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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001650 | Helicase, C-terminal | SMART | SM00490 | helicmild6 | coord: 258..339 e-value: 8.4E-29 score: 111.7 |
IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 231..339 e-value: 5.1E-25 score: 87.9 |
IPR001650 | Helicase, C-terminal | PROSITE | PS51194 | HELICASE_CTER | coord: 218..383 score: 18.944 |
IPR001650 | Helicase, C-terminal | CDD | cd00079 | HELICc | coord: 218..347 e-value: 2.0919E-37 score: 133.517 |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | SMART | SM00487 | ultradead3 | coord: 19..222 e-value: 3.3E-50 score: 182.8 |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | PROSITE | PS51192 | HELICASE_ATP_BIND_1 | coord: 31..207 score: 30.755 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 212..321 e-value: 6.8E-13 score: 50.8 |
None | No IPR available | GENE3D | 1.20.1090.10 | | coord: 469..669 e-value: 1.5E-32 score: 114.8 |
None | No IPR available | GENE3D | 3.40.50.1970 | | coord: 331..468 e-value: 5.7E-37 score: 128.9 |
None | No IPR available | GENE3D | 3.40.50.300 | | coord: 1..209 e-value: 1.7E-69 score: 235.8 |
None | No IPR available | PANTHER | PTHR24031 | RNA HELICASE | coord: 1..358 |
None | No IPR available | PANTHER | PTHR24031:SF279 | SUBFAMILY NOT NAMED | coord: 1..358 |
None | No IPR available | CDD | cd00268 | DEADc | coord: 3..208 e-value: 4.03642E-78 score: 245.472 |
None | No IPR available | SUPERFAMILY | 56796 | Dehydroquinate synthase-like | coord: 346..668 |
IPR011545 | DEAD/DEAH box helicase domain | PFAM | PF00270 | DEAD | coord: 24..194 e-value: 2.3E-46 score: 157.7 |
IPR001670 | Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA | PFAM | PF00465 | Fe-ADH | coord: 340..648 e-value: 2.2E-71 score: 240.5 |
IPR000629 | ATP-dependent RNA helicase DEAD-box, conserved site | PROSITE | PS00039 | DEAD_ATP_HELICASE | coord: 153..161 |
IPR014014 | RNA helicase, DEAD-box type, Q motif | PROSITE | PS51195 | Q_MOTIF | coord: 1..28 score: 7.603 |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 75..350 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk05239 ID=Tk05239|Name=Tk05239|organism=Tigriopus kingsejongensis|type=polypeptide|length=670bp MTFSALNLTPAVLNALPNRLSSPTKIQLQAIPAALAGNDLLAMAQTGSGK TLAFGLPLLQQIEKHPYAEKDNSSIQGVVLVPTRELAAQVTQALQEIATP MGINIVMLCGGIEPDAQIAELDAAPQLLVATPGRLLDFINQNLVTLKNVK HLVLDEADRLLEMGFWPDVQRIIAAMPAKRQTLLFSATLPAELESAAMAL LFKPVRIEAHQKNSVVEDIEERLYLVNKGSKAQALIALIKQHEWQQVLVF VSERNAADTLAKKLIKADVSVAALHGDKDQAARESTLADFKAGKITVLVS TDLLSRGIHIDALPVVINADLPPNAPVYIHRVGRTARAGENGLALSLVCH GVEPNPTKETLDKAVAIAKQENIDFILAVGGGSVVDGSKYVAAAANYAGD GWDILTGQYTIETALPIGAILTLPATGSESNPAAVITKAETQDKLPFMHP SVHPQFAVLDPDVMKTLPERQLVNGIADAWVHTCEQYITRPTGAMVQDGY AETLLRTLKTLGEQFDDRDNDAWRENLMWSANQALFGLIGCGVIHDWATH MIGHEFTALWHVDHARSLTIVQPSLLRNQIEYKRAKLEQMGRNVFGFSDS DDLAERTIDAIEAFYSKLGLETQFTAHGTDKETAINAVIEQLAKHGMTAL GENQAITLEKSREILENAIA back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term | Definition |
GO:0055114 | oxidation-reduction process |
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