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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 90..105 score: 58.29 coord: 74..90 score: 59.38 coord: 123..131 score: 67.83 coord: 131..139 score: 59.82 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | c4gold | coord: 71..142 e-value: 2.2E-38 score: 143.5 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 73..141 e-value: 7.3E-32 score: 109.5 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 74..100 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 71..146 score: 19.453 |
IPR001723 | Nuclear hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 605..620 score: 27.64 coord: 135..145 score: 44.53 coord: 667..684 score: 28.77 coord: 536..552 score: 42.69 |
IPR001728 | Thyroid hormone receptor | PRINTS | PR00546 | THYROIDHORMR | coord: 512..533 score: 36.36 coord: 605..627 score: 37.18 coord: 538..557 score: 45.0 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | SMART | SM00430 | holi | coord: 514..679 e-value: 9.9E-18 score: 74.9 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | PFAM | PF00104 | Hormone_recep | coord: 518..684 e-value: 1.7E-14 score: 53.8 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | PROSITE | PS51843 | NR_LBD | coord: 461..708 score: 35.216 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 66..157 e-value: 4.7E-33 score: 115.1 |
None | No IPR available | GENE3D | 1.10.565.10 | | coord: 446..710 e-value: 1.1E-76 score: 259.5 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 406..424 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 406..443 |
None | No IPR available | PANTHER | PTHR24082:SF324 | NUCLEAR HORMONE RECEPTOR HR3-RELATED | coord: 57..690 |
None | No IPR available | PANTHER | PTHR24082 | NUCLEAR HORMONE RECEPTOR | coord: 57..690 |
None | No IPR available | CDD | cd06968 | NR_DBD_ROR | coord: 67..161 e-value: 2.57001E-67 score: 213.935 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 71..156 |
IPR035500 | Nuclear hormone receptor-like domain superfamily | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 464..707 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk00449 ID=Tk00449|Name=Tk00449|organism=Tigriopus kingsejongensis|type=polypeptide|length=713bp MRMTGPIQPDSFLSGSNHRHAVTHHGHHSAVFMVDQNGNPPERQSPVCFA SSVCTPTNARPSVPLSAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRR SQSSVINYQCPRQKNCTVDRVNRNRCQYCRLQKCLNLGMSRDAVKFGRMS KKQREKVEDEVRYHKEINSQQLQQQQQQQQQASAGLISRSHTNSGSSPDT TGSVFDQPQPSSTDHLISYNPDYTNPASTYSTFQSLSACSAPAVSAASGT APGTPVSAGHTPTSVSGNGSSAEWADYGNVDSTTSSFETPASRGANEISS PGAVATVNSRTSGSASTVSNGGGGGGDSLSAGLKHLRTNNNHSPGGRMGL MGLHGVNPGGGLGLLGSVQHTIKQEIVGSNFQSHGGGSILGGHDLMNSGG GFVDSTTFPASSSSNNNHTRHSPSSLVGGGRADNHGLGAHPPPPNELFLL QEELQNDPERISALLTSSIFEAHTRTSLLSEDIIQERWKNGVDQSKVFAF KSMSQDELWLQCAQGLTSIITQIIEFAKMVPGFMKFPQDDQIVLLKGGVF ELAIIRMSRYYDTSQSAVLFSDMMLPMDAFTVNRDTTEMRLANRIFDFAQ DLAAMQLSEEALALYSAYILLQDDRPGLRNSDEVSKLNNAVLNTLQREIT HRPPLVAVKGDVSIINKLMTKRHTLREISYMHLDALNKFRSNGGGQLDFP ALHRELFPSGTEA back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
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