Tk06104, Tk06104 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk06104
Unique NameTk06104
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length341
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 235..256
e-value: 87.0
score: 7.9
coord: 259..285
e-value: 440.0
score: 2.2
coord: 211..232
e-value: 0.13
score: 21.4
NoneNo IPR availablePANTHERPTHR24373:SF251SUBFAMILY NOT NAMEDcoord: 170..261
coord: 222..296
coord: 256..307
NoneNo IPR availablePANTHERPTHR24373SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEINcoord: 170..261
coord: 222..296
coord: 256..307
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..341
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.896
NoneNo IPR availableSIGNALP_GRAM_NEGATIVESignalP-noTMSignalP-noTMcoord: 1..24
score: 0.704
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..24
score: 0.571
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 170..315
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 211..234
e-value: 0.0063
score: 25.7
coord: 259..282
e-value: 0.17
score: 21.0
coord: 170..186
e-value: 170.0
score: 3.1
coord: 235..258
e-value: 0.002
score: 27.4
coord: 187..210
e-value: 0.006
score: 25.8
IPR002861Reeler domainPFAMPF02014Reelercoord: 27..158
e-value: 2.0E-8
score: 34.9
IPR002861Reeler domainCDDcd08544Reelercoord: 30..166
e-value: 2.52657E-13
score: 63.9414
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 188..248
e-value: 3.4E-19
score: 68.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 164..186
score: 4.77
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 189..210
score: 7.057
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 213..234
score: 7.381
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 261..282
score: 6.973
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 237..258
score: 8.829
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 155..341
e-value: 2.0E-45
score: 156.5

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold691_size110934-snap-gene-0.33-mRNA-1maker-scaffold691_size110934-snap-gene-0.33-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk06104 ID=Tk06104|Name=Tk06104|organism=Tigriopus kingsejongensis|type=polypeptide|length=341bp
MSSVPTCLVLAACLALSLAFPNGAPNCKVTVPRHSAPPQDSFQPYELTAT
QTSDRNFFVEIGFENATEFFKGFLVMATNPEVAGIGHWVIPREFQEDVKV
LEQFNETDSQFYPCGVTHTNRIPKDVVQARFETKGGFHEHLDPEFMAIMV
KDMPTFWVDIPIDSVCILCDLRFNRIKRIPREAFNGLSNLDTLLLNNNHL
QKLHNGAFYGLSNLKYLYLYKNKITAIEEKVFQNLPKLEHLYLHHNYIKH
LEPNQFLGLNSIQRLFLHNNKLLSIPSDSFHGLEHVKRLRLDGNPLFCDC
QLSWLSSYIRANPKIQVTANCRDPEDQWVNLKTLDGSDLSC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR002861Reeler_dom
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
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