3141bp|location=Sequence derived from alignment at scaffold22_size673200:489101..492241- (Tigriopus kingsejongensis)
GGAGGAGGAGGAGGAGGCCGCCGGCGGGCAGTACTTCGTGGACCAGGCCA
CGGGCCAGTACTACTACCAGTCCCAGGACGGCGAGACCATGACCGTGGTG
TCCGAGGACGCGCCGGAGACGGTGCCCGCACCCAAAGCGCCCAGCCGAGC
CAGCACGCGCGCCACGGCTCCGTCCGGGGCCACGGCCGAGAACCGGGTGG
TCCTGAATGCGGGCGGCGACCAGTTCCAGACGGTCCACATTGTGCCCTCG
GATACGGGCTCGAACGAGGTGTCCTACGTCCTCATCGTCCAGCCGCCCGA
CGGACAGGAGGCCAAGGCGGGCGAGGCCGAGGACGGCGAGGCCGGACCCT
CGGGCGTCTACGACTTTGACGCCGACGATCCGGGCGAGTTTGACGACGAC
TTCGAGATGGACCAGGCCAAAGGCAAAGTTCTCAAGGCCTCGACCAAGCG
ATCCCAAATGGTAATACATTGGGCTGAATGTCAGACTTCTGGAGGGCCCC
TCCAGGGGGACAATGGGCCATGGCTCAGCACGGTCCCGCTCCTCATCCGA
CTGCTACCTAGTTTCGGGCATGTTCATCCCACATCTTGAGCGGGACACTC
GTGGAACCTCGAATCCGGTGATTGAGGCGGCCGTCGCGGCATCCGAGGCT
GATGTCGTTGATTCGCGCCCTGTCGCTCTGTCTGGCTCTCTGGCCAGTCC
AAGGGTCGATGGGGCAAGCGGGGGAGGAAGTTTGAGTCGATGATTCGGTT
TGAACGTGGTCTGGCCCCTTTCATTTTAGGTGGTGCAGAAGCACATGTGC
AACTATTGCAACTATACCACGCCCAAGCGCTACTTACTCTCGCGCCACAT
GAAATCCCATTCCGAAGAACGGCCGCACAAATGTTCGGTTTGTGAAAGAG
GCTTCAAGACGCTGGCCTCACTCCAGAATCACGTCAACACTCACACAGGT
GATCCATGCACCCGTCCACCTGTTTTCCCATCGTCCCTGTTCTTGACTCC
CTCTTCCTGCTTGTATTAGGCACCAAACCTCACCGCTGCAAATTTTGCGA
GGCCTGCTTCACCACCTCCGGGGAGCTGGTCCGCCACGTCCGATATCGTC
ACACTCACGAAAAGCCCCATCGGTGTACGGAGTGCGATTATTCGAGTGTC
GAGCTGAGTAAGCTGAAGCGACACATGAGGTGAGGCGTGTGGAGCCCCTG
GGTTGGCTAACCTCGAGTCCCCGAAACACTTTCCCTCTTTTTAGGTGTCA
CACGGGAGAACGACCCTATCAGTGTCCTCATTGTACATATGCTAGTCCCG
ATACGTTCAAACTCAAGAGGCATTTACGGATCCACACCGGAGAGAAACCC
TACGAATGCGACATATGTCACGCCAGGTTCACCCAGAGCAACTCCCTGAA
AGCGCACCGTCTCATCCACACGGGTGACAAACCCGTGTTTCAGTGCGAGC
TATGTCCGACCACTTGCGGGCGAAAGACGGACTTGCGTCTCCACGTTCAA
AAGCTTCACACCTCGGACCGACCCATGCACTGCAAGATGTGTGGGAAATC
ATTTCCCGATCGATACACACTGAAGGTGAGCTCATTTTTGTCTCCCTTCG
CCACCACTTGCTCTTCTAGTATTTGAACGAACAAGCCTTCTTTTTGGTTG
GAAAGGCAGAAGTTGTATCAATCAACCTCGCTTCTTGGTTTCAGGTGCAC
AAGAAAACGCACGAAGGAGAGAAGTGCTTCAAGTGTGATCTCTGTCCCTA
TTCGTCGATCTCTCAGCGGCATTTGGAATCTCACATGCTGATCCACACCG
ACCAAAAGCCTTTCCAATGCGATCAGTGCGATCAAAGCTTCAGACAGAAA
CAGCTTCTCAAGCGTCATCAAAACCTGTATCACAATCCCAATTACGTTCC
GCCGCCCCCCAAGGTAACCTTGCTAGCCCCGGTTTTCTTTGGGTATGCCT
ACCACGAGACCCATTAGTCAACGAAGAAGTCGGTTGGCCGACTCGCCCAT
TCGGTACACCCCATGTTCCCTAATATCGATTTCAATGTCTCTTTAGGAAA
AGACCCACGAGTGTCCGGAGTGTGGTCGCTCTTTCCGGCATAAGGGGAAC
TTGATCCGTCACATGGCGCTCCACGACCCGGAGTCCACAGCCCAAGAGAA
GGCCATTGCCTTGAAGATTGGTCGCCAGCGCAAGATTCAGATTGTCAACG
GGCAAGCGGTCGAAGTCTTCACGGGCGAGGACGAAGACGACGAGGATGAG
GAAGATTACGAGGACGAGGAGGACGAACCCATGGAGGTCGTTGGTCCCGA
GTCAGACGTGATGGCTGTGCAAAGCCAAGATGGCCAACACTACGTGGTGT
TAGAAGTCATTCAATTGCCCGAGGGCGAGTCCGAAGGAGCTGCCACCACA
TCCAGTGTGGCCAAGAAGAGCTCTCCACCGCCCGCCATCACTCAAGTCCC
CAAATCTCTCGAAGCCACCATTGAGGCTCAAACCAGCCAAGCCAAAGCCC
CAGTGCCCTCAGGTATGTGTCTACTTTGGTCAGAACAGGGGATGAAAGTT
GTTCACTCTTCATCCAGACGGTAATGGGATTAACGAGGCTTTAACTGAAG
AATAGTGGGGGATGGATGCAGCTTTTAGAGAGATGGTTTTTTTTCTTCCT
TGTTTCGAAGGCATTTTCGGTAACGCCACACCACATTATCGGTACACCAT
CGCTAGCGGGCACATTAGGGATTGGCAACGAAGGGGTGGTGAGTGTCGAG
AAGCATCGGTGACTGATATCAAATGGGGTACAAAAAACTCCTCGCTCTTT
AAAGGAACATTTTTAAACGTTATCACTTTGGGCGCCTGATTTCTCGATGA
ATGCCATTTGATGCCTCTCAATGAGTACATGTTTCCTTTTAAGGTTCTTC
AGCGTCGAAGACGGGCGAAATTGTCAAACTGGAAGGAGACGGTGGCAAGA
ATCAAGATGATGTGACCAATTGCTTTGGTTTCGATGAGGATGATGACTGA
GTGGAGTGAGGAATAATGATGGCGGGAGCTGAAAAATCAGCTCTTGTTTG
TTTACAACAAGATGATGGAAGGAGGGAATGAGTATTGTAATAAAATGTTA
CCCCTTCCGACATTTCAATAAAGGCAAAATCCAAAACTTGG
back to top
Add to Basket