snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1, snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1 (mRNA) Tigriopus kingsejongensis

Overview
Namesnap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1
Unique Namesnap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1
TypemRNA
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold235_size242898supercontigscaffold235_size242898:99349..103659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
thyroid hormone receptor alpha asnap_masked-scaffold235_size242898-processed-gene-1.1Tigriopus kingsejongensisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1:exon:102snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1:exon:102Tigriopus kingsejongensisexon
snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1:exon:103snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1:exon:103Tigriopus kingsejongensisexon
snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1:cdssnap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1:cdsTigriopus kingsejongensisexon
snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1:cdssnap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1:cds-1993908Tigriopus kingsejongensisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto1993909auto1993909Tigriopus kingsejongensispolypeptide
Tk06562Tk06562Tigriopus kingsejongensispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of Tk06562

>Tk06562 ID=Tk06562|Name=Tk06562|organism=Tigriopus kingsejongensis|type=polypeptide|length=612bp
MSGKEPKRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKF
NCKFGGKCEITEKNRKCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIR
QNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGK
WDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVAS
LFRNFAQDNTEFSELPTEDQETLLKANTTKFLSLIIANYLTLPFPDGINW
LLLGQIIPGLEDLALNKSSPAFLCFSIGLAIGEDFPGLISLLEEVDMFQF
NCSNIGSIALGILFHIGDQSNVPLEEPTHVSTSQNEIFHVLESLVDVEPF
MNCLQQISKKVIPFWFPEVTQDSHSLLPVSSLAFEDSYERLQTDLQYFAE
VNDIVNYGEDLMMECIMFNFDVPLTKRFYGMIAQIWAQRFFYVLRKTTNI
KEKPVEVQNQILARMVLPLIALVQARMEALPVVEEQIRFCCGTSDIEEYI
DKYRDIVPDKSYQLMKIRSMNKNYALYDKETQDDLVALNKELMPMVADET
LFRIIILFTMAACVLDPANDNSDIYVKHFKYQLESKGHHDPDLSLAICVQ
NTKKLTKVMSKP
back to top

mRNA from alignment at scaffold235_size242898:99349..103659+

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1 ID=snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1|Name=snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1|organism=Tigriopus kingsejongensis|type=mRNA|length=4311bp|location=Sequence derived from alignment at scaffold235_size242898:99349..103659+ (Tigriopus kingsejongensis)
ATGTCGGGAAAGGAACCAAAACGAAGCAGAGTTTGCTCCATTTGTGGAGC
CAATTCTGAGACCTACCACTTGAATTATGGGGTAAGCAGCTGCTTTAGCT
GTAGAGCATTCTTCCGGAGAGCCCTGGAACGAACGAGGAACCCCAAGTTC
AACTGCAAGTTTGGTGGCAAGTGTGAAATCACCGAGAAGAACCGAAAGTG
CAGAAAATGCAGATTCGACAAATGCATCGGGCAAGGAATGAAGCGCGACC
TGGTCATGGACGACACCCAAAAAGTGCAACGTTTCCGAAAGCTCATCCGC
CAAAATCTTTTGGCTGATCCCGAGAAGGGTATGGTGGTCAAGTACAAGAA
GGCCTCGAAGAAGACGAGCTCCATGGACATGGAGCCAATGAGTAACGGTG
ATCAGACTTCAGAGGGGACAAATCCCAAGATCGAGTCGTGGAACGGCAAG
TGGGACAGGATCATTGCCGAAAACAGTTCCTTAGGGCATTTCAAAGACTC
GGTCATCCGATTCCATAGCTCCTCGGTGATTCCAGGGCTGGGTGGAACCC
GGGAGTTGGACAGAGAGTACTTGGTAGAGCACCTCAAGAAAGTTGCTTCT
CTATTCAGAAATTTTGCTCAAGACAACACCGAGTTTTCTGAATTGCCTAC
CGAGGATCAAGAGACCCTCCTGAAGGCGAACACCACCAAGTTTTTGAGCT
TGATCATTGCCAACTATCTGACTCTACCTTTCCCTGATGGAATCAACTGG
CTACTACTCGGACAGATCATTCCAGGCTTGGAAGATTTGGCCCTGAACAA
GTCCTCCCCAGCATTCCTTTGTTTCAGTATTGGACTAGCCATTGGCGAAG
ACTTTCCTGGCTTGATCTCACTCTTGGAGGAGGTAGACATGTTCCAATTC
AATTGCTCCAACATTGGATCAATCGCATTGGGCATTTTGTTTCACATTGG
GGACCAGAGCAATGTCCCCCTTGAGGAACCCACACATGTCAGCACATCAC
AAAACGAAATATTTCACGTCCTCGAGAGCCTAGTGGATGTGGAGCCTTTC
ATGAACTGCCTCCAGCAAATATCCAAGAAAGTCATACCCTTCTGGTTTCC
AGAAGTGACCCAGGATTCCCATTCGCTCTTACCAGTCAGCAGCCTTGCTT
TTGAAGACTCGTATGAGCGGCTTCAAACTGATCTCCAGTACTTCGCCGAG
GTCAACGATATTGTTAACTACGGCGAGGATCTCATGATGGAATGCATCAT
GTTCAACTTTGATGTCCCTCTCACCAAGCGGTTCTATGGGATGATAGCTC
AGATCTGGGCCCAGAGATTCTTTTACGTCCTCAGGAAAACAACGAATATC
AAGGAGAAACCAGTTGAAGTCCAGAACCAGATTCTTGCGCGAATGGTCCT
GCCTCTCATCGCATTGGTCCAAGCGCGAATGGAAGCCCTTCCAGTAGTCG
AGGAACAAATTCGATTTTGCTGCGGCACAAGTGACATCGAGGAATACATC
GACAAGTACCGAGATATTGTCCCCGACAAGAGCTATCAACTCATGAAGAT
CCGTAGCATGAACAAGAACTACGCCCTCTACGACAAGGAAACACAAGACG
ACCTGGTGGCACTTAACAAGGAGCTCATGCCAATGGTGGCAGACGAGACC
TTGTTCCGCATTATCATTCTCTTCACCATGGCCGCCTGTGTGCTGGACCC
AGCCAATGACAACTCCGACATCTACGTCAAGCACTTCAAGTATCAGCTCG
AATCGAAGGGGCACCACGATCCGGACCTGTCCCTCGCGATTTGCGTGCAG
AACACCAAGAAGCTGACGAAAGTCATGAGCAAAGTGTGTGGAATGTCCTA
ACTACACTACTACTTCAATTCGGTGTTTAGCGCGCACTTTGTTTTTGGGC
ACTACCTCAAATGTGAAACCATCCTGCTCACATCTGTCGATACACAGTAA
CAGGTCTACGGTAGTTCTAGTTGTTATTCAATTCAGGGTGCACCCTATAT
TTTAGTGTCGTGAGAAAAGAAACATAGCTATCTATCTATAAATCTATATA
TAATGGAAGTATGGAAATAAATATACGTTCCCAAGATCTCTGCTACACTC
TTTGCAATCCTCATCATCTACAAGTTACATAGAACAGAGGCGATATGTCA
GCTAATATCATTAAGTATGCTTTGGGTCGATTTACTCCGTATCATCGTAG
TACCAATCTTGATCAATTGCTGTTTCAGTCATCTTGCCTGAATCTTGGTT
TGCCACGCACACTAAGAAAGAAGTCTCAATCAGATGAAACTCTCTGAGGT
GAGAAAGACCTCATCGCAGTGAAACACCCTTCGAATCCCTCGATACTAAG
GGAAATAAGACGGCCTTGCGGATAGAGCTTCCCTCTGATGGGGGTTTGCC
CGTTCCCTACCGAATACCTAAGTTTCACCATAAATTATGTTAAGGGTGGT
TAGATTTTTTGAGAAAGGAGTACAAATTACCCTAATTATGCTTGAGTTTG
TACAATGTCCGTACAAATATTTTTATTTCTTATGTCTGCTATAACCGTGA
CCCCGTTAGGTATTGGCACTTCTCACAGCCAATCCCACTATATGTGCAGT
ACATGATAGTACTTGTACCGAGTGCGAACGCAAAACTTTCCGTTGTGCCA
AGTGAATTTGTGACATCAATGTTTGCTTAAGGGTGCATTAGTGTAAGTTT
CATGAAACTTGCGAATCTCATACCGGTTGGTGATTGGTAACTTTTTTTTA
TTGCCTCTTAAATCTAGTGGCAAAATCCCAAAAAAGGTAGAATCTTTGAC
AGAATACTTGGAATAATCGACAGCCAAAATCGGCTTGAGCTTGATTCAAT
CCATGGTCAAAAAAGCCAAAGGTGTTAATAACCAACATATCATTATCAAA
TGTATCATGTTAGACCTGAAGGGTCTTTTGAGAGAAATATGAGCTACTAG
TTATGATTGCGACTCTCATGGTCTAGGAATATCGGGAGACACTGTATAGG
TGCGGCCAAATCTTGAGGAAGGGTCCCTTCTGGTTCCCCACAAATCAAAG
TAGTGATTGGAACTGGATTGCAGGGGCTGCACGCTGACTCGCTAAATGTT
ATGTTTGGTGTGCGTAGTTCTTTATTTCAATCATAACTGCTTCGTCAATC
CGTCTCCTGGAGTAATGTCACCAGGAGGCGATTTTCGAGCAAGAGCGTCT
AATTAGTAAAAGCTCACTGCATTGGCAGAAGTACATTACAATTCCTCCCC
TCCCCTGAGCGTCAGCAGGGATGTGAGGAATGTTATGACTAGGGCTGTAA
AAACCTGGAAAACACTGTTTGCTGCCTTTTTCGTTTTTTTTTGCTGGAAG
TAATCTTAAATGCTGGAAATAGCCTTAAATGCTGGAAATCTATTTTTTTT
CTGGAATTAAAAATAAAATATCGGTATATGCCTGACTGTAAATGCTTCAA
CATTGGCAAAAAACTTAAAGCTGGAGTCCAAATTACTTGGAGAAGAAAAT
GGGTTCAAGCCAGATTTCATCAAAATTCAGCGTGGCTTTTTTGTATAGTT
TTATCCGCTTCCAACGTTTCAAAAAGTGGCTAATCCTAGCAAGGGTGTAT
TTTTGGCTCGTTTCCGATTCACACCATTGTTAACAGATTTGTTGGATTTA
GACTGTCGGATCCTGAAATTGTGGAACGAAATGTGATTGTGACATTTACA
AAGCTATCAAATAAAGTGAATTTAAAAAGAGGAAGTTTTTAAAAAGAATT
TAAAACCAATAGTTGGAGAGAAAACGTATTGTTACTGTAAAAATTCAAAC
ATTTGTCTAATTTTTTTATCTTCTTGTTTATCTTCATTGCTGCGTGTCGA
ATTATCGGTCACTTATGAAAATACTGCTCGTTCGCATCAGATTCTATGGC
GTTTGATCTTTTGCCTTCAAATATCAATTATTATTGTATTGAAGCCCGCA
AATAGTTTTCCTTTTCATTCTGTTTTCTCGACTGCATTACGTTTACTAAC
GTTTATTAAAATCTGCATTTTGACATTTGAAGTAGTTCAAATTATTGTGA
AATTTTTCTTTTACATATGTTTTTGGCAGTTTTTCGTGACTTCCTTCGTA
ACCTAATGGATGAATTTCCTCCATTGGGACTGTTTATTTCTTTTAGGCAT
TTATTAGATTTTTTGCGACTCCTCAGATTTCAGGCTTTTTTATTTGCTGT
AAATTTGGCTTTTTCACTCTTTTTTGCTGGTTTTATTTGCTGGAAACCTC
ACTGTCTTCTGTTTCCAGCGCTTTTTTTTGGCAATGTTTACTGTTTTTTT
TACAGCCCTAG
back to top
Add to Basket