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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR002119 | Histone H2A | PRINTS | PR00620 | HISTONEH2A | coord: 57..70 score: 89.46 coord: 71..85 score: 73.33 coord: 99..117 score: 78.65 coord: 42..57 score: 85.3 coord: 13..35 score: 73.79 |
IPR002119 | Histone H2A | SMART | SM00414 | h2a4 | coord: 2..122 e-value: 3.4E-77 score: 272.4 |
IPR002119 | Histone H2A | CDD | cd00074 | H2A | coord: 7..119 e-value: 7.4323E-76 score: 228.759 |
None | No IPR available | GENE3D | 1.10.3590.10 | | coord: 229..300 e-value: 9.7E-9 score: 36.6 |
None | No IPR available | GENE3D | 2.60.470.10 | | coord: 301..348 e-value: 9.7E-9 score: 36.6 coord: 206..228 e-value: 9.7E-9 score: 36.6 |
None | No IPR available | GENE3D | 1.10.287.770 | | coord: 184..205 e-value: 9.7E-9 score: 36.6 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..21 |
None | No IPR available | PANTHER | PTHR23430:SF66 | HISTONE H2A | coord: 1..122 |
None | No IPR available | PANTHER | PTHR23430 | HISTONE H2A | coord: 1..122 |
None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 1..175 |
None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 176..198 |
None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 199..394 |
None | No IPR available | TMHMM | TMhelix | | coord: 176..198 |
IPR001873 | Epithelial sodium channel | PFAM | PF00858 | ASC | coord: 155..348 e-value: 1.4E-11 score: 44.0 |
IPR007125 | Histone H2A/H2B/H3 | PFAM | PF00125 | Histone | coord: 9..88 e-value: 1.4E-14 score: 54.5 |
IPR009072 | Histone-fold | GENE3D | 1.10.20.10 | | coord: 2..127 e-value: 5.4E-62 score: 209.2 |
IPR009072 | Histone-fold | SUPERFAMILY | 47113 | Histone-fold | coord: 15..119 |
IPR032454 | Histone H2A, C-terminal domain | PFAM | PF16211 | Histone_H2A_C | coord: 91..122 e-value: 9.7E-19 score: 66.7 |
IPR032458 | Histone H2A conserved site | PROSITE | PS00046 | HISTONE_H2A | coord: 21..27 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk03153 ID=Tk03153|Name=Tk03153|organism=Tigriopus kingsejongensis|type=polypeptide|length=394bp MSARGKGGKAKEPSKSRSSRAGLQFPVGRIHRLLRKGSYAERVGAGAPVY LAAVMEYLAAEVLELAGNAATDNKKARIVPRHLQLAIRNDEELNKLLQGV TIAGGGVLPNIQAVLLPKKTESDRILKKIEMQTKNLKKKTESLISIYQQW VWKVCDEISIHGFIWHNRTMNPGIRLSILAFTLVILFGLPTFLCYQVVKF TENQQINNDIEWESANRVKYPNITICHPRYFDLRLLAKYSISESTANYMT MVLGKGGSRTQEKRTYPELEAAMDLGEMELQETMRKYNMNIVELFQEVAV RCNDFIPYCDLHGSVYYSNGSDPDQITCCERLFQNRPIFTPAGTCFVSTA EIWEFYPFIFSSMKIWLDLMSNHTLGERLEEPLGYYDQPNLDLH back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term | Definition |
GO:0006814 | sodium ion transport |
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