Tk02970, Tk02970 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk02970
Unique NameTk02970
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length297
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilyGENE3D2.70.170.10coord: 19..247
e-value: 3.4E-48
score: 166.0
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilySUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 25..238
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainPFAMPF02931Neur_chan_LBDcoord: 26..238
e-value: 1.9E-31
score: 109.1
NoneNo IPR availablePANTHERPTHR18945:SF577NICOTINIC ACETYLCHOLINE RECEPTOR ALPHA7, ISOFORM Ecoord: 27..238
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..297
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..24
score: 0.537
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.761
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 27..238

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1347_size46067-snap-gene-0.11-mRNA-1maker-scaffold1347_size46067-snap-gene-0.11-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk02970 ID=Tk02970|Name=Tk02970|organism=Tigriopus kingsejongensis|type=polypeptide|length=297bp
MQALLLVSIALASGIQAFPDRASATTKLREGLLSNYDEATQPSSTSLNGV
TQVDFGLNALWLELDDRGILCGSVWLKMKWNDERLSWNANNVTGIPENFH
VAPSQIWTPDISLFNRFDSGAPMFPEKTKGFSGNSIVMANGDVILIPSVG
IQAICEDVNLADRWGEQNCTLKYGSWTYSGYKLDMGMYDGHDQVDLSMYQ
KSSPLEIKSSKVVRREKTYDCCPEPYISMEIHLTVQRRFVQTPRGLFRNP
HLGVSGSTLSTLKAFSSLNKMTVLAAGLCFKKFRIRFARSSRLALED
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036734Neur_chan_lig-bd_sf
IPR006202Neur_chan_lig-bd
IPR006201Neur_channel
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
GO:0034220ion transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005230extracellular ligand-gated ion channel activity
GO:0004888transmembrane signaling receptor activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
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