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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 601..621 |
None | No IPR available | GENE3D | 3.30.2350.10 | | coord: 150..339 e-value: 1.4E-44 score: 154.1 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 400..429 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 400..414 |
None | No IPR available | PANTHER | PTHR43994:SF2 | RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 2 | coord: 53..123 coord: 159..489 |
None | No IPR available | PANTHER | PTHR43994 | FAMILY NOT NAMED | coord: 159..489 coord: 53..123 |
None | No IPR available | CDD | cd02557 | PseudoU_synth_ScRIB2 | coord: 159..307 e-value: 1.14002E-80 score: 257.559 |
IPR006145 | Pseudouridine synthase, RsuA/RluB/C/D/E/F | PFAM | PF00849 | PseudoU_synth_2 | coord: 165..293 e-value: 2.2E-22 score: 79.8 |
IPR006224 | Pseudouridine synthase, RluC/RluD, conserved site | PROSITE | PS01129 | PSI_RLU | coord: 186..200 |
IPR020103 | Pseudouridine synthase, catalytic domain superfamily | SUPERFAMILY | 55120 | Pseudouridine synthase | coord: 158..310 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk06178 ID=Tk06178|Name=Tk06178|organism=Tigriopus kingsejongensis|type=polypeptide|length=906bp MCGENNLTDWISPPVHAVGALEGFPSLDGCRPHGNLVQGREPGKVEEVGD LHAKLETKALKAKRPGFTDDRYNETAYYVENGLRKVYPYYFTFTTFTKGR WVGEKILEVFGREFRAHPVEEYYSLTLYLSLSLPNPIHGGTAHLVPILTA LKRLFPFKVHPCGRYRHNTVVFILAKEYNLKNLRTIHRLDRLTSGLLMFG RNPKKARDMEQQIRNRQVLKEYVCRVEGEFPEGCTECNQPVEVVSYKIGV CKVSPQGKECRTEFERLSFNGSTSVVLCRPFTGRMHQIRVHLQYLGFPVI NDPLYNHVVFGPTKGKGGIIGKSDDQLIQDLIAIHNAENWLGMDGDSELS MFNKDGKKEETNGNGTGTPCDDILEVPAQNENLAKDGDNESTHWVYDPTN PVESLERNPQVPRNCTITRPPPITRPGRDPVVIRQPLERESSETITEQDN ELLSKHQEYRYQPEKMTWDPNCYECKVKYRDPKPKDLVMVQIGNSRPAFQ IGPRRIGMDQPFENVMNGRNSKSSMIRLEPSLEADNDVEFTWEDEEQLLD DLIDLTAEELLVPPTNVAQLQALGEHQPRRGKRFTVDFNGMQVSYPTYVR LSRLQAKVVKLQKMIQLLHRRYTPEQLDGLPQYGRLMELYESLRPLLPSN TFQELVPPEPTPIGSVMEKRSFNPWPVSTEQDRMLAIFEHVGELERLMER LQRDTSADQLEQDPGWQSLIHLHRELNAKLAKYSVYHNLEFSPNRQLGER AKRSTKFKNMYVSVPEYGRLMKMQKTALKLDSLLRKMVKDIGLDRLQADP KWNDLVQLRESLQTVLPEDHPEFDQKQMSAQKRGLVTEFNGVQVSYPQYL HLMSLQRKVRKLDSVMGKIASLRSPEELAQTPQWRKLKDLRQSLIRLLPL SGSPLK back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term | Definition |
IPR006145 | PsdUridine_synth_RsuA/RluD |
IPR006224 | PsdUridine_synth_RluC/D_CS |
IPR020103 | PsdUridine_synth_cat_dom_sf |
Vocabulary: Biological Process
Term | Definition |
GO:0009451 | RNA modification |
GO:0001522 | pseudouridine synthesis |
Vocabulary: Molecular Function
Term | Definition |
GO:0003723 | RNA binding |
GO:0009982 | pseudouridine synthase activity |
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