Tk00449, Tk00449 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk00449
Unique NameTk00449
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length713
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 90..105
score: 58.29
coord: 74..90
score: 59.38
coord: 123..131
score: 67.83
coord: 131..139
score: 59.82
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 71..142
e-value: 2.2E-38
score: 143.5
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 73..141
e-value: 7.3E-32
score: 109.5
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 74..100
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 71..146
score: 19.453
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 605..620
score: 27.64
coord: 135..145
score: 44.53
coord: 667..684
score: 28.77
coord: 536..552
score: 42.69
IPR001728Thyroid hormone receptorPRINTSPR00546THYROIDHORMRcoord: 512..533
score: 36.36
coord: 605..627
score: 37.18
coord: 538..557
score: 45.0
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 514..679
e-value: 9.9E-18
score: 74.9
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 518..684
e-value: 1.7E-14
score: 53.8
IPR000536Nuclear hormone receptor, ligand-binding domainPROSITEPS51843NR_LBDcoord: 461..708
score: 35.216
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 66..157
e-value: 4.7E-33
score: 115.1
NoneNo IPR availableGENE3D1.10.565.10coord: 446..710
e-value: 1.1E-76
score: 259.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..424
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..443
NoneNo IPR availablePANTHERPTHR24082:SF324NUCLEAR HORMONE RECEPTOR HR3-RELATEDcoord: 57..690
NoneNo IPR availablePANTHERPTHR24082NUCLEAR HORMONE RECEPTORcoord: 57..690
NoneNo IPR availableCDDcd06968NR_DBD_RORcoord: 67..161
e-value: 2.57001E-67
score: 213.935
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 71..156
IPR035500Nuclear hormone receptor-like domain superfamilySUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 464..707

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1331_size47282-snap-gene-0.8-mRNA-1maker-scaffold1331_size47282-snap-gene-0.8-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk00449 ID=Tk00449|Name=Tk00449|organism=Tigriopus kingsejongensis|type=polypeptide|length=713bp
MRMTGPIQPDSFLSGSNHRHAVTHHGHHSAVFMVDQNGNPPERQSPVCFA
SSVCTPTNARPSVPLSAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRR
SQSSVINYQCPRQKNCTVDRVNRNRCQYCRLQKCLNLGMSRDAVKFGRMS
KKQREKVEDEVRYHKEINSQQLQQQQQQQQQASAGLISRSHTNSGSSPDT
TGSVFDQPQPSSTDHLISYNPDYTNPASTYSTFQSLSACSAPAVSAASGT
APGTPVSAGHTPTSVSGNGSSAEWADYGNVDSTTSSFETPASRGANEISS
PGAVATVNSRTSGSASTVSNGGGGGGDSLSAGLKHLRTNNNHSPGGRMGL
MGLHGVNPGGGLGLLGSVQHTIKQEIVGSNFQSHGGGSILGGHDLMNSGG
GFVDSTTFPASSSSNNNHTRHSPSSLVGGGRADNHGLGAHPPPPNELFLL
QEELQNDPERISALLTSSIFEAHTRTSLLSEDIIQERWKNGVDQSKVFAF
KSMSQDELWLQCAQGLTSIITQIIEFAKMVPGFMKFPQDDQIVLLKGGVF
ELAIIRMSRYYDTSQSAVLFSDMMLPMDAFTVNRDTTEMRLANRIFDFAQ
DLAAMQLSEEALALYSAYILLQDDRPGLRNSDEVSKLNNAVLNTLQREIT
HRPPLVAVKGDVSIINKLMTKRHTLREISYMHLDALNKFRSNGGGQLDFP
ALHRELFPSGTEA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR001723Nuclear_hrmn_rcpt
IPR001728ThyrH_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
IPR035500NHR_like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
GO:0003677DNA binding
GO:0003707steroid hormone receptor activity
GO:0004887thyroid hormone receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
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