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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| IPR000504 | RNA recognition motif domain | SMART | SM00360 | rrm1_1 | coord: 11..80
e-value: 1.8E-20
score: 84.0
coord: 121..192
e-value: 2.8E-7
score: 40.2 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 12..78
e-value: 1.1E-17
score: 63.4
coord: 122..183
e-value: 1.0E-11
score: 44.3 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 120..194
score: 10.207 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 10..84
score: 17.268 |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | GENE3D | 3.30.70.330 | | coord: 119..195
e-value: 1.4E-25
score: 91.0 |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | GENE3D | 3.30.70.330 | | coord: 4..89
e-value: 4.5E-24
score: 86.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 179..246 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 179..200 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 217..231 |
| None | No IPR available | PANTHER | PTHR43933 | FAMILY NOT NAMED | coord: 7..245 |
| None | No IPR available | CDD | cd12601 | RRM2_SRSF1_like | coord: 120..193
e-value: 2.44229E-49
score: 154.563 |
| IPR034520 | SRSF1, RNA recognition motif 1 | CDD | cd12597 | RRM1_SRSF1 | coord: 11..81
e-value: 5.65419E-42
score: 135.678 |
| IPR035979 | RNA-binding domain superfamily | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 10..189 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk06014 ID=Tk06014|Name=Tk06014|organism=Tigriopus kingsejongensis|type=polypeptide|length=246bp
LANIMSSGETRIYVGNLPPDIRSKDIEDLFYKYGKISFVDLKNRRGPPFA
FVEFDDPRDADDAVYARDGYDYDGYKLRVEFPRGGGAGGFRGGRGSSGGP
GGAGGGRFGRGGPPTRRTNYRVVVTGLPPTGSWQDLKDHMREAGDVCYAD
VFKDGTGAVEYLKYEDMKYALKKLDDSRFKSHEGETSYVRVKEDGGSGAK
RSRSRSPSRSRSRSPRRSRASPTYSPLRRERSYSKSPSRSRSRSRS back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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