Tk06178, Tk06178 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk06178
Unique NameTk06178
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length906
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 601..621
NoneNo IPR availableGENE3D3.30.2350.10coord: 150..339
e-value: 1.4E-44
score: 154.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 400..429
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 400..414
NoneNo IPR availablePANTHERPTHR43994:SF2RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 2coord: 53..123
coord: 159..489
NoneNo IPR availablePANTHERPTHR43994FAMILY NOT NAMEDcoord: 159..489
coord: 53..123
NoneNo IPR availableCDDcd02557PseudoU_synth_ScRIB2coord: 159..307
e-value: 1.14002E-80
score: 257.559
IPR006145Pseudouridine synthase, RsuA/RluB/C/D/E/FPFAMPF00849PseudoU_synth_2coord: 165..293
e-value: 2.2E-22
score: 79.8
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 186..200
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 158..310

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
snap_masked-scaffold191_size271209-processed-gene-0.7-mRNA-1snap_masked-scaffold191_size271209-processed-gene-0.7-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk06178 ID=Tk06178|Name=Tk06178|organism=Tigriopus kingsejongensis|type=polypeptide|length=906bp
MCGENNLTDWISPPVHAVGALEGFPSLDGCRPHGNLVQGREPGKVEEVGD
LHAKLETKALKAKRPGFTDDRYNETAYYVENGLRKVYPYYFTFTTFTKGR
WVGEKILEVFGREFRAHPVEEYYSLTLYLSLSLPNPIHGGTAHLVPILTA
LKRLFPFKVHPCGRYRHNTVVFILAKEYNLKNLRTIHRLDRLTSGLLMFG
RNPKKARDMEQQIRNRQVLKEYVCRVEGEFPEGCTECNQPVEVVSYKIGV
CKVSPQGKECRTEFERLSFNGSTSVVLCRPFTGRMHQIRVHLQYLGFPVI
NDPLYNHVVFGPTKGKGGIIGKSDDQLIQDLIAIHNAENWLGMDGDSELS
MFNKDGKKEETNGNGTGTPCDDILEVPAQNENLAKDGDNESTHWVYDPTN
PVESLERNPQVPRNCTITRPPPITRPGRDPVVIRQPLERESSETITEQDN
ELLSKHQEYRYQPEKMTWDPNCYECKVKYRDPKPKDLVMVQIGNSRPAFQ
IGPRRIGMDQPFENVMNGRNSKSSMIRLEPSLEADNDVEFTWEDEEQLLD
DLIDLTAEELLVPPTNVAQLQALGEHQPRRGKRFTVDFNGMQVSYPTYVR
LSRLQAKVVKLQKMIQLLHRRYTPEQLDGLPQYGRLMELYESLRPLLPSN
TFQELVPPEPTPIGSVMEKRSFNPWPVSTEQDRMLAIFEHVGELERLMER
LQRDTSADQLEQDPGWQSLIHLHRELNAKLAKYSVYHNLEFSPNRQLGER
AKRSTKFKNMYVSVPEYGRLMKMQKTALKLDSLLRKMVKDIGLDRLQADP
KWNDLVQLRESLQTVLPEDHPEFDQKQMSAQKRGLVTEFNGVQVSYPQYL
HLMSLQRKVRKLDSVMGKIASLRSPEELAQTPQWRKLKDLRQSLIRLLPL
SGSPLK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluD
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
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