Tk02839, Tk02839 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk02839
Unique NameTk02839
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length481
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 241..258
score: 83.65
coord: 200..218
score: 86.22
coord: 258..271
score: 94.9
coord: 271..284
score: 95.85
coord: 219..239
score: 85.35
IPR000558Histone H2BSMARTSM00427h2b3coord: 190..286
e-value: 4.3E-75
score: 265.5
coord: 45..141
e-value: 7.7E-44
score: 161.6
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 170..288
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 25..116
IPR000558Histone H2BPROSITEPS00357HISTONE_H2Bcoord: 255..277
IPR009072Histone-foldGENE3D1.10.20.10coord: 17..127
e-value: 3.7E-45
score: 155.0
coord: 162..288
e-value: 7.7E-65
score: 218.6
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 28..114
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 173..288
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 24..114
e-value: 1.9E-21
score: 76.7
coord: 169..263
e-value: 7.6E-24
score: 84.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..192
NoneNo IPR availablePANTHERPTHR23428:SF173HISTONE H2B-RELATEDcoord: 25..116
NoneNo IPR availablePANTHERPTHR23428:SF173HISTONE H2B-RELATEDcoord: 170..288
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 364..386
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..363
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 393..411
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 387..392
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 443..453
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 454..475
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 417..442
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 412..416
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 476..481
NoneNo IPR availableTMHMMTMhelixcoord: 422..444
NoneNo IPR availableTMHMMTMhelixcoord: 454..476
NoneNo IPR availableTMHMMTMhelixcoord: 363..385
NoneNo IPR availableTMHMMTMhelixcoord: 395..417

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1017_size70709-snap-gene-0.11-mRNA-1maker-scaffold1017_size70709-snap-gene-0.11-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk02839 ID=Tk02839|Name=Tk02839|organism=Tigriopus kingsejongensis|type=polypeptide|length=481bp
MEGTFKQHYHSCIDTQPNLTMPPKTSGKAAKKAGKAQKNIAKGDKKKSRK
RKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAH
YNKRSTITSREIQTXPGLARARRLKRAGCCAGRSTGVSDSTFPYIMEGTF
KQHYHSCIDTQPNLTMPPKTSGKAAKKAGKAQKNIAKGDKKKSRKRKESY
AIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRS
TITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKKDPLTTESVEGF
ALALQGIDHIHGGDGLPLGVFGVGDGITDDVLKEHLEDTSGLLVDEAGDA
LHTSTASQTTDGGLGVFLAGAAFLTAGFFLGVLGFLAAAVTGFLVTVFLA
GVFFLGVLAFFSTVIFLMAVFFLGVLAFLGLTTLVFSTLTAVGILKEPEA
PVPLGWVSFFFSTRDLTAFLMKWAFLATSTL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
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