Tk05482, Tk05482 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk05482
Unique NameTk05482
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length593
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 244..252
score: 65.67
coord: 252..260
score: 56.77
coord: 195..211
score: 49.44
coord: 211..226
score: 61.15
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 192..263
e-value: 3.4E-37
score: 139.6
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 194..261
e-value: 1.1E-29
score: 102.6
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 195..221
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 192..267
score: 19.89
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 256..266
score: 41.58
coord: 411..427
score: 30.17
coord: 390..411
score: 23.6
coord: 505..520
score: 26.61
coord: 559..576
score: 32.91
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 389..571
e-value: 1.3E-15
score: 67.9
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 384..571
e-value: 1.0E-13
score: 51.2
IPR000536Nuclear hormone receptor, ligand-binding domainPROSITEPS51843NR_LBDcoord: 349..593
score: 26.8
NoneNo IPR availableGENE3D1.10.565.10coord: 359..591
e-value: 5.6E-55
score: 188.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availablePANTHERPTHR24080FAMILY NOT NAMEDcoord: 181..312
coord: 307..590
NoneNo IPR availableCDDcd07168NR_DBD_DHR4_likecoord: 189..276
e-value: 8.66111E-60
score: 191.619
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 193..274
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 185..296
e-value: 3.1E-34
score: 119.2
IPR035500Nuclear hormone receptor-like domain superfamilySUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 327..449
coord: 265..276
coord: 476..580

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold491_size156641-snap-gene-0.24-mRNA-1maker-scaffold491_size156641-snap-gene-0.24-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk05482 ID=Tk05482|Name=Tk05482|organism=Tigriopus kingsejongensis|type=polypeptide|length=593bp
LQHNSVSNSLSVSSSFMGVSPMSEKPPSIHESSLITKDHHHHHHHHRNTL
KWAKNCNLAVSTSLPTSVPAPESPPKYMVSPLYPNSMVVRQDEHHYEEHH
RLSEQAQKISSAVDGMLSLQSANTVARVSSSGSSMEKVFPVCPRSEGSSY
TRGIPINMEKLWDGDRTQLPANAKKLTEGTTQEGDDHIEEESLICMICED
KATGLHYGIITCEGCKGFFKRTVQNKRIYNCVADGHCEINKAQRNRCQYC
RFQKCLHKGMVLAAVREDRMPGGRNSGAVYNMYKVKYKKNKNKSSGKTGG
EISTKETHQFDMPCQNINILRAALTGNSQISTQYKHLFVNRDAEKNSFDH
MQLINNLIVCDDFEDIATLKNIGELLNQNTSDLQQKLCQIGDSIVYKLVQ
WTRRLPFYHELPVDVHTKLLTHKWHELLVLTTSAYQAIHGSTRMGTIRTD
GEKAELHQEVSTNLVTLQTCLTSMMGKPITMDQLRQDVGNMVEKITRVIA
LFRQCKLKMEEYVCLKVIAMVENSDSTSPSLVPIYNRYLKCLRAYATQHH
PLEPDRVDKLLVRLPEVRVAAALLLESKMFYVPFLLNSSIVGS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
IPR035500NHR_like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
GO:0003677DNA binding
GO:0003707steroid hormone receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Add to Basket